LOC122349594 (si:ch211-15j1.5,LOC107574374,LOC107576777,LOC107725412,LOC100334101)


Basic Information

Item Value
gene id LOC122349594
gene name si:ch211-15j1.5,LOC107574374,LOC107576777,LOC107725412,LOC100334101
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29845625 ~ 29848380 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043245704.1
ATGTGCAATGAAATTCCGGTGGAGCAACCTCAAGGTGCCTACTACAAACAAAGATGTGAGGAGAAAGACCAGATCAAGACTGTTTTTACTAAAGGCATCGCTGGAATCGGAAAAaccgtctctgtgcagaagtttaTTCTGGACTGGGCTGAGGGAAAAAAcaatcaggatgtagattttatgtttgtgcttccatttcgagagctgaacttgatccgagatcatcagtacagtcttcacagacttctgctGGACTTTCATCCTGAACTTCAAGATCTGGACCCAAAGATTTATGAGGAGTGtaaagttgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagatgatcAGAAAGTTTGTGATGTGACTGAGACTTCATCAGTGAGTGTGTTGATATCAAACCTCATGAAAGGAGAgctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccctCAAATTACATCAACCGTCTGACAGAAATTCAGGGATTCACTGAgcctcagaaggaggaatatttcaggaagagAATCAGTGACCAGCATCAAGCcagcagaatcatctcacacatcagaagagcaagaagcctccacatcatgtgtcacatccctgtcttctgctggatctcatccaCTGTGCTTCAGAAGATCCTGGAAGAAGATCTGAGTGCAGAAATCCCCcaaactctgactgaaatgtacatccacTTCCTGCTGATTCAGATCAACATAAGGAACCAGAAGTATGAAGGGAGAGATCCAGAGAAACTCCTGCAGTCTAACAGAGAAGtaattgtgaaacttgctgaATTGGCTTTCAGGCAGCTGATGAAGGGCAATGTGATGTTTTATGAGGAGGACCTGATTGAGAGCGGCATAGACGTCACTGATGCCtcagtgtattctgggatttgTACTGAGATCTTTAAGGAG

Function

symbol description
si:ch211-15j1.5 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043245704.1 True 972 mRNA 0.44 3 29845625 29848380

Neighbor

gene id symbol gene type direction distance location
LOC122357555 sh2d3a,LOC107685029,LOC107662707,LOC107560576 coding downstream 13477 29822257 ~ 29832148 (-)
LOC122324036 LOC107571898,LOC107659785,LOC107659779,LOC107576778,LOC107571412,LOC107574527,LOC107675009 coding downstream 34106 29809374 ~ 29811519 (-)
LOC122363120 LOC107722580 coding downstream 37042 29806587 ~ 29808583 (-)
LOC122358417 LOC107721946,LOC107662706,LOC107560594 coding downstream 39405 29799978 ~ 29806220 (-)
LOC122324192 zgc:92827,LOC107758210,LOC107665919,LOC107758399,LOC107573835,LOC107668524,LOC107573875 coding downstream 53388 29786585 ~ 29792237 (-)
LOC122351861 primpol,LOC107656685,LOC107702393,LOC107750460 coding upstream 307329 30155709 ~ 30165350 (-)
LOC122350995 LOC107660492,LOC107757584,LOC107700259,LOC107548308 coding upstream 459583 30307963 ~ 30314051 (-)
LOC122350179 rhoh,LOC107548321,LOC107598269,LOC107757583 coding upstream 470701 30319081 ~ 30321983 (-)
LOC122350704 n4bp2,LOC107700258,LOC107598270,LOC107757609,LOC107598268 coding upstream 474939 30323319 ~ 30324865 (-)
trnar-ucg_101 NA coding upstream 509699 30358079 ~ 30358151 (-)
G7675 cdc37 non-coding downstream 264498 29524195 ~ 29581127 (-)
G7686 NA non-coding downstream 292039 29522899 ~ 29553586 (-)
G7694 NA non-coding downstream 296423 29547872 ~ 29549202 (-)
G7683 LOC107739936,LOC107690077,LOC107566820 non-coding downstream 344928 29496887 ~ 29500697 (-)
G7654 LOC107662685 non-coding downstream 370774 29470716 ~ 29474851 (-)
G7751 NA non-coding upstream 37900 29886280 ~ 29886672 (-)
G7755 NA non-coding upstream 66288 29914668 ~ 29915054 (-)
G7761 NA non-coding upstream 169903 30018283 ~ 30018557 (-)
G7764 LOC107691293 non-coding upstream 184190 30032570 ~ 30037959 (-)
LOC122351377 NA non-coding upstream 249478 30097858 ~ 30099331 (-)
G7648 LOC107662685,LOC107678949 other downstream 369287 29426098 ~ 29476338 (-)
G7655 LOC107662685 other downstream 370237 29452759 ~ 29475388 (-)
LOC122354733 LOC107678949,LOC107566822,LOC107713175,LOC107662686,LOC107758373,LOC107574162,LOC107662685 other downstream 411412 29411107 ~ 29434213 (-)
G7569 gtf3c1,LOC107678316 other downstream 535027 29301807 ~ 29310598 (-)
LOC122362981 LOC107662727,LOC107560596,LOC107685031,LOC107722572 other downstream 693080 29067982 ~ 29152545 (-)
G7816 NA other upstream 343821 30192201 ~ 30197848 (-)
G7868 NA other upstream 781854 30630234 ~ 30630505 (-)
G8009 NA other upstream 1095118 30943498 ~ 30957486 (-)
G8091 abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823 other upstream 1683689 31532069 ~ 31537416 (-)
G8089 abca1a,LOC107571910,LOC107703854,LOC108413301 other upstream 1701806 31550186 ~ 31554035 (-)

Expression


Co-expression Network