LOC122350704 (n4bp2,LOC107700258,LOC107598270,LOC107757609,LOC107598268)


Basic Information

Item Value
gene id LOC122350704
gene name n4bp2,LOC107700258,LOC107598270,LOC107757609,LOC107598268
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 30323319 ~ 30324865 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247390.1
CCATGCAGATATTCCAGAGAGTGAATGCTTCACTTCTGCCTCAGAATATTCTAGATCTCCATGGACTGCATGTGGATGAGGCCATTCATCATCTTGGTCAGGTTCTCAGAGGCAAGAATTTAGaattcaGCCAGGGTTTGTGTCAGCCTCAGATGTCAATCATTACAGGAAGAGGCAATCGCAGCCAAGGGGGAGCGCGCATCAGGCCTGCTGTACTAGACTACCTCAAAAATCATCACTACAGTTTTTCTGAACCTAAGACTGGATTGGTGTTGGTCACACTTCATAAAGAGCTGCTACAATGAAGcatttaattaagatttttctCTTCCCACTGCCTTAATCCAAAGTGTCTTCTCTGTAGACTAATAGTGCCAGTAATTATAGAAcagtattttcatgtttttctgtaATTGGGCACAAATTTATCCaagtcataaaaaaatgaaggtactacatatttacagtgttttatatGGCATTGACctgtacatacatattattctttattgaatgttttttgaTGCTTCCTTATGAGGCCATTAAGGTATCCTACTGATCCTACTTCCTAACTGTAATCACTACAATTTTTACgtaattctgtttttct

Function

symbol description
n4bp2 Predicted to enable ubiquitin binding activity. Is expressed in axis; floor plate; and hypochord. Orthologous to human N4BP2 (NEDD4 binding protein 2).

NR:

description
PREDICTED: NEDD4-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247390.1 True 610 mRNA 0.38 3 30323319 30324865

Neighbor

gene id symbol gene type direction distance location
LOC122350179 rhoh,LOC107548321,LOC107598269,LOC107757583 coding downstream 1336 30319081 ~ 30321983 (-)
LOC122350995 LOC107660492,LOC107757584,LOC107700259,LOC107548308 coding downstream 9268 30307963 ~ 30314051 (-)
LOC122351861 primpol,LOC107656685,LOC107702393,LOC107750460 coding downstream 157969 30155709 ~ 30165350 (-)
LOC122349594 si:ch211-15j1.5,LOC107574374,LOC107576777,LOC107725412,LOC100334101 coding downstream 474939 29845625 ~ 29848380 (-)
LOC122357555 sh2d3a,LOC107685029,LOC107662707,LOC107560576 coding downstream 491171 29822257 ~ 29832148 (-)
trnar-ucg_101 NA coding upstream 33214 30358079 ~ 30358151 (-)
trnaq-uug_9 NA coding upstream 33530 30358395 ~ 30358466 (-)
trnar-ucg_102 NA coding upstream 34955 30359820 ~ 30359892 (-)
trnaq-uug_10 NA coding upstream 35741 30360606 ~ 30360678 (-)
trnar-ucg_103 NA coding upstream 36057 30360922 ~ 30360994 (-)
G7824 NA non-coding downstream 32282 30290710 ~ 30291037 (-)
G7822 NA non-coding downstream 38969 30283969 ~ 30284350 (-)
G7817 NA non-coding downstream 79995 30195990 ~ 30243324 (-)
G7813 NA non-coding downstream 145371 30169979 ~ 30177948 (-)
LOC122351882 NA non-coding downstream 200619 30122289 ~ 30122700 (-)
G7864 NA non-coding upstream 138458 30463323 ~ 30523613 (-)
G7866 NA non-coding upstream 234385 30559250 ~ 30559552 (-)
G7874 NA non-coding upstream 331591 30656456 ~ 30661467 (-)
G7988 NA non-coding upstream 518113 30842978 ~ 30843402 (-)
G7989 LOC107746637,LOC107691606 non-coding upstream 518852 30843717 ~ 30844170 (-)
G7816 NA other downstream 125471 30192201 ~ 30197848 (-)
G7648 LOC107662685,LOC107678949 other downstream 846981 29426098 ~ 29476338 (-)
G7655 LOC107662685 other downstream 847931 29452759 ~ 29475388 (-)
LOC122354733 LOC107678949,LOC107566822,LOC107713175,LOC107662686,LOC107758373,LOC107574162,LOC107662685 other downstream 889106 29411107 ~ 29434213 (-)
G7569 gtf3c1,LOC107678316 other downstream 1012721 29301807 ~ 29310598 (-)
G7868 NA other upstream 305369 30630234 ~ 30630505 (-)
G8009 NA other upstream 618633 30943498 ~ 30957486 (-)
G8091 abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823 other upstream 1207204 31532069 ~ 31537416 (-)
G8089 abca1a,LOC107571910,LOC107703854,LOC108413301 other upstream 1225321 31550186 ~ 31554035 (-)
LOC122349741 NA other upstream 1297809 31622674 ~ 31626684 (-)

Expression


Co-expression Network