lamp1a (LOC107694471,LOC107751063,LOC107571985,LOC107574978)


Basic Information

Item Value
gene id lamp1a
gene name LOC107694471,LOC107751063,LOC107571985,LOC107574978
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2489469 ~ 2498691 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043245986.1
ACCTCTATATTTGTGCTATGCAGCttcaacaacattaaaataacacttaaactgccattttttttaattaactgataTTAACACGTATCTAACACTTATATTAAAGTAACGTAGAGTGAGTCACGTTCACGTGAccggagtgggcggggctaaagcGCTCTCATCACATGACTGGAATATTCCGCCTCATGACACAGTGACTCTGCGGCCAGACACCGAACGAACTCGGTTTATCGCCGACAGACGCGCGCTTAAACATCTCGGATCTTTCGTCTTCGGCCCGCGGGCTTTCTCACTCAGTGTTCGGGGTTCTGACGCTTTTCCTGACGGACCGAGGCATGCCGGTCACACGGAGCTCCGCCGCAGGTGTCTGCTGGATCCTCCTGACGGGGTGTGTGTTTGCGGCTCACTCTGTGACATTTGAGGTGAAGGATGGAAACTCCACCTGCATTAAAGCAGATCTCAACGCCAGCTTCAGCATCACCTACACCACAACCAACGGAAcgagcgCGGTGAGGTTTGCTCTTCCGTCCTCGGCGGTGGTGGGTGAGAGCAGCTCCTGCGGTGAAGAGGAGCTGCAGGTGTCCTTCGGAGCCGGTcactctctcacgctcctgttCTCCAAAGACGAGGGGCTCTACCGCGTGTCCAACATCAGCCTGCAGTACAACCTGAGCGACTCCAGCACCTTCCCGCAGTCCTCCAGcacagGACTCGTGACGGTGATGACGAACGTGACGGAGATCTGGGCGAGGCTGAACAGCACCTACAGGTGCGTGAGCTCCAGCTCCATCAGGCTGAGCTCCGAGGCCAACCTCACCTTCTCTGACGTTCACCTGGAGGCTTACATGAGAGGAGCGGACTTCAGCAGCGACGagagtgtTTGCAGTGCTGATCAGACTGTTACGACCTCCGCCCCGACTCAGTCGCCCAGAACCACGGCCGCCCCGTCTCCTGTCCCGCCGCCGGCTCCGGAGCGAGGGAACTACACCCTCACTGACCGTAACGGCACCGCCTGCCTGCTGGCGCTCATGGGCCTGCAGCTCAACATCACACACCGCTCCAGAGCCCTGAACCAGACGGTCACCGAGATCGTGAACCTGCAGCCCAACCGCACCGCAGCCTCGGGGTCGTGTGGGGTCACGGTCGCCACTCTGGTGCTGACGGAGGATCTCACCAACCTCACCTTCACCTTCACactgAACTCCACCACACAGAAGTATTTCCTGAGCTCTGTGAGCGTCTCTGCTCTCTGGCCGGACATGACAGAGCGTTTCGTGGAGAGGAACGCTTCTCTGAATCTGCTGCAGTGCAGCGTGGGTCGCTCGTACATGTGCAGCTCGGAGCAGACGCTCTCCATCGTCTCCAGCTTCTCCATCAACACCTTCAGACTGCAGCTGCAGCCCTTCAACGTCACGGCCGGACGCTTCTCTGCAGTGGAGGAGTGTCGTGTGGATCAGGAGAACATGCTCATCCCCATCATCGTGGGCGTGGCTCTGGCCGGTCTGGTGCTGATCGTTCTCATCGCCTATCTGATCGGAAGGAAGAGGACACACGCCGGATACCAGACCATCTGATCACACTCCGTCTGCGCTctgattagtgtgtgtgtgtgtgtgtgtgtgtgaggtcaggggtcagctgcagtgtgtgtgtgtgtgtgtgtgtgtgaggtcaggGGTCAGCTGCAGTGTCTGGGTGTGTGTGATCGCTGTGAGGTCAGGGGTcagctgcagtgtgtgtgtgtgaggtcaggggtcagctgcagtgtgtatgtgtgagatcGCTGTGAGGTCAGGGGTCACCTGCAGTGTGTGAGAGGTCAGGGGTCAcctgcagtgtgtgtgaggtcagGGGTcacctgcagtgtgtgtgtgagaggtcaggggtcagctgcagtgtgtgtgtgtgtgtgtgtgtgtgtgagaggtcaAGGGTCAGctgcagtgtgtatgtgtgtgtgtgtgagatcgcTGTGAGGTCAGGGGTCAcctgcagtgtgtgtgaggtcagGGGTCAcctgcagtgtgtgtgaggtcagGGGTcacctgcagtgtgtgtgtgagaggtcaggggtcagctgcagtgtgtgtgtgtgtgtgtgtgtgtggtcaggggtcagctgcagtgtgtgtgtgtgtgtgtgttagagatgTGCGGGTGAGCTCAAACATCATCACATGATCATTGGACAGAGCAAAGAAACCCAAGACGCTGTTTTTGGGCTGCTTTCGAAGGCTTTAGTAACTTCAGTCTGAACCTGAACGACACACGACACACACTTCCTCTCTGCAGGAAAAAGTGCATTGAAAGCAGGTTCATATTTCACACAATGCAGTTAATATTTGCGACATTAATGATTTGATCCACCTGCAATTAAtcagaatgtgtttttattacctGACCACAGAtataacctgtgtgtgtgtgtgtgtgtgtgagagatcgCTGTGAGGGTCAAGGGTCAACTGCAGTGGTCATTAGTGTGTGTGATTTCTCCGTGAGGtcaatgtatgtgtgtactgtaaggtgtgtgtgtgtgtgtgtgtgatggactAGACACAGCTTCAGTCTCATTCATCCTCATCAAATCAGACTTGTTTTATTCTAATAATCTTGCTGTGGGTAGTTCACACTGATCCTGAGACACCCACGCTCtttattctaaaatgctgaACCTTTTAGTGTACTGAATTTAATTGGATTCATGTAGAAACAAGTTTATATcagatcgtgtgtgtgtgtgagagagagagagagagacgctggCATTAAATGACACCtgatgtaaataattaatgtttgttcTTGTTTCTTGGATCATGAAACCTGAATAGAGCCGCTGGTGAATTACCCATgatcctccacacacacacacacacacacacacagctgtaagGGGTCTGCTCACACAGATTTAAAGTGTGGTGTTTTGTGAGACTCGTGCAGTGAATCTGTGTGAACCTGAACCCTAaaaacatgatgatgatgatgaagatgaagttCATTTTGTTGCTCGAGTGAAAAGGGAAGTGAATAAATGTGAGTCTGAAACTATATCTTGTGCTTTCCTAAGACATCTAAAGTGCATGTCAGTgacatcatcatcttcatcatcttcatcggcagcagcttcctgacagtgatgatgatgatgatgaagatgaagccCACCGGTCACGTCTGGTGATTCGTCTGGTCACATGACTGCTGCGCTGATATTTTTGTAGTGaatgtttggttatttttatgCTTCAAGGTTTgaggttaataaataaataatgacttaCA
>XM_043245995.1
ACCTCTATATTTGTGCTATGCAGCttcaacaacattaaaataacacttaaactgccattttttttaattaactgataTTAACACGTATCTAACACTTATATTAAAGTAACGTAGAGTGAGTCACGTTCACGTGAccggagtgggcggggctaaagcGCTCTCATCACATGACTGGAATATTCCGCCTCATGACACAGTGACTCTGCGGCCAGACACCGAACGAACTCGGTTTATCGCCGACAGACGCGCGCTTAAACATCTCGGATCTTTCGTCTTCGGCCCGCGGGCTTTCTCACTCAGTGTTCGGGGTTCTGACGCTTTTCCTGACGGACCGAGGCATGCCGGTCACACGGAGCTCCGCCGCAGGTGTCTGCTGGATCCTCCTGACGGGGTGTGTGTTTGCGGCTCACTCTGTGACATTTGAGGTGAAGGATGGAAACTCCACCTGCATTAAAGCAGATCTCAACGCCAGCTTCAGCATCACCTACACCACAACCAACGGAAcgagcgCGGTGAGGTTTGCTCTTCCGTCCTCGGCGGTGGTGGGTGAGAGCAGCTCCTGCGGTGAAGAGGAGCTGCAGGTGTCCTTCGGAGCCGGTcactctctcacgctcctgttCTCCAAAGACGAGGGGCTCTACCGCGTGTCCAACATCAGCCTGCAGTACAACCTGAGCGACTCCAGCACCTTCCCGCAGTCCTCCAGcacagGACTCGTGACGGTGATGACGAACGTGACGGAGATCTGGGCGAGGCTGAACAGCACCTACAGGTGCGTGAGCTCCAGCTCCATCAGGCTGAGCTCCGAGGCCAACCTCACCTTCTCTGACGTTCACCTGGAGGCTTACATGAGAGGAGCGGACTTCAGCAGCGACGagagtgtTTGCAGTGCTGATCAGACTGTTACGACCTCCGCCCCGACTCAGTCGCCCAGAACCACGGCCGCCCCGTCTCCTGTCCCGCCGCCGGCTCCGGAGCGAGGGAACTACACCCTCACTGACCGTAACGGCACCGCCTGCCTGCTGGCGCTCATGGGCCTGCAGCTCAACATCACACACCGCTCCAGAGCCCTGAACCAGACGGTCACCGAGATCGTGAACCTGCAGCCCAACCGCACCGCAGCCTCGGGGTCGTGTGGGGTCACGGTCGCCACTCTGGTGCTGACGGAGGATCTCACCAACCTCACCTTCACCTTCACactgAACTCCACCACACAGAAGTATTTCCTGAGCTCTGTGAGCGTCTCTGCTCTCTGGCCGGACATGACAGAGCGTTTCGTGGAGAGGAACGCTTCTCTGAATCTGCTGCAGTGCAGCGTGGGTCGCTCGTACATGTGCAGCTCGGAGCAGACGCTCTCCATCGTCTCCAGCTTCTCCATCAACACCTTCAGACTGCAGCTGCAGCCCTTCAACGTCACGGCCGGACGCTTCTCTGCAGTGGAGGAGTGTCGTGTGGATCAGGAGAACATGCTCATCCCCATCATCGTGGGCGTGGCTCTGGCCGGTCTGGTGCTGATCGTTCTCATCGCCTATCTGATCGGAAGGAAGAGGACACACGCCGGATACCAGACCATCTGATCACACTCCGTCTGCGCTctgattagtgtgtgtgtgtgtgtgtgtgtgtgaggtcaggggtcagctgcagtgtgtgtgtgtgtgtgtgtgtgtgaggtcaggGGTCAGCTGCAGTGTCTGGGTGTGTGTGATCGCTGTGAGGTCAGGGGTcagctgcagtgtgtgtgtgtgaggtcaggggtcagctgcagtgtgtatgtgtgagatcGCTGTGAGGTCAGGGGTCACCTGCAGTGTGTGAGAGGTCAGGGGTCAcctgcagtgtgtgtgaggtcaAGGGTCAGctgcagtgtgtatgtgtgtgtgtgtgagatcgcTGTGAGGTCAGGGGTCAcctgcagtgtgtgtgaggtcagGGGTCAcctgcagtgtgtgtgaggtcagGGGTcacctgcagtgtgtgtgtgagaggtcaggggtcagctgcagtgtgtgtgtgtgtgtgtgtgtgtggtcaggggtcagctgcagtgtgtgtgtgtgtgtgtgttagagatgTGCGGGTGAGCTCAAACATCATCACATGATCATTGGACAGAGCAAAGAAACCCAAGACGCTGTTTTTGGGCTGCTTTCGAAGGCTTTAGTAACTTCAGTCTGAACCTGAACGACACACGACACACACTTCCTCTCTGCAGGAAAAAGTGCATTGAAAGCAGGTTCATATTTCACACAATGCAGTTAATATTTGCGACATTAATGATTTGATCCACCTGCAATTAAtcagaatgtgtttttattacctGACCACAGAtataacctgtgtgtgtgtgtgtgtgtgtgagagatcgCTGTGAGGGTCAAGGGTCAACTGCAGTGGTCATTAGTGTGTGTGATTTCTCCGTGAGGtcaatgtatgtgtgtactgtaaggtgtgtgtgtgtgtgtgtgtgatggactAGACACAGCTTCAGTCTCATTCATCCTCATCAAATCAGACTTGTTTTATTCTAATAATCTTGCTGTGGGTAGTTCACACTGATCCTGAGACACCCACGCTCtttattctaaaatgctgaACCTTTTAGTGTACTGAATTTAATTGGATTCATGTAGAAACAAGTTTATATcagatcgtgtgtgtgtgtgagagagagagagagagacgctggCATTAAATGACACCtgatgtaaataattaatgtttgttcTTGTTTCTTGGATCATGAAACCTGAATAGAGCCGCTGGTGAATTACCCATgatcctccacacacacacacacacacacacacagctgtaagGGGTCTGCTCACACAGATTTAAAGTGTGGTGTTTTGTGAGACTCGTGCAGTGAATCTGTGTGAACCTGAACCCTAaaaacatgatgatgatgatgaagatgaagttCATTTTGTTGCTCGAGTGAAAAGGGAAGTGAATAAATGTGAGTCTGAAACTATATCTTGTGCTTTCCTAAGACATCTAAAGTGCATGTCAGTgacatcatcatcttcatcatcttcatcggcagcagcttcctgacagtgatgatgatgatgatgaagatgaagccCACCGGTCACGTCTGGTGATTCGTCTGGTCACATGACTGCTGCGCTGATATTTTTGTAGTGaatgtttggttatttttatgCTTCAAGGTTTgaggttaataaataaataatgacttaCA
>XM_043246005.1
ACCTCTATATTTGTGCTATGCAGCttcaacaacattaaaataacacttaaactgccattttttttaattaactgataTTAACACGTATCTAACACTTATATTAAAGTAACGTAGAGTGAGTCACGTTCACGTGAccggagtgggcggggctaaagcGCTCTCATCACATGACTGGAATATTCCGCCTCATGACACAGTGACTCTGCGGCCAGACACCGAACGAACTCGGTTTATCGCCGACAGACGCGCGCTTAAACATCTCGGATCTTTCGTCTTCGGCCCGCGGGCTTTCTCACTCAGTGTTCGGGGTTCTGACGCTTTTCCTGACGGACCGAGGCATGCCGGTCACACGGAGCTCCGCCGCAGGTGTCTGCTGGATCCTCCTGACGGGGTGTGTGTTTGCGGCTCACTCTGTGACATTTGAGGTGAAGGATGGAAACTCCACCTGCATTAAAGCAGATCTCAACGCCAGCTTCAGCATCACCTACACCACAACCAACGGAAcgagcgCGGTGAGGTTTGCTCTTCCGTCCTCGGCGGTGGTGGGTGAGAGCAGCTCCTGCGGTGAAGAGGAGCTGCAGGTGTCCTTCGGAGCCGGTcactctctcacgctcctgttCTCCAAAGACGAGGGGCTCTACCGCGTGTCCAACATCAGCCTGCAGTACAACCTGAGCGACTCCAGCACCTTCCCGCAGTCCTCCAGcacagGACTCGTGACGGTGATGACGAACGTGACGGAGATCTGGGCGAGGCTGAACAGCACCTACAGGTGCGTGAGCTCCAGCTCCATCAGGCTGAGCTCCGAGGCCAACCTCACCTTCTCTGACGTTCACCTGGAGGCTTACATGAGAGGAGCGGACTTCAGCAGCGACGagagtgtTTGCAGTGCTGATCAGACTGTTACGACCTCCGCCCCGACTCAGTCGCCCAGAACCACGGCCGCCCCGTCTCCTGTCCCGCCGCCGGCTCCGGAGCGAGGGAACTACACCCTCACTGACCGTAACGGCACCGCCTGCCTGCTGGCGCTCATGGGCCTGCAGCTCAACATCACACACCGCTCCAGAGCCCTGAACCAGACGGTCACCGAGATCGTGAACCTGCAGCCCAACCGCACCGCAGCCTCGGGGTCGTGTGGGGTCACGGTCGCCACTCTGGTGCTGACGGAGGATCTCACCAACCTCACCTTCACCTTCACactgAACTCCACCACACAGAAGTATTTCCTGAGCTCTGTGAGCGTCTCTGCTCTCTGGCCGGACATGACAGAGCGTTTCGTGGAGAGGAACGCTTCTCTGAATCTGCTGCAGTGCAGCGTGGGTCGCTCGTACATGTGCAGCTCGGAGCAGACGCTCTCCATCGTCTCCAGCTTCTCCATCAACACCTTCAGACTGCAGCTGCAGCCCTTCAACGTCACGGCCGGACGCTTCTCTGCAGTGGAGGAGTGTCGTGTGGATCAGGAGAACATGCTCATCCCCATCATCGTGGGCGTGGCTCTGGCCGGTCTGGTGCTGATCGTTCTCATCGCCTATCTGATCGGAAGGAAGAGGACACACGCCGGATACCAGACCATCTGATCACACTCCGTCTGCGCTctgattagtgtgtgtgtgtgtgtgtgtgtgtgaggtcaggggtcagctgcagtgtgtgtgtgtgtgtgtgtgtgtgaggtcaggGGTCAGCTGCAGTGTCTGGGTGTGTGTGATCGCTGTGAGGTCAGGGGTcagctgcagtgtgtgtgtgtgaggtcaggggtcagctgcagtgtgtatgtgtgagatcGCTGTGAGGTCAGGGGTCACCTGCAGTGTGTGAGAGGTCAGGGGTCAcctgcagtgtgtgtgagGTCAGGGGTCAcctgcagtgtgtgtgaggtcagGGGTCAcctgcagtgtgtgtgaggtcagGGGTcacctgcagtgtgtgtgtgagaggtcaggggtcag

Function

NR:

description
PREDICTED: lysosome-associated membrane glycoprotein 1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K06528 LAMP1_2, CD107; lysosomal-associated membrane protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043245986.1 True 3291 mRNA 0.52 10 2489469 2498691
XM_043245995.1 False 3211 mRNA 0.52 10 2489469 2498691
XM_043246005.1 False 1949 mRNA 0.58 10 2490680 2498691

Neighbor

gene id symbol gene type direction distance location
tmco3 tmco3,LOC107577076,LOC107748345,LOC107571984,LOC107577957,LOC103375438 coding downstream 19003 2459690 ~ 2470466 (-)
tfdp1b tfdp1,LOC107694476,LOC107751069,LOC107748334 coding downstream 30661 2450271 ~ 2458808 (-)
grk1a grk1,grk1a,LOC107751068,LOC107694475,LOC107748333 coding downstream 40871 2442044 ~ 2448598 (-)
cenpe LOC107751066,LOC107573438,LOC107577987,LOC107654461 coding downstream 48570 2420476 ~ 2440899 (-)
LOC122342255 LOC107748337,LOC107665801,LOC107573435,LOC107694467 coding downstream 69798 2406814 ~ 2419671 (-)
cul4a cul4a,LOC102780633 coding upstream 1191 2499882 ~ 2511330 (-)
prozb NA coding upstream 20032 2518723 ~ 2523318 (-)
f10 LOC107654567,LOC107751061,LOC107694470,LOC107570070 coding upstream 25918 2524609 ~ 2529488 (-)
f7i f7,LOC107747061,LOC107654598 coding upstream 32205 2530896 ~ 2534653 (-)
f7 f7,LOC107747062,LOC107654615,LOC107551097,LOC107570083 coding upstream 37660 2536351 ~ 2540415 (-)
G617 NA non-coding downstream 109528 2378431 ~ 2379941 (-)
G563 NA non-coding downstream 117718 2369634 ~ 2371751 (-)
G614 NA non-coding downstream 129137 2349200 ~ 2360332 (-)
LOC122349938 NA non-coding downstream 147180 2334342 ~ 2342289 (-)
G559 ercc5 non-coding downstream 195952 2292924 ~ 2293517 (-)
G647 NA non-coding upstream 16963 2515654 ~ 2516175 (-)
LOC122351916 NA non-coding upstream 50233 2548924 ~ 2552261 (-)
G638 NA non-coding upstream 57552 2556243 ~ 2558864 (-)
G653 creg1,LOC107751059,LOC107739160,LOC107654633,LOC107551109,LOC107694464 non-coding upstream 62664 2561355 ~ 2561966 (-)
G652 creg1,LOC107694464,LOC107751059,LOC107551109,LOC107739160,LOC107654633 non-coding upstream 63500 2562191 ~ 2564410 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 884485 1592069 ~ 1604984 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 1257822 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 1741105 738137 ~ 748364 (-)
G67 NA other downstream 2053344 435808 ~ 436125 (-)
G20 NA other downstream 2302384 186420 ~ 187085 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 190074 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 637817 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 1509149 4007840 ~ 4014287 (-)
G820 NA other upstream 1799619 4298310 ~ 4299193 (-)
mdh1b mdh1b other upstream 2457428 4956119 ~ 4960210 (-)

Expression


Co-expression Network