XLOC_006586 (pbld2)


Basic Information

Item Value
gene id XLOC_006586
gene name pbld2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22849796 ~ 22862133 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012724
ACACTCCAGCTATGACTTCCTAAATATCCTGCCGAAGTCAACTTCCACTCCAGCGTGAACAATTGTAACCAATGGAGATTCCAATCTTTACGGTTGATGCATTTACAAAAGTACCTTTCAAGGGTAATCCTGCAGCAGTTTGTCTTTTAGAGAATGAGCTGCAAGATGATATTAAACAGAGCATTGCTGCAGAGATGAATTTATCAGAGACGGCTTTCATCACAAAACACATCTCAGTAGACTTTTCCACAGgTTCAAGGTTTGGATTACGCTGGTTTACCCCAAAAAGTGAGATTGCTCTATGTGGACATGCTACACTGGCCTCATCAGCAGTGCTCTTTTACCTTAAAAAAAACATCAACCCTGTTGTGGTGTTTGAGACTATGAGTGGGGAGCTTTACGTGCGTCGGCATGAAGACTCAATAATAATGGACTTCCCTTTAAACAAACCACAGCCGCAGGAACCACATGAAAACATGGATATTTTGAAGGCTGCTGTTGGAGATTTACCCATTGAGGACGTGTGCTACAGTCCAGCCATGAGGATACTGATGGTTCGTCTGGCTGACACATGTGACAGGTCTGAACTTATAACTTTGAGTCCCGTAGCAGAAGCTTTACTTAAAAGCGATTCCACTGGAAAAACAAAAGGTGTCCTTGTTACAATAAAAGGAACTTCAAATGCACAGCCTGGATATGACTTCTACTCCCGTTTATTTGCTCCATGGTTTGGAATCTTTGAAGATCCAGTTTGTGGGTCTGCACATACACTTCTTGCTGCCTACTGGTCTGAAAAGCTGAATAAAAAGAAATTGTTGGCTTACCAGTGCTCCAGTCGTGGGGGGGAACTGGAGCTGGAGGTGAGAGATGATGGTCGAGTAAACATCATTGGTCGGGCACAAATCATTCTTCAGGGAACTCTTAAAGTCTAGTCAAGTCATGCAAATCTACTCATTGAATCTGTTTATAGTTGTAAGGATGGCTAAATCTCTTCATATTATCAGAGCTGTTATGTAATTCCATACAGTAAGACCACAAATATtgcaatgcaataaaacaataaacattctAA
>TCONS_00012725
ggctcgcatgcggcagcgccggctcgctcggccacTGCATCTGGCttgattgactcggactggaatcgggcagtgagtccaggcatccggagtaggtccagcagagAAAACATCAACCCTGTTGTGGTGTTTGAGACTATGAGTGGGGAGCTTTACGTGCGTCGGCATGAAGACTCAATAATAATGGACTTCCCTTTAAACAAACCACAGCCGCAGGAACCACATGAAAACATGGATATTTTGAAGGCTGCTGTTGGAGATTTACCCATTGAGGACGTGTGCTACAGTCCAGCCATGAGGATACTGATGGTTCGTCTGGCTGACACATGTGACAGGTCTGAACTTATAACTTTGAGTCCCGTAGCAGAAGCTTTACTTAAAAGCGATTCCACTGGAAAAACAAAAGGTGTCCTTGTTACAATAAAAGGAACTTCAAATGCACAGCCTGGATATGACTTCTACTCCCGTTTATTTGCTCCATGGTTTGGAATCTTTGAAGATCCAGTTTGTGGGTCTGCACATACACTTCTTGCTGCCTACTGGTCTGAAAAGCTGAATAAAAAGAAATTGTTGG

Function

symbol description
pbld2 Predicted to enable isomerase activity. Predicted to act upstream of or within biosynthetic process. Predicted to be active in cytoplasm. Is expressed in myotome. Orthologous to human PBLD (phenazine biosynthesis like protein domain containing).

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-456 Predicted to enable isomerase activity. Predicted to act upstream of or within biosynthetic process. Predicted to be active in cytoplasm. Is expressed in myotome. Orthologous to human PBLD (phenazine biosynthesis like protein domain containing).

Ensembl:

ensembl_id ENSDARG00000026359

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012724 False 1072 mRNA 0.42 9 22849796 22862133
TCONS_00012725 True 574 processed_transcript 0.47 6 22856335 22858455

Neighbor

gene id symbol gene type direction distance location
XLOC_006585 BX530068.1 coding downstream 2312 22843830 ~ 22847484 (-)
XLOC_006584 pbld coding downstream 5991 22839821 ~ 22843805 (-)
XLOC_006583 si:ch211-1n9.6 coding downstream 30129 22819485 ~ 22819667 (-)
XLOC_006582 CR550304.1 coding downstream 65363 22778060 ~ 22784433 (-)
XLOC_006581 psda coding downstream 75305 22740038 ~ 22774491 (-)
XLOC_006587 rufy2 coding upstream 14334 22876467 ~ 22907260 (-)
XLOC_006588 tspan15 coding upstream 61891 22924024 ~ 22961610 (-)
XLOC_006589 hk1 coding upstream 110755 22972888 ~ 23007813 (-)
XLOC_006590 hkdc1 coding upstream 155365 23017498 ~ 23031803 (-)
XLOC_006591 supv3l1 coding upstream 175452 23037585 ~ 23051766 (-)
XLOC_006471 BX537274.2 misc downstream 12584891 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 22023571 825904 ~ 826225 (-)
XLOC_006578 BX649385.1 non-coding downstream 654628 22191361 ~ 22195168 (-)
XLOC_006577 NA non-coding downstream 909831 21925701 ~ 21939965 (-)
XLOC_006570 NA non-coding downstream 1702414 21146114 ~ 21147382 (-)
XLOC_006595 NA non-coding upstream 350626 23212759 ~ 23217818 (-)
XLOC_006597 NA non-coding upstream 545896 23408029 ~ 23411631 (-)
XLOC_006602 AL772289.1 non-coding upstream 1099159 23961292 ~ 23961406 (-)
XLOC_006605 CR762497.2 non-coding upstream 1264930 24127063 ~ 24127179 (-)
XLOC_006607 CR762497.1 non-coding upstream 1421537 24283670 ~ 24286390 (-)

Expression


Co-expression Network