LOC122350179 (rhoh,LOC107548321,LOC107598269,LOC107757583)


Basic Information

Item Value
gene id LOC122350179
gene name rhoh,LOC107548321,LOC107598269,LOC107757583
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 30319081 ~ 30321983 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246511.1
GACATGTGTCTTCTGTTTCTTTGCCGCACTGCCTGAATTAGTTGCATGTATGAGTTCTAGACTGCAGAAGAAGCGAGGATCAACACTGTAGATGTGCTTAGAACGTCACAGCGGAAGCTTAGTAGAGATTTGATGTACGATTTTACAGAGAAAAAAGCCCAGCCTCGCATCTCATTTCCCTCTACTAGAGGATGTAATATATGCTCTGGCTGTGAAGGCATGTTTTCTCTCTGTGCTTAAGAGTATTTGAATTTCCTGAGTTTAACAGCTGAACTTCGGAGAAATATGCAGCTTTGGACTGAGCTCTGATCCTCTCTGAAAGCTTAATTAAATGACACAGTATTACAAGTTAAACTGAGCTTTACGTGAACTTGCCAATCTCACAGTTGAAAAGATCAAAGAGGAGTCAAGGAGAGTACAGCGAAAGATACGGCTGAGTGACTTCTCACTTCTGGATTTCTGTCTTCAATATCTCTAATGGTACATAATGAGTTTCTAAACCTTTCACCGGAATACAGAGCCACGTCACAAGACGAAGAGCCTGAAGAAGACCTCAGAATGCTGTTTTACTTGCAGGGGTTTTGCTCTTAGTTCTGCACACCTTGAATTACGACGATGGCCTCATCATCTGTTGGACGCCGctcatatattttttagaagCATTAGACTGtactttataataactacaaCACCAGAGACGGAAGAATGAATGGGTTGGCAGAGACCTCAGTGAAATGCGTACTGGTCGGAGACTGTGCAGTGGAAACTGCGCTTCTTGTACGATTCACTTCTGAAACGTTCCCGGACAGCTACAGACCGACTGTGTACGAGAACACTGGCGTCGACGTTTTCATGGATGGAATCCAGATCAGCTTGGGATTGTGGGATACGGCAGGACATGATACGTTCCGCCAAATCCGGCCCATGTCCTATCAGCAGGCCGACGTGGTTTTGCTGTGTTACTCTGTGGCGAATCCAAATTCGTTAAACAATTTGCGGCAAAAATGGATCGCTGAAGTGAGGGAATTTCTCCCGAAAGTACCTGTGCTGGTCGTCGCCACACAGACGGACCATCGCGAAATGGGCCCTTATCGTGCTAACTGCACCACGGCCTCCGAGGGCAAGCAGGTGGCACAGGAGATCCGTGCCAAGGGATATCTGGAATGCTCTGCTCTCAGCAATCGTGGCGTGCAACAGGTTTTCGAGTGTGCCGTTCGGACGGCTGTTAATCGGGCACGAAGACGGAGGAGGAGACTGATGGACCTTAACCCCTGTAAAATCTCCTGATGATTTTAAGAGAGGGATGGTGTTAATTCTCATCACTAAGACAGAATTGTTTCTCTCACGAAACCAAGTATTTGAAGCCTCAACAAAGACTTCTCAACACTGATGTCTAAAAATGGTTTACTTAACTGTTATACTGTCTGCTAGTTCTGACTATGTATTAGACACGTTACAGACATTGATCAGGTATTTATTC

Function

symbol description
rhoh Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; cytoskeleton organization; and engulfment of apoptotic cell. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Human ortholog(s) of this gene implicated in epidermodysplasia verruciformis. Orthologous to human RHOH (ras homolog family member H).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoH-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07873 RHOH, TTF; Ras homolog gene family, member H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246511.1 True 1480 mRNA 0.45 3 30319081 30321983

Neighbor

gene id symbol gene type direction distance location
LOC122350995 LOC107660492,LOC107757584,LOC107700259,LOC107548308 coding downstream 5030 30307963 ~ 30314051 (-)
LOC122351861 primpol,LOC107656685,LOC107702393,LOC107750460 coding downstream 153731 30155709 ~ 30165350 (-)
LOC122349594 si:ch211-15j1.5,LOC107574374,LOC107576777,LOC107725412,LOC100334101 coding downstream 470701 29845625 ~ 29848380 (-)
LOC122357555 sh2d3a,LOC107685029,LOC107662707,LOC107560576 coding downstream 486933 29822257 ~ 29832148 (-)
LOC122324036 LOC107571898,LOC107659785,LOC107659779,LOC107576778,LOC107571412,LOC107574527,LOC107675009 coding downstream 507562 29809374 ~ 29811519 (-)
LOC122350704 n4bp2,LOC107700258,LOC107598270,LOC107757609,LOC107598268 coding upstream 1336 30323319 ~ 30324865 (-)
trnar-ucg_101 NA coding upstream 36096 30358079 ~ 30358151 (-)
trnaq-uug_9 NA coding upstream 36412 30358395 ~ 30358466 (-)
trnar-ucg_102 NA coding upstream 37837 30359820 ~ 30359892 (-)
trnaq-uug_10 NA coding upstream 38623 30360606 ~ 30360678 (-)
G7824 NA non-coding downstream 28044 30290710 ~ 30291037 (-)
G7822 NA non-coding downstream 34731 30283969 ~ 30284350 (-)
G7817 NA non-coding downstream 75757 30195990 ~ 30243324 (-)
G7813 NA non-coding downstream 141133 30169979 ~ 30177948 (-)
LOC122351882 NA non-coding downstream 196381 30122289 ~ 30122700 (-)
G7864 NA non-coding upstream 141340 30463323 ~ 30523613 (-)
G7866 NA non-coding upstream 237267 30559250 ~ 30559552 (-)
G7874 NA non-coding upstream 334473 30656456 ~ 30661467 (-)
G7988 NA non-coding upstream 520995 30842978 ~ 30843402 (-)
G7989 LOC107746637,LOC107691606 non-coding upstream 521734 30843717 ~ 30844170 (-)
G7816 NA other downstream 121233 30192201 ~ 30197848 (-)
G7648 LOC107662685,LOC107678949 other downstream 842743 29426098 ~ 29476338 (-)
G7655 LOC107662685 other downstream 843693 29452759 ~ 29475388 (-)
LOC122354733 LOC107678949,LOC107566822,LOC107713175,LOC107662686,LOC107758373,LOC107574162,LOC107662685 other downstream 884868 29411107 ~ 29434213 (-)
G7569 gtf3c1,LOC107678316 other downstream 1008483 29301807 ~ 29310598 (-)
G7868 NA other upstream 308251 30630234 ~ 30630505 (-)
G8009 NA other upstream 621515 30943498 ~ 30957486 (-)
G8091 abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823 other upstream 1210086 31532069 ~ 31537416 (-)
G8089 abca1a,LOC107571910,LOC107703854,LOC108413301 other upstream 1228203 31550186 ~ 31554035 (-)
LOC122349741 NA other upstream 1300691 31622674 ~ 31626684 (-)

Expression


Co-expression Network