LOC122350383 (khsrp,LOC107703803,LOC107594262,LOC107700847,LOC107598477)


Basic Information

Item Value
gene id LOC122350383
gene name khsrp,LOC107703803,LOC107594262,LOC107700847,LOC107598477
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26778467 ~ 26786900 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246804.1
CCATGCGTTTGTCTCGCTCGTCTTCCCGCGTCTGCGCACCTCCGCCAGGCCTAGAGCTCCCCGCCGTCTCCCGCACACTTCACCCTCCGCACGGACAGCATGTCAGAGTACAGCGCGGTGCCGCCGCCCGGCGCCGGAGCGGCTTTAGGAGCCGGTGGACTCAAGAAAGACGCGTTCGCCGACGCGGTGCAGCGCGCGCGGCAGATTGCAGCAAAGATCGGCGGAGACGTCACGGGTCCCCCCATGAGCAATAACGGCGGAGCGGAGAGCTATCCCTTCGCGGCACAGAAGCGATCGTTGGAGGACGGAGaTCAGCCCGAGAGCAAGAAGATGGCATCCGACAGAGACAATGCTTCAGCGCTGTCAATCGGAGCCCAGCTGGCTGCCCTTTCCCAGCAGAGtGTACGTCCCTCGTCTCTCACAGAAGAGTACAGAGTCCCCGACGGCATGGTTGGGCTCATCATTGGTCGAGGAGGAGAGCAGATCAATAAGATCCAGCAGGAGTCTGGTTGTAAAGTTCAGATCGCTCCAGaCAGCGGTGGTCTTCCAGACAGGAGCGTGTCTCTCACCGGCGGCCCTGAAGCCATCCAGAAGGCCAAAATGCTGCTGGATGACATCGTCTCCCGGGGGCGGGGCACCCCGCCATCCTTCCACGAGTCGACCAATGGGAGCGGCCACATGCAGGAAATGATCATTCCGGCAGGGAAAGCGGGTCTCATCATCGGCAAAGGAGGAGAGACCATTAAACAGCTACAGGAGCGCGCTGGCGTGAAGATGATTTTGATTCAGGATGCTTCTCAGGGGCCAAACATGGACAAACCTTTGCGCATCATTGGAGATCCTTACAAAGTTCAGCAAGCGCGTGAGATGGTGCAGGAGATCCTGCGGGAGCGGGACCACCCCGGCTTCGACAGAAACGAGTACGGCTCTCGAATAGGTGGAGGCATTGAGGTGCCGGTGCCGCGTCACTCGGTGGGTGTTGTGATCGGCCGAAGTGGAGAGATGATCAAGAAGATTCAGAACGATGCCGGCGTGAGGATACAGTTTAAACCAGATGACGGTACCGGTCCAGATAAGATCGCTCACATAATGGGTCCCCCGGACCGCTGCGAACACGCTGCCAGCATCATCAACGACCTTCTGCAGAGCATCAGAGTACGAGAGGAAGGAGGAGGGGGTCCCCCCGGTCCTCCGGGCACGGGCATGCCTCCGGGTGGGCGTGGCAGGGGGCGTGGCCCAGGTAACTGGGGCCCTCCTGGCGGAGAGATGACCTTTTCGATCCCCGCCCACAAATGCGGCCTGGTGATCGGCCGAGGCGGCGAGAACGTGAAGGCCATCAACCAGCAGACGGGCGCCTTCGTGGAGATCTCGCGCCAGCCGCCGCCCAACGGCGACCCCAACTTCAAACTGTTTACCATCCGGGGATCTCCTCAGCAGATCGACCACGCCAAACAGCTGATCGAGGACAAGATCGAGGGTCCCCTGTGCCCTGTCGGACCTGGCCCGGGTGGACCGGGCCCCGCTGGTCCCATGGGCCCTTACAACCCCAACCCGTACCAGCCCGGGCCCCCTGGTGGACCCCCACAcggGGGTCCTCCTGGCGGTCAGTATCCTCAGGGCTGGGGAAACGCTTACCAGCAGTGGCAGCCGCAAGATCCCAgTAAAGCGGCAGCGGATCATAACGCAGCGTGGGCAGCTTATTACGCACAGTACTACCAGCAGCCCGGAGGGGGCGCCATGCCCGGACAGACGCCCGCGGCCCAGCCTGCCGCTCCCGCTCCCGCTGACCAGAGCCAAGCTGCTCCCGGAGCCGCTCAGCCCGACTACACCAAGGCCTGGGAGGAGTACTACAAGAAGATGGCCGCCgcaggaggaggtggaggaggaggaggtggaggcgCTGCTCCCGCCGCCGGAGGAGCTCAAGCCCCGGGAGCCGCAGCAGCGGGACAGACCGACTACAGCGCCGCCTGGGCCGAGTACTACAGACAGCAGGCCGCTTACTACGGACAGACGGGACAGGCCGCGGGTCAGCCGGGCGCCACACCACAGGGCcagcagGCGCAGTAAAGTGACGGCTGAGCTCCTTCCCTCCATCCTCTCACAAAAGGACTTCTGCTCTTCccgttttgttttctttctcacatCCAGCTGAaaagcgctctctctctctgtctctctctctctctcctctgagGCTGGATTTCTGTCCTGAAACGTTACGGCTTCTTCAAAAGACTCTTGTTTCTCCTCCTGGTTTTTGCTGGATCCACAAGCGCTGATGGACTAAACTCAAACGCTTCgtccctcctcttcctcacgtCAGTGTGACTCATGGCCAGGAGACACAAGGGAATGCTTCTAACTTCCTCACATGAGCGTgcacttcctgttttttttttttttgctgttatttgttGAGGAAACAGGTCCATTTAGAGGAAATCTTCAGGTGTTAATAACTACTGTGTTTCAAACTCAATGAATAaccatgtctttttttttttttttttttttttttttttttttttttttttttttaaatgccttttgcTTTTAGTCCTTTTAAGTTGATTTGAGCTGGAACATTCCCATTGTTTAATGTGTTCACTTTCTATTCATTTAGTgaggtttttttaatgtgatttctCCTGTGATATCAAATGgggtttcagtgtgtgtgtgtctcttgtgtgctgtgtgtgtgtgcgcgcgagtGTGTTCTGATACTGAAACTCAAACTGTGTTGCTCCTCACTCTGTGAAATGagggtttctttttctttttccttcccGCCCCAAGTTATTGGAAGTCAtgatgttataaatatataaattgtatgctttttttttactgcttgtttttaaaaactacaaaataaacattacaaaatccTCATCTGA
>XM_043246813.1
CCATGCGTTTGTCTCGCTCGTCTTCCCGCGTCTGCGCACCTCCGCCAGGCCTAGAGCTCCCCGCCGTCTCCCGCACACTTCACCCTCCGCACGGACAGCATGTCAGAGTACAGCGCGGTGCCGCCGCCCGGCGCCGGAGCGGCTTTAGGAGCCGGTGGACTCAAGAAAGACGCGTTCGCCGACGCGGTGCAGCGCGCGCGGCAGATTGCAGCAAAGATCGGCGGAGACGTCACGGGTCCCCCCATGAGCAATAACGGCGGAGCGGAGAGCTATCCCTTCGCGGCACAGAAGCGATCGTTGGAGGACGGAGaTCAGCCCGAGAGCAAGAAGATGGCATCCGACAGAGACAATGCTTCAGCGCTGTCAATCGGAGCCCAGCTGGCTGCCCTTTCCCAGCAGAGtGTACGTCCCTCGTCTCTCACAGAAGAGTACAGAGTCCCCGACGGCATGGTTGGGCTCATCATTGGTCGAGGAGGAGAGCAGATCAATAAGATCCAGCAGGAGTCTGGTTGTAAAGTTCAGATCGCTCCAGaCAGCGGTGGTCTTCCAGACAGGAGCGTGTCTCTCACCGGCGGCCCTGAAGCCATCCAGAAGGCCAAAATGCTGCTGGATGACATCGTCTCCCGGGGGCGGGGCACCCCGCCATCCTTCCACGAGTCGACCAATGGGAGCGGCCACATGCAGGAAATGATCATTCCGGCAGGGAAAGCGGGTCTCATCATCGGCAAAGGAGGAGAGACCATTAAACAGCTACAGGAGCGCGCTGGCGTGAAGATGATTTTGATTCAGGATGCTTCTCAGGGGCCAAACATGGACAAACCTTTGCGCATCATTGGAGATCCTTACAAAGTTCAGCAAGCGCGTGAGATGGTGCAGGAGATCCTGCGGGAGCGGGACCACCCCGGCTTCGACAGAAACGAGTACGGCTCTCGAATAGGTGGAGGCATTGAGGTGCCGGTGCCGCGTCACTCGGTGGGTGTTGTGATCGGCCGAAGTGGAGAGATGATCAAGAAGATTCAGAACGATGCCGGCGTGAGGATACAGTTTAAACCAGATGACGGTACCGGTCCAGATAAGATCGCTCACATAATGGGTCCCCCGGACCGCTGCGAACACGCTGCCAGCATCATCAACGACCTTCTGCAGAGCATCAGAGTACGAGAGGAAGGAGGAGGGGGTCCCCTGTGCCCTGTCGGACCTGGCCCGGGTGGACCGGGCCCCGCTGGTCCCATGGGCCCTTACAACCCCAACCCGTACCAGCCCGGGCCCCCTGGTGGACCCCCACAcggGGGTCCTCCTGGCGGTCAGTATCCTCAGGGCTGGGGAAACGCTTACCAGCAGTGGCAGCCGCAAGATCCCAgTAAAGCGGCAGCGGATCATAACGCAGCGTGGGCAGCTTATTACGCACAGTACTACCAGCAGCCCGGAGGGGGCGCCATGCCCGGACAGACGCCCGCGGCCCAGCCTGCCGCTCCCGCTCCCGCTGACCAGAGCCAAGCTGCTCCCGGAGCCGCTCAGCCCGACTACACCAAGGCCTGGGAGGAGTACTACAAGAAGATGGCCGCCgcaggaggaggtggaggaggaggaggtggaggcgCTGCTCCCGCCGCCGGAGGAGCTCAAGCCCCGGGAGCCGCAGCAGCGGGACAGACCGACTACAGCGCCGCCTGGGCCGAGTACTACAGACAGCAGGCCGCTTACTACGGACAGACGGGACAGGCCGCGGGTCAGCCGGGCGCCACACCACAGGGCcagcagGCGCAGTAAAGTGACGGCTGAGCTCCTTCCCTCCATCCTCTCACAAAAGGACTTCTGCTCTTCccgttttgttttctttctcacatCCAGCTGAaaagcgctctctctctctgtctctctctctctctcctctgagGCTGGATTTCTGTCCTGAAACGTTACGGCTTCTTCAAAAGACTCTTGTTTCTCCTCCTGGTTTTTGCTGGATCCACAAGCGCTGATGGACTAAACTCAAACGCTTCgtccctcctcttcctcacgtCAGTGTGACTCATGGCCAGGAGACACAAGGGAATGCTTCTAACTTCCTCACATGAGCGTgcacttcctgttttttttttttttgctgttatttgttGAGGAAACAGGTCCATTTAGAGGAAATCTTCAGGTGTTAATAACTACTGTGTTTCAAACTCAATGAATAaccatgtctttttttttttttttttttttttttttttttttttttttttttttaaatgccttttgcTTTTAGTCCTTTTAAGTTGATTTGAGCTGGAACATTCCCATTGTTTAATGTGTTCACTTTCTATTCATTTAGTgaggtttttttaatgtgatttctCCTGTGATATCAAATGgggtttcagtgtgtgtgtgtctcttgtgtgctgtgtgtgtgtgcgcgcgagtGTGTTCTGATACTGAAACTCAAACTGTGTTGCTCCTCACTCTGTGAAATGagggtttctttttctttttccttcccGCCCCAAGTTATTGGAAGTCAtgatgttataaatatataaattgtatgctttttttttactgcttgtttttaaaaactacaaaataaacattacaaaatccTCATCTGA

Function

symbol description
khsrp Enables mRNA 3'-UTR AU-rich region binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in cytoplasm and nucleus. Orthologous to human KHSRP (KH-type splicing regulatory protein).

NR:

description
PREDICTED: far upstream element-binding protein 2-like isoform X7

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13210 FUBP; far upstream element-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246804.1 True 2903 mRNA 0.56 18 26778467 26786900
XM_043246813.1 False 2603 mRNA 0.55 17 26778467 26786900

Neighbor

gene id symbol gene type direction distance location
crtac1a crtac1a,LOC107700849,LOC107598482,LOC107747162 coding downstream 4647 26767286 ~ 26773820 (-)
avpi1 LOC107730030,LOC107700857,LOC107598489,LOC107703811 coding downstream 39427 26734472 ~ 26739040 (-)
cdc25d LOC107598551,LOC107700789,LOC107729831 coding downstream 51035 26722519 ~ 26727432 (-)
pgam1b pgam1b,pgam1a,pgam1,LOC107700858,LOC107598490,LOC107703810,LOC108258456 coding downstream 56638 26718192 ~ 26721829 (-)
exosc1 exosc1,LOC107700859,LOC107598491 coding downstream 60766 26712846 ~ 26717701 (-)
slc25a23a slc25a23a,LOC107747161,LOC107594260,LOC107703801 coding upstream 408 26787308 ~ 26798014 (-)
vps54 vps54,LOC107709616,LOC107700845,LOC107598476 coding upstream 16508 26803408 ~ 26819171 (-)
peli1a peli1a,LOC107700844,LOC107747159,LOC107598475,LOC107709617,LOC107594259,LOC107703798 coding upstream 34173 26821073 ~ 26833754 (-)
sertad2a NA coding upstream 63329 26850229 ~ 26853814 (-)
rab1aa rab1a,LOC107598472,LOC107747156,LOC105021598,LOC107666439,LOC107676578,LOC107594256,LOC107601860 coding upstream 70557 26857457 ~ 26861770 (-)
G6870 NA non-coding downstream 13987 26760004 ~ 26764480 (-)
G6874 NA non-coding downstream 20175 26754732 ~ 26758292 (-)
G6873 NA non-coding downstream 29511 26748723 ~ 26748956 (-)
G6827 gprc5b,gprc5bb,LOC107729503,LOC107578286,LOC107700862,LOC107598492,LOC107709629,LOC107703814 non-coding downstream 71639 26653242 ~ 26706828 (-)
G6856 LOC107736226,LOC107598471,LOC107700840 non-coding upstream 23048 26809948 ~ 26865737 (-)
G6887 NA non-coding upstream 146232 26933132 ~ 26942207 (-)
G6923 NA non-coding upstream 207538 26994438 ~ 26994699 (-)
G6926 NA non-coding upstream 219747 27006647 ~ 27007143 (-)
G6927 NA non-coding upstream 220603 27007503 ~ 27007987 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 255065 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 360570 26416859 ~ 26417897 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other downstream 642981 26130788 ~ 26135486 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other downstream 914680 25831324 ~ 25863787 (-)
LOC122353196 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 1062763 25714102 ~ 25715704 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other upstream 15010 26801910 ~ 26802954 (-)
si:ch211-286b5.5 NA other upstream 130769 26917669 ~ 26920034 (-)
LOC122349164 NA other upstream 197644 26984544 ~ 26992582 (-)
LOC122344379 NA other upstream 409338 27196238 ~ 27202628 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 453424 27240324 ~ 27255067 (-)

Expression


Co-expression Network