alg11 (alg11,LOC107556718,LOC107588826,LOC107705036)


Basic Information

Item Value
gene id alg11
gene name alg11,LOC107556718,LOC107588826,LOC107705036
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 16069177 ~ 16073920 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246241.1
tgaacATCCGACCAATGGTAAACGCTTCCGGGTTGTGACGTGGGCCGTGTTGTGTTGTCATACTTGAGGAAGATGTCAGCGCACGATCACTTGTCTTTTTGTCTGTGCGATTTAATCAGGTTACTGTGGTCACTGCTGTTGCCATGTTTCTATCTGAGTCTTGCGCTGACTGCcgtcctcttcctcttcatcacGGGAGTGAGGACATGGCTGCagatgaagaggaagagcaGGAGAGCTCAGGACGAGCGGCCCGCTGTGGCCTTCTTCCACCCGTACTGCAatgcaggaggaggaggagagagagtgCTGTGGTGTGCTTTACGCGCTCTTCAAAACAGGTACAAAGATGTGTCCTTCGTGGTGTACACAGGTGATCAGGGTGTGATGGCTGATGAGATTTCAGATAGAGCGTGGCGGCGCTTCAACATCAAACTGCCCCGAGACGTTAAGTTTGTGTTCCTGAAGCACCGTCTCCTGGTGGAGGCCAAACTTTACCCGCACTTCACCCTTCTGGGGCAGAGCGTGGGCTCCATCTTCCTGGGCTGGGAGGCCTTGACCGAGTTTGTTCCAGACCTCTATATCGACTCAATGGGATATGCCTTCACCCTGCCGGTGTTCCGTTATCTGGGTGGATGTCACGTGGGAAGCTATGTGCACTACCCAACCATCAGCACTGATATGCTGTCAGTGGTTCGAGAAAGAAACCCAAGGTTCAATAATGTAGACTACATCTCGAGTAACCCTGTACTGAGTGCCATCAAAGTGATCTACTACTGTGTCTTTGCTCTGCTGTATGGCCTGGCCGGCTCCTGTAGCGATGTAGTCATGGTGAATTCCACCTGGACTTTGGGTCACATCCTGGCTCTGTGGCGCGCTCCTAGCCGCACCACTGTGGTCTATCCACCCTGCGACGTTCAGGCCTTCATGAACATCGAGtttgaggatgaggatgaagagaaggagagaaagaagtGTCATACTCTGGTCTCCGTGGGTCAGTTCCGGCCTGAAAAAGACCATCAGCTGCAGATCAAGGCTTTTAGAAAGCTGCTGGACAGGAGGGGGGCGGAGCCTGCCATTAAGCTGGTGCTGATCGGTGGATGCCGTAACCAGGAAGATGAAGACAGGGTTCAGATGCTGAAGGGACTGTGTCTGGATCTTGGTGTGGCAGATAGGGTGGAGTTTAAACTCAATATCCCATTTGAAGAACTGAAGAAAGAATTAACAGATGCCACGATCGGGCTGCACACAATGTGGAACGAACATTTCGGCATTGGTGTGGTGGAGTGTATGGCTGCAGGAACGATCATCCTGGCTCACAAATCCGGCGGTCCGAAACTGGACATTGTAGTCCCCTATGATAACGGTCCGACTGGCTTCCTGGCGGACGATGAAGACAGTTACGCAGACGCCATGGAACGAATCCTTTCCATGAGCCCTGCGGCTCGATTAGAGATCCGACAGCGGGCACGTCAGTCCGTCAGCCGCTTCTCAGACCAGGAATTCGAAGCCTCGTTTCTTTCAGCCGTGAAGCCTCTAATGTCAACACTAGGACTGTGAGGGACAGAGGAGGGGGTCACGGTGTAGTTCAGTCTAGCTCAGCACGTGCTGACTCCGTAGCGCTTCATACCTGCCTGTCTTGTGAACATTCGCTCTTTAAGTAACAGCACTGAGGTAAGGTAAAAGCATCATGGGAAATGCTAGTTCTGGCGAGGAGCACCTTTCGCTTTAACTTAACGACAGATTGAATGACGGATTGCTGCAAATGAACAGAAAGCGGAAGATTTTGTTTCGTTTAAATgcaaacatgctgttttttcttcatatgttttatatgtacattatatatgaTAGAGTAGTAATGTACTAGCTATGTTTTTTATTGCAACAGGTTTTAGTGGGTTACACAACAAGACTAATGAATCGAAAAGGTTGTTTCTAGGAAGATTCGATATATGCTAGCGGTTTacgttcttcttttttttttctttatacaataaattatatttgagtGGTGATCTGGAAAAATAA
>XR_006251556.1
tgaacATCCGACCAATGGTAAACGCTTCCGGGTTGTGACGTGGGCCGTGTTGTGTTGTCATACTTGAGGAAGATGTCAGCGCACGATCACTTGTCTTTTTGTCTGTGCGATTTAATCAGGTTACTGTGGTCACTGCTGTTGCCATGTTTCTATCTGAGTCTTGCGCTGACTGCcgtcctcttcctcttcatcacGGGAGTGAGGACATGGCTGCagatgaagaggaagagcaGGAGAGCTCAGGACGAGCGGCCCGCTGTGGCCTTCTTCCACCCGTACTGCAatgcaggaggaggaggagagagagtgCTGTGGTGTGCTTTACGCGCTCTTCAAAACAGGTACAAAGATGTGTCCTTCGTGGTGTACACAGGTGATCAGGGTGTGATGGCTGATGAGATTTCAGATAGAGCGTGGCGGCGCTTCAACATCAAACTGCCCCGAGACGTTAAGTTTGTGTTCCTGAAGCACCGTCTCCTGGTGGAGGCCAAACTTTACCCGCACTTCACCCTTCTGGGGCAGAGCGTGGGCTCCATCTTCCTGGGCTGGGAGGCCTTGACCGAGTTTGTTCCAGACCTCTATATCGACTCAATGGGATATGCCTTCACCCTGCCGGTGTTCCGTTATCTGGGTGGATGTCACGTGGGAAGCTATGTGCACTACCCAACCATCAGCACTGATATGCTGTCAGTGGTTCGAGAAAGAAACCCAAGGTTCAATAATGTAGACTACATCTCGAGTAACCCTGTACTGAGTGCCATCAAAGTGATCTACTACTGTGTCTTTGCTCTGCTGTATGGCCTGGCCGGCTCCTGTAGCGATGTAGTCATGGTGAATTCCACCTGGACTTTGGGTCACATCCTGGCTCTGTGGCGCGCTCCTAGCCGCACCACTGTGGTCTATCCACCCTGCGACGTTCAGGCCTTCATGAACATCGAGtttgaggatgaggatgaagagaaggagagaaagaagtGTCATACTCTGGTCTCCGTGGGTCAGTTCCGGCCTGAAAAAGACCATCAGCTGCAGATCAAGGCTTTTAGAAAGCTGCTGGACAGGAGGGGGGCGGAGCCTGCCATTAAGCTGGTGCTGATCGGTGGATGCCGTAACCAGGAAGATGAAGACAGGGTTCAGATGCTGAAGGGACTGTGTCTGGATCTTGGTGTGGCAGATAGGGTGGAGTTTAAACTCAATATCCCATTTGAAGAACTGAAGAAAGAATTAACAGATGCCACGATCGGGCTGCACACAATGTGGAACGAACATTTCGGCATTGGTGTGGTGGAGTGTATGGCTGCAGGAACGATCATCCTGGCTCACAAATCCGGCGGTCCGAAACTGGACATTGTAGTCCCCTATGATAACGGTCCGACTGGCTTCCTGGCGGACGATGAAGACAGTTACGCAGACGCCATGGAACGAATCCTTTCCATGAGCCCTGCGGCTCGATTAGAGATCCGACAGCGGGCACGTCAGTCCGTCAGCCGCTTCTCAGACCAGGAATTCGAAGCCTCGTTTCTTTCAGCCGTGAAGCCTCTAATGTCAACACTAGGACTGTGAGGGACAGAGGAGGGGGTCACGGTGTAGTTCAGTCTAGCTCAGCACGTGCTGACTCCGTAGCGCTTCATACCTGCCTGTCTTGTGAACATTCGCTCTTTAAGTAACAGCACTGAGGAGAGAGAGACGCCAAATTAAACAACAcagaaaagaggaggaggattATAAGAGCCATCACAGTTAAAAACAGGAAGAAAGAGCGTCCGCTGCGATTGAGAGGAAAATGAGGTGCTGTGCGTTTCTCTTCCTGCT

Function

symbol description
alg11 Predicted to enable GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity. Predicted to be involved in oligosaccharide-lipid intermediate biosynthetic process and protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ip. Orthologous to human ALG11 (ALG11 alpha-1,2-mannosyltransferase).

NR:

description
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004377 GDP-Man molecular_function

KEGG:

id description
K03844 ALG11; alpha-1,2-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246241.1 True 2034 mRNA 0.49 5 16070962 16073920
XR_006251556.1 False 1812 transcript 0.52 6 16069177 16073920

Neighbor

gene id symbol gene type direction distance location
snapc3 snapc3 coding downstream 359331 15701109 ~ 15709846 (-)
sugt1 sugt1,sgut1 coding downstream 418868 15632065 ~ 15650309 (-)
dnajb14 dnajb14 coding downstream 442767 15585579 ~ 15626410 (-)
pspc1 pspc1 coding downstream 487636 15527154 ~ 15581541 (-)
cntln cntln,LOC107595061 coding downstream 890731 15097021 ~ 15178446 (-)
c1h3orf70 si:dkey-22o12.2,LOC107588819,LOC107732704,LOC107704345,LOC107699091,LOC107719729,LOC107556711,LOC108435969 coding upstream 235089 16309009 ~ 16321592 (-)
ubac2 ubac2,LOC107704341,LOC107732706,LOC107573193 coding upstream 297568 16371488 ~ 16387107 (-)
dachc dachc,dach1,LOC107732708,LOC107602747,LOC107719724,LOC107699095,LOC108435962 coding upstream 319617 16393537 ~ 16435858 (-)
dis3 dis3,LOC107699072 coding upstream 379843 16453763 ~ 16464140 (-)
dlx2b dlx2b,LOC107699078,LOC107556695,LOC107704335,LOC107602735,LOC107719742,LOC107708688 coding upstream 404622 16478542 ~ 16480216 (-)
G3735 NA non-coding downstream 52018 16016762 ~ 16017159 (-)
G3697 NA non-coding downstream 226367 15842355 ~ 15842810 (-)
G3681 NA non-coding downstream 369215 15699710 ~ 15699962 (-)
G3679 NA non-coding downstream 370166 15698487 ~ 15699011 (-)
G3678 NA non-coding downstream 370872 15696585 ~ 15698305 (-)
G3739 NA non-coding upstream 1386 16075306 ~ 16078797 (-)
G3758 NA non-coding upstream 34406 16108326 ~ 16108610 (-)
G3760 NA non-coding upstream 37218 16111138 ~ 16111548 (-)
G3819 NA non-coding upstream 190172 16264092 ~ 16264358 (-)
G3832 NA non-coding upstream 226484 16300404 ~ 16300673 (-)
G3571 NA other downstream 838291 15230539 ~ 15230886 (-)
G3515 coro2a other downstream 1039557 15020642 ~ 15029620 (-)
G3522 NA other downstream 1143814 14925085 ~ 14925363 (-)
cxxc4 cxxc4,LOC107695705 other downstream 1150391 14898201 ~ 14918786 (-)
G3491 gpank1 other downstream 1320202 14746829 ~ 14748975 (-)
march4l zgc:153256,march9,LOC107719730,LOC107654275,LOC107556712,LOC107707834,LOC107699089 other upstream 85772 16159692 ~ 16198263 (-)
igf2bp2b igf2bp2b,LOC107704342,LOC107573191,LOC107699092,LOC107556709 other upstream 260282 16334202 ~ 16359025 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 373168 16447088 ~ 16448519 (-)
LOC122330431 lsm6 other upstream 1360797 17434717 ~ 17436707 (-)
smad1 smad1,LOC107684445,LOC107734580 other upstream 1671917 17745837 ~ 17764732 (-)

Expression


Co-expression Network