tm9sf2 (tm9sf2,LOC107654273,LOC107556717,LOC107719731,LOC107705039,LOC107588853,LOC107707817)


Basic Information

Item Value
gene id tm9sf2
gene name tm9sf2,LOC107654273,LOC107556717,LOC107719731,LOC107705039,LOC107588853,LOC107707817
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 16093202 ~ 16104199 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247168.1
TGACGTGTCTGAGGAGTCAGATGCTGCTACGCAGGCAGCGGTTTCGCTAGCGCTTGTGCTCAGATACCACCAATGTCTGAATTCTGACACGCATATCTACATTCTCCGCATGTAAATACATCTGCCGAATCCTTAACCGGTCCGTCGAGGCAAAATGGTCGTGTTCCACCGTTTCCGTGTcgtgtttttgttgctttttgtgTGCGGATCGCTGCGGGACGCGTTGAGTTTCTATCTTCCTGGTTTGGCCCCGGTCAGCTTCTGTGAGAAAGAAGAGGGCGATAAAAACAGCGACGTGCCAGACTGCAAGTCTACCATTGAGCTCTTTGTGAACAGGCTGGATTCTGTGGAATCTGTTTTGCCCTATGAATACACCGCGTTTGATTTTTGTGCTGATGTATCTGAGAAACGTCCATCTGAGAACTTGGGTCAAGTGTTGTTTGGAGAAAGAATAGAGCCGTCCCCGTACAAGTTTTCCTTCAAGAAGAATTTTGAGTGTCAGAATGTCTGTCTTAAACCTTACAACACCGAGAAAGCCGAGGATAAGGCCAAGCTGGAATTTCTCAAGAAGGGAATGCTCCTCAATTACCAGCACCACTGGATTGTGGATAATATGCCGGTGACCTGGTGTTACGATGTGGAGGACAATCAGAAGTTCTGTAATCCAGGCTTCCCCATCGGTTGCTATGTCACAGACACGGGACGGGCCAAAGATGCCTGTGTGGTCAATGCTGACTTCAATGACAAAGACACCTTCTACATCTTCAACCATGTGGACATCACTATTTTCTACCATGTGGTGGAAAACGAGGCTGCCGGTGCCAGACTGGTTGCAGCTAAATTAGAGCCCAAGAGCTATAAGCACACTAACTTGGAGAAACCGGACTGCACAGGACCTCCCATGAGTCTGAGCAACAAGTTCAGTGGAGAAATCAAGATTCCCTACACGTACTCCGTCAAGTTTGTGGAGGACAAACTGATTCGCTGGGCCTCTAGATGGGATTACATTCTTGAGTCTATGCCGCACACCAACATTCAGTGGTTTAGTATCATGAACTCTTTGGTCATCGTACTCTTCCTCTCTGGAATGGTTGCTATGATTATGCTTCGGACGCTCCATAAAGACATCGCCAGATACAACCAGATGGACTCTGTGGAGGATGCCCAGGAGGAATTTGGCTGGAAGCTTGTTCACGGAGACGTCTTCAGGCCTCCCAGAAAAGGCATGCTGCTGTCTGTGTTCCTGGGCTCTGGCACTCAGATCTTCATCATGACATTCGTTACTCTCTTTTTTGCCTGTTTGGGTTTCCTGTCACCTGCTAACCGCGGGGCTCTGATGACGTGTGCAGTGGTGCTGTGGGTGCTCCTGGGTACTCCAGCTGGTTATGTGGCTGCCCGCTACTACAAATCCTTCGGTGGGGAGAAGTGGAAGACCAATGTCCTGTTGACAGCGTTTCTCTGTCCAGGGGTGGTGTTTGCTGATTTCTTCGTAATGAATCTGATTTTGTGGGGTGAAGGTTCATCAGCCGCCATGCCCTTTGGCACTCTAGTGGCCATCCTGGCTCTGTGGTTCTGTATCTCAGTGCCCCTCACTTTTATCGGAGCCTACTTCGGTTTTAAGAAGAGTGGCATTGAACATCCTGTGCGGACTAATCAGATCCCCAGACAGATTCCAGAGCAGTCCTTCTACACCAAACCTCTTCCTGGCATCGTCATGGGTGGAATCCTGCCGTTCGGCTGCATCTTCATCCAGCTCTTCTTCATCCTCAACAGCATTTGGTCTCATCAGATGTACTATATGTTTGGCTTCCTCTTCCTGGTCTTCATCATCCTGGTCATCACCTGCTCTGAGGCCACGATCCTCCTCTGCTACTTCCACCTGTGTGCTGAGGACTATCACTGGCAGTGGCGCTCCTTCCTTACCAGCGGGTTCACAGCTGTTTATTTCCTGGTCTATGCCATCCATTACTTCTTCTCTAAGCTGCAGATCAGTGGACTTGCCAGCACTATTCTTTACTTCGGCTACACCATGATCATGGCACTCATCTTCTTCCTGTTCACAGGTACAATTGGATTTTTTGCCTGCTTTTGGTTTGTCACCAAGATCTACAGCGTGGTCAAAGtggattaaataaaaacaatctcATATAAGACTGAACTGTTCGACGCCCAATGAGAGATTCCGTAGGGAGGGACCTGAGCGCTGTTTAACTTTATCTGTTGCCACGGCGACTCTGCTTTACACCAACAACTCTGAATCAACAAATTCCATTTcctttgctgtgtgtgtgtgtgtgtgtgtgcgtgcgcgcgtgcgtgtgCGCATTAGTAGTGCATATTCAACCATTTGAAGAAATTGACACATCTGCTTTCTTTAATTGGAACAGAATACAGCAGACATGCACATTGGCCACTACGACGAGTAATTAAGATTTGGAGTTTTCCCTtgtaaatattactttattctTTTGCTAACATTGTAATGAAAGGGTAATGcataaattacaaagaaaactaGCTCCAGTTATCGAATCTTCACGGTGTCAGAAGTGTGATTTttgtaaatagcatttttttttttccttaaatgcatcgaaaaaaagaaactagagattaaaaatggaaagactttgttttgagttgatttaaGAGCGAGGCTGTGTGAAATTTCTTTCCATCatgtttatactgtaaaattactgcTTGCGCATTCTTGTGTATAACCAGTGGGAGGAATGTCtatttaactttttgtttggtcatttttttcttgtcgTTTCTGTTCATGCCTCAACACATCGCGTGCCTCATTATCACAGGAAAATCAAGCCCATTTAATTCGGTGAAGAACGAGTTGGTGAAAATGTGAAGTTCCCCGTCCATACACAGGGGTACTGGAGTGAAATGAttttctttgtatatatatgcacagcATTTAAACGTGTGCCCATGAACTACATTAGCTTGGCCACTTTCAGTTTGTCTTCTCTGATTTTGAGGTAACGAGATtacaagaaaaatattagaaataaaaccTCCTTGTCTCCAAATCATTAGA

Function

symbol description
tm9sf2 Predicted to be involved in protein localization to membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human TM9SF2 (transmembrane 9 superfamily member 2).

NR:

description
PREDICTED: transmembrane 9 superfamily member 2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17086 TM9SF2_4; transmembrane 9 superfamily member 2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247168.1 True 3058 mRNA 0.46 17 16093202 16104199

Neighbor

gene id symbol gene type direction distance location
zc3h13 zc3h13,LOC107588823,LOC107707838,LOC107654272,LOC107719732,LOC107705029,LOC107556716 coding upstream 295 16079410 ~ 16092907 (+)
cpb2 cpb2 coding upstream 14409 16074315 ~ 16078793 (+)
raph1b raph1b,LOC107707841,LOC107588825,LOC107719733,LOC107556694,LOC107654246 coding upstream 28930 16023939 ~ 16064272 (+)
psip1a psip1,LOC107658176,LOC107572235,LOC107742007,LOC108439950 coding upstream 402355 15657297 ~ 15690847 (+)
spag5 LOC107714621,LOC107695699,LOC107595089 coding upstream 1043279 15038404 ~ 15049923 (+)
zic2b zic2b,LOC107707837,LOC107588821,LOC107654274,LOC107699076,LOC107719739 coding downstream 12891 16117090 ~ 16119734 (+)
pcca pcca,LOC107707835,LOC107719738,LOC107654247 coding downstream 16994 16121193 ~ 16160604 (+)
vps8 vps8,LOC107699090,LOC107719737,LOC107710204 coding downstream 104709 16208908 ~ 16298842 (+)
tmem41ab tmem41ab,tmem41a,LOC107588818,LOC107732701,LOC107704344,LOC107556698 coding downstream 226874 16331073 ~ 16338488 (+)
gpr183b gpr183b,LOC107732705,LOC107573195,LOC107704340,LOC107719726,LOC107699093 coding downstream 276187 16380386 ~ 16383277 (+)
G3705 NA non-coding upstream 72685 16020169 ~ 16020517 (+)
G3696 NA non-coding upstream 250403 15842311 ~ 15842799 (+)
G3695 NA non-coding upstream 254606 15838358 ~ 15838596 (+)
G3693 NA non-coding upstream 335057 15757933 ~ 15758145 (+)
G3680 NA non-coding upstream 393768 15699223 ~ 15699434 (+)
G3707 NA non-coding downstream 873 16105072 ~ 16105273 (+)
G3846 NA non-coding downstream 409751 16513950 ~ 16515088 (+)
G3902 NA non-coding downstream 518618 16622817 ~ 16701710 (+)
G3952 NA non-coding downstream 699188 16803387 ~ 16805316 (+)
G3987 NA non-coding downstream 722828 16827027 ~ 16827368 (+)
LOC122348759 raph1b,LOC107654246,LOC107707841,LOC107719733,LOC107705038 other upstream 23287 16064271 ~ 16069915 (+)
G3647 NA other upstream 439821 15653093 ~ 15653381 (+)
G3599 NA other upstream 594522 15478098 ~ 15498680 (+)
bnc2 bnc2,LOC107595060,LOC107737409,LOC107737408,LOC107678088,LOC107598241 other upstream 775578 15178603 ~ 15317624 (+)
hemgn hemgn,trmo other upstream 1058402 15030944 ~ 15034800 (+)
gab1 gab1,LOC107725185,LOC107734574,LOC107684448 other downstream 1447274 17551473 ~ 17610745 (+)
lsm6 lsm6 other downstream 1792336 17896535 ~ 17898546 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other downstream 2143051 18247250 ~ 18284644 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other downstream 3416885 19521084 ~ 19522399 (+)
scoca scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533 other downstream 3611354 19715553 ~ 19777050 (+)

Expression


Co-expression Network