LOC122349710 (patl1,LOC107594300,LOC107657997,LOC107703847,LOC107598520)


Basic Information

Item Value
gene id LOC122349710
gene name patl1,LOC107594300,LOC107657997,LOC107703847,LOC107598520
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31384340 ~ 31393086 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043245858.1
ATGTTCCATTTCCAGGGTTTTGACGATGACTGCACCCTGGAGGAGGAAGGGTTGGTAGAGGAAGAAGATGAAATTGACCAGTTCAATGATGACACTTTTGGTGCAGGGGCCATCGATGATGATTGGCAGGAGGAGCATGCCCGCCTCGCAGAGCTTGACGAGCGGGTCCGAGACGTTGTGCATGGAGCGGGAgacgcctcctcctcctcctcctccgttGACCTCCCTCCCGCTGGCAGCAATGCCCACTCTTCGGCCCTCCCTCgaccctcctcttcctcccggCTTTACCCTGGCATGGACGAACGGGGAGGCGGTGACCTGGCGGAGTCGCTGACTCGGCTCATCTTGGGCTCGGATCCTGCTATCGCCGGAGTGGGCACCGCCAGGTCAGACAGATCCCGGCTTCCTCCGATGCTGTCCGGTCCGCCTCCTAAGCCCTCAGCATTGGCTGAACAGTCTTCTCTGCTGCTGAGCtaccaacagcagcagcagctcatgCACAGAGGGCCGGCTCCTCTTCCACAGATAAACTCTCACAGTATTTGGGAGAACAATATGGGCTTCAGTCCTGTTAGTTCTGGACTAGTCACTCAAAAAGAGGACAAAACGCTTATGTCCATTATCAAAGAGGTGGGGCTTCCTAATCGTCCTCCTGCACTCAGCAGAGAAGAAGGGCGAGATTTGTCAGAAAGGGTTCCGCCTCCTCGCTCCTGCTCTCCTGTGATTGGAAGTCCACCTGTAAGGGCTGTACCTATCGGAACGCCTCCGAAACAGCCCATGAGTCAGGTTCACAGTCAGCAGaatAATCACCCTTCAGCCATTCACGTGAGAGCCTCTGTGCCACTGCGCTACCCCCCTCCCTTCCCCGAGCGCCTGTCCCCCAACAACCTCCTCAGCATCACTAATTCACCGTTGTCTCATCCTCCGTTccctgctggtgttggtcctgTTCTGTCTCAGTTACAGAGAGCCCAACTTCTCAACTCTCAGGTTGGTCAGTTCTCACGTGGTCCAGCTCCCCCATTATTACAGGGAAGTCTCGGGGGTTTCAGGCCGTTCTTCGGGCAGTCTGGTCCTAGAATGGGTCCCCATGGGCCACCTCTCGGCCACGCACCCATCCGTCACAACACCACCCACCTCCACCCACAGCATCGCAGAATGCTCAACCAGAGGATGCAGAACAGAGGCTTGGGCGATCACGTCGGAGGGAGAGGTGTTGGAGAAAGGAAAAACAGAGATCCTTACAGCAATCTGATGACGCAAAGAGAGAAGGAATGGGTAGCGAGAATCCAAATGATGCAGCTTCAAAGCACCGATCCATATCTGGATGACTACTATTACCAGAATTACTATGAAAAAATGGAGAAGCGTCAAGAGCGGGACAGAGACAACAGGAAGGAGCACACCACCAAACTCATCACTCCTCAAGTGGCTAAACTGGAGCACACCTATCGGCCAgTGCAGTTTGCCGGCTCGTTAGGAAAGCTCACCGTCTCCAGTGTGAACAATCCAAGGAAAATGATTGATGCCGTGGTGACAACTCGTAGTGATGATGAGgaaaaaagagaaaagcaagTGTGGAACAAAAGACGGCAAATCCTTTACACTGTGGAGAAGATGTACAGTCTATTATTAGAAGTGCAAGACTTTGAGAAGAAGTTCTTGCAGACCCCTGAGCACCAAAGAGATGCCCTGCTAGAACAGCATAAAACTCACACGCTGCAGCTCTACAACTCCCTCCGAGAAAAAGAGTGGGACGATCGAATGAGCGATGAGCAGTGCTTGATGATCATGTCTGTGCGTAAGGGGAAACGCCTCATCTCCAGACTCCTCCCCTTCCTGCCGCAGACACAGGCTGCCGCTGTTGTCATGGGAATAGCCAGGAACCTTCCAGCTCTGGCCAAGAAAGACAAACAAGACCAGGTACTGTGTTGGTTGGTAGAGCCAGTGACGGCAGTAATCCAGTCCATGTCGAGTACCTCCCTCACTGATCTCCTTCAGGAGCTGCAGGGCAGTGAAGGACAGCTTCCCCTTGTGCTGCAAAATAAGTTTGGCGTGACGCTGCTCTATCTGATTCTGAGCGAAGGAGAGAGGATGCAGAGCTCCGATCCCAACTGTCAGCTCATGGATGATAACCGCTGGACTGAGTTGGTGTTCTCTGTGACGCGGGAGCTGTTGAAAGTCCCGTCCTCTGCTCTTTCATCGCCTCTGTTTACTCCTCCAAACCTAGTGTCCCTGTTCTCTCGATACGTGGACCGCCAGAGACTCGAGCTCCTGCAGGAGAAGCTACAgATCACAGCCCTGTCCAGGTAGAAGTGACTTCAAATATGGCAGTTGTTGAGAGACTGACTGTTAATGTATTTGTGAATGAGCAGTTTTACGTGATATGTATTGGGAGGGTGAGGCCCGGTCACTTTTCCTTTCTCGTTATAAGAATCACAATAGATaagaataatgtttaaatggtaataaactGTTGTCCATAGGTTTGTCAATAAAGGCAATCAGGTATATGTATTTTAGCTTCCATTAGGGTCAGCTCCGAGCAAAAGAGCCAGGAAGGGGAGCGCGGCATGTGGCGAGGTTTCCCTGTGAAACGGCTCCATCATGACAACATCCGACCTTATTTATAGACGCATAGATTTGAGGAGAATTTTGCTGTacattaatatcttaattttctTATACACTGCAGCTTGTTGTATGTTTGCAAAAGAGTGACTGTGCAAGTGTGTCTGTGAGTTTAAATGAAGGGTTAAACAAAGgtattcttcatttttaaatatcttgacATGATGCCTGTGATACacatgaaattaaaactttCTATTATACAAA

Function

symbol description
patl1 Predicted to enable RNA binding activity. Predicted to be involved in P-body assembly and deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to be located in PML body; cytoplasm; and nuclear speck. Predicted to be active in P-body. Orthologous to human PATL1 (PAT1 homolog 1, processing body mRNA decay factor).

NR:

description
PREDICTED: protein PAT1 homolog 1 isoform X1

GO:

id name namespace
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA biological_process
GO:0033962 P-body assembly biological_process
GO:0000932 P-body cellular_component
GO:0016605 PML body cellular_component
GO:0030014 CCR4-NOT complex cellular_component
GO:0016607 nuclear speck cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12617 PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043245858.1 True 2841 mRNA 0.51 19 31384340 31393086

Neighbor

gene id symbol gene type direction distance location
LOC122349700 NA coding downstream 5801 31372496 ~ 31378539 (-)
cldng LOC107748278,LOC107691622,LOC107580989,LOC107552232,LOC107654796 coding downstream 410179 30972789 ~ 30974161 (-)
creb1a creb1a,creb1b,LOC107714305,LOC107757658,LOC107691602,LOC107552236 coding downstream 442614 30936398 ~ 30941726 (-)
cd99 LOC107746638,LOC107654756,LOC107714307,LOC107598750 coding downstream 510975 30862379 ~ 30873365 (-)
trnar-ucu_5 NA coding downstream 521379 30862870 ~ 30862961 (-)
tacr3l tacr3l,LOC107570821,LOC107657987,LOC107757062,LOC107703855,LOC107746088,LOC108411976 coding upstream 168895 31561981 ~ 31572621 (-)
cldnd1b cldnd1b,LOC107746097,LOC107757065,LOC107570824,LOC107703857,LOC107657989 coding upstream 198051 31591137 ~ 31595295 (-)
glb1 glb1,LOC107746116 coding upstream 202745 31595831 ~ 31602441 (-)
LOC122327810 LOC107747443 coding upstream 241315 31634401 ~ 31661603 (-)
best2 best2,LOC107676102,LOC107569522,LOC107583204,LOC107694823,LOC100695332 coding upstream 335002 31728088 ~ 31734933 (-)
G8062 NA non-coding downstream 16112 31360119 ~ 31368228 (-)
G8072 NA non-coding downstream 49198 31334610 ~ 31335142 (-)
G8054 NA non-coding downstream 86499 31204027 ~ 31297841 (-)
LOC122350699 NA non-coding downstream 142294 31240243 ~ 31242046 (-)
G8042 NA non-coding downstream 204179 31177794 ~ 31180161 (-)
G8066 NA non-coding upstream 72535 31465621 ~ 31467033 (-)
G8086 NA non-coding upstream 75209 31468295 ~ 31470517 (-)
G8084 NA non-coding upstream 86101 31479187 ~ 31480344 (-)
G8074 NA non-coding upstream 99211 31492297 ~ 31495910 (-)
G8093 NA non-coding upstream 155109 31548195 ~ 31548754 (-)
G8009 NA other downstream 426854 30943498 ~ 30957486 (-)
G7868 NA other downstream 753835 30630234 ~ 30630505 (-)
G7816 NA other downstream 1186492 30192201 ~ 30197848 (-)
G7648 LOC107662685,LOC107678949 other downstream 1908002 29426098 ~ 29476338 (-)
G8091 abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823 other upstream 138983 31532069 ~ 31537416 (-)
G8089 abca1a,LOC107571910,LOC107703854,LOC108413301 other upstream 157100 31550186 ~ 31554035 (-)
LOC122349741 NA other upstream 229588 31622674 ~ 31626684 (-)
LOC122349752 NA other upstream 233817 31626903 ~ 31630020 (-)

Expression


Co-expression Network