LOC122349971 (lrrtm2,LOC107680618,LOC107750357)


Basic Information

Item Value
gene id LOC122349971
gene name lrrtm2,LOC107680618,LOC107750357
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21381701 ~ 21384924 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246136.1
CACCACTCTGTAGCAGTGAGTGGCTGCAACAAAAGCACAGAATAACATCTCAGCTCCTCTCCTCTGCTTTTTCCCCTCACTGCATCTCCTCTTCCTCGGTGCAGAGAACTCCACACAACACAGCAGAGCCACACGGAACTGTCGTCGCAAGTACAGCCACTGCCTGCCATCAACAAGTTAGGGATGAAGGACCTCAAGCAACGAAAGAGGAATGCGTGATCTTCAATTAACCAATTGAGCTGACATCATTGCGgtggaaaaggaaaaaggcaGCTAAGGGACGGAGGGATCTGCTCAGCGGTGCTGCTTTGGATGCAAATCATCAACTTCGAATTTAAGGATTCTTGGAAGGCAAATAATGCTGGTCTTTTCTTAATCTAGGAATTGAATAGCTGGACTGACAAAAGAACagactgggggaaaaaaaagagggaaaaatcaGCATCCCAGGACATGGAATTCCTGAATTTGGTTCAACTGGGGGGGCTCAGCACTTCTTTATTTCTGAAGAGCTTGATTCCTTTTGTATTTACccaaaaggtttttttccctttggATTTTTCTTCCATCTGGCTGCACCAAAAGTCTGTGGAAAAAGACAGTTGAATGCAGCCTCCGATGTACACAAAAGAATGGGTTTCCATTCAAGGTGGCCATTGGTGGGACAAGCACCAGCGGCACTTTGTGTGATCAGCATGCTACTGTGCCTCCCTCCTGTGTCATGCACAACCTGCCCCCAGAAATGCCGATGTGAAGACCTGCAGTTTTACTGCGACACACAGGGGCTCCTGGCGCCCCCAGACGGTGTGGATAAAGGGGCCCTTGGACTTTCGCTCAGACACAACAGCATCAGCGAGCTCAGCTCAGACCAGTTCTTTGGCTTCACCCAGCTCACTTGGCTTCACCTGGACCACAACCAAATAACCACCGTGCATGAGGATGCCTTCCAGGGGCTGTACAAGCTCAAGGACCTTAACCTGAGCTCAAACCGCATCACCAAGCTGCCAAACACAACCTTCATCCACCTCATCAACCTGCAGATCTTGGATCTCTCCTTCAACCAGATGACAGCTCTGGAGCCTGAGCTCTTTCACGGGCTCCGGAAGCTCCAGATCCTACACCTGCGGTCAAACTCGCTGCGCACGACGCCTGTGCGGGCCTTCTGGGACTGCCGGAGCCTGGAATACCTTGGCCTGAGCAACAACCGGCTCCGTAGCCTGGCCCGGAACGGCTTCGCCGGGTTAATTAAGCTGCGGGAGCTCCATTTGGAACACAATCACTTGACCAAGATTAACTTGGCGCACTTCCCTCGTCTGGTCGCCCTCCAGTTCCTTTATCTTCAGTGGAACAAGATCAACAATTTAACATGCACCATGGAATGGAAATGGACAACTCTGGAGAAACTGGATCTCACTGGGAACGAGATACGTGTACTCACCCCCGATGTGTTTGAAACTTTGCCCAACCTCAAGATCCTGCTGCTGGATAACAACAAACTGTCCAGTCTCGACACACAAACCATGGATATGTGGAAATCCCTAAATGCGATTGGGCTGTCGAGCAACCTATGGGAATGTACCAAACGGATCTGCAATTTGGCCACTTGGCTGAGCACCTTTAAGGGTCGATGGGAGCATTCTATCCTCTGTTACAGCCCTGAGTACGCACAGGGCGAGGAAATACTGGATGCCGTTTACGGATTCCAACTTTGCCAAAATTTCTCGGCCCCGGTCGTACTGACTAGTAGCAGCACGGAGGCCACGCTCCCAGAGATCACAAGCTCTCTCTTTGGAAATATGCAGACCCCTACGCAAGACTTCTATGCAGAGGATTTTGGGAGCTTTACGATTGTCACCACTACTACCACCACGACCCAACCCCCACGCACTGCCCTCGCTACTACCATGACGGTGGAGGGGGCAGATGTTACAGAGGACTACTCTGCGATGGACAACACCGTGCTGACCCAGAGGGTCATAATTGGCACCATGGCTCTGttgttttccttctttctcATCATTTTTGTAGTGTACATATCAAGAAAATGCTGCCCTCCCACTCTGAGGCGTATCCGCCATTGCTCGGCCATTCAGAACCGACGACAGATGAGGACCCAGCAGAGGCAGCCAATGGCGGACCTGGCCACACAGGTGCCCTATAACGAGTACGAGCCCAGTCACGAGGAGGGTGCACTTGTGATCATCAATGGCTACGGGCAGTGCAAATGTCAGCAACTGCCTTACAAAGAGTGTGAAGTATAAACTCTATTTATTCCTGCAGTTTCTGGGTTTAACCATTTGTCCATTTCAAAAAAGATACAGGGTTTgcttttggactttttttccccttttcagTTTGTATGAAGGAGgagtatttctttaaaattgttAGCTTTGGAAATCTAGAAAGCTTGAGATGACTGGGATGAATTTGAAAAGAGGATATATAGAAAAATCCacaagtttatttttgtaatacaaATGCAAAGGTTCATATCTAGCTGGGGCAATCAATCTCAGCAGAGAAAGTTCGGATGCGTCACCGCATCACCAGTTTGTGTACTATGTATTCTGCAGCACAGAGGAGATGAGAAATCTATAGCCAAACCGCCTGGAACCCTGTGCTAAAGAAAACAGTTTATAAAATGACATATCTTCTGATAAA

Function

symbol description
lrrtm2 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human LRRTM2 (leucine rich repeat transmembrane neuronal 2).

NR:

description
PREDICTED: leucine-rich repeat transmembrane neuronal protein 2

GO: NA

KEGG:

id description
K16665 LRRTM1_2; leucine-rich repeat transmembrane neuronal protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246136.1 True 2664 mRNA 0.49 2 21381701 21384924

Neighbor

gene id symbol gene type direction distance location
cisd2 cisd2,LOC107552739,LOC107746991,LOC107556804 coding downstream 685934 20693265 ~ 20695767 (-)
LOC122344926 LOC107730532,LOC107664579,LOC107674210,LOC107746658,LOC107556811 coding downstream 931582 20445132 ~ 20450119 (-)
LOC122345104 LOC107552254,LOC107664557,LOC107730505 coding downstream 947330 20430808 ~ 20434371 (-)
cabp2a cabp2a,LOC107556818,LOC107551591,LOC107730525,LOC107674218,LOC107746641,LOC107664568 coding downstream 953890 20413591 ~ 20427811 (-)
ctnnd1 ctnnd1,LOC107664559,LOC107746596,LOC107674216,LOC107730519 coding downstream 979985 20377317 ~ 20401716 (-)
LOC122348874 LOC107552383 coding upstream 26939 21411863 ~ 21415844 (-)
LOC122342190 LOC107689477,LOC797212,LOC107682957 coding upstream 154842 21539766 ~ 21548066 (-)
smox smox,LOC107689473,LOC107551688,LOC107551695,LOC107692173 coding upstream 183178 21568102 ~ 21577369 (-)
fbxo41 fbxo41,LOC107689471,LOC107692170,LOC108260496 coding upstream 237441 21622365 ~ 21663567 (-)
LOC122342104 LOC107689469,LOC107551743,LOC107719777,LOC797711,LOC107711522,LOC107567046,LOC107692200 coding upstream 291163 21676087 ~ 21679530 (-)
LOC122349798 NA non-coding downstream 662811 20703476 ~ 20718890 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding downstream 679403 20613916 ~ 20702298 (-)
G4934 NA non-coding downstream 912686 20466162 ~ 20469015 (-)
G4930 NA non-coding downstream 921517 20459541 ~ 20460184 (-)
G4924 LOC107556812,LOC107674268,LOC107730535,LOC107552263 non-coding downstream 936907 20442952 ~ 20444794 (-)
G5047 NA non-coding upstream 227994 21612918 ~ 21620581 (-)
G5327 NA non-coding upstream 658978 22043902 ~ 22044137 (-)
G5366 NA non-coding upstream 963590 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 1027538 22412462 ~ 22414007 (-)
G5395 NA non-coding upstream 1049689 22434613 ~ 22438354 (-)
G4958 NA other downstream 694961 20683842 ~ 20686740 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1012590 20367129 ~ 20369111 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other downstream 1068753 20289317 ~ 20312948 (-)
si:dkey-9i23.16 NA other downstream 1241122 20137035 ~ 20140579 (-)
cdk2ap2 cdk2ap2,LOC107684972 other downstream 1842555 19535964 ~ 19539146 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other upstream 164693 21549617 ~ 21564077 (-)
G5104 NA other upstream 333215 21718139 ~ 21766284 (-)
G5108 NA other upstream 339463 21724387 ~ 21772762 (-)
LOC122348907 NA other upstream 376957 21761881 ~ 21799744 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other upstream 874515 22259439 ~ 22328929 (-)

Expression


Co-expression Network