knstrn (knstrn,LOC107723170,LOC107564216,LOC107758858,LOC107586895)


Basic Information

Item Value
gene id knstrn
gene name knstrn,LOC107723170,LOC107564216,LOC107758858,LOC107586895
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7311397 ~ 7314437 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247586.1
AACCACTGATCCGGATTTGCAAAGGAGGCGGAAGTGacgttatttattttgaaaattcatGGCGCTGAATTAAATCGGGACTTTTAAAACGTCTATCTACTGATCCGTTTTAGCTTGGTGTGAAAGCTGCATTCAGACATGAAAAGAGTTCAGATAAAAGACACGGGGATTCCTGCACAGCCCAGCCTGGCATCCAGAGCTGCACATGTCAAGAACGACACAGAAAACAAgAAAAACCAGTACAGATCTTTGAAAGTgccaTCTACAAGATATGGGCAACAGAATGATATAAGGGAGCAGAACAGAGTCCTGACTTCAACAAAAGAAGACCTGCAGAGACAGCTTGAGGAAATGAAGGGAACTGTGACTGGCCTGGAGCAGCGGTGCACAGACCTCCAAGAAGAAAATCGCGAAATACAAAAACAGCTGCGAGACTGTCATGTCCTCCTTGTTGCAGAAAGCCTTGACCCAgTTTCAGGGGAAAAGTTGGGCCAGACAGCTCAACAGAAGGAAGAACAAAGGAAAGAAGTTATGATGGTTTCTCAAAATCTGCTGACTGAGCTGAAACTGTTTGGCGAGACGGCACAAGATCACGAAGCGAATTTACTAGAAGTGCAGAACATCATGAGGGACCTGACGGAAGCACATGAAAAGCTCCAGCAGGAGAGGGCATTGTTCACTCTGGACGTGGAGGAAATGGAGAGAGCTTTGGGGGAGGCAGAGAGACTCTTGATggaataaatgaaagaaactcTTTCAGTGGCCATAAATACTGCAGCGCCATATGGTGTTGTTCGGAGATCTATCAGTCTGAGAACGAGAAGCATTCTGCAGAAGTGTAACATGCTGTTGCATTTAAAGGAACGTACAGCTCCTAACATTTTACgaaacacatttttaagaatGCTTTTGGTTTCAGAATGATTCCTGTTTTTGTCCACTTACAAGTCAAGGTATTATGAAAAATCTTCATGTACCTCTAGAACAGCAAGGCACTTCTTAAACGATGCttactgtatattgtttttatttgaattctttgTGCAAAGATGACcttaaacatgattaaatgttaaactGGCTTCAACAAGA
>XM_043247594.1
GGCGGAAGTGacgttatttattttgaaaattcatGGCGCTGAATTAAATCGGGACTTTTAAAACGTCTATCTACTGATCCGTTTTAGCTTGGTGTGTAATTGGTTGTGTCTACAGAAAGCTGCATTCAGACATGAAAAGAGTTCAGATAAAAGACACGGGGATTCCTGCACAGCCCAGCCTGGCATCCAGAGCTGCACATGTCAAGAACGACACAGAAAACAAgAAAAACCAGTACAGATCTTTGAAAGTgccaTCTACAAGATATGGGCAACAGAATGATATAAGGGAGCAGAACAGAGTCCTGACTTCAACAAAAGAAGACCTGCAGAGACAGCTTGAGGAAATGAAGGGAACTGTGACTGGCCTGGAGCAGCGGTGCACAGACCTCCAAGAAGAAAATCGCGAAATACAAAAACAGCTGCGAGACTGTCATGTCCTCCTTGTTGCAGAAAGCCTTGACCCAgTTTCAGGGGAAAAGTTGGGCCAGACAGCTCAACAGAAGGAAGAACAAAGGAAAGAAGTTATGATGGTTTCTCAAAATCTGCTGACTGAGCTGAAACTGTTTGGCGAGACGGCACAAGATCACGAAGCGAATTTACTAGAAGTGCAGAACATCATGAGGGACCTGACGGAAGCACATGAAAAGCTCCAGCAGGAGAGGGCATTGTTCACTCTGGACGTGGAGGAAATGGAGAGAGCTTTGGGGGAGGCAGAGAGACTCTTGATggaataaatgaaagaaactcTTTCAGTGGCCATAAATACTGCAGCGCCATATGGTGTTGTTCGGAGATCTATCAGTCTGAGAACGAGAAGCATTCTGCAGAAGTGTAACATGCTGTTGCATTTAAAGGAACGTACAGCTCCTAACATTTTACgaaacacatttttaagaatGCTTTTGGTTTCAGAATGATTCCTGTTTTTGTCCACTTACAAGTCAAGGTATTATGAAAAATCTTCATGTACCTCTAGAACAGCAAGGCACTTCTTAAACGATGCttactgtatattgtttttatttgaattctttgTGCAAAGATGACcttaaacatgattaaatgttaaactGGCTTCAACAAGA
>XM_043247603.1
GTGacgttatttattttgaaaattcatGGCGCTGAATTAAATCGGGACTTTTAAAACGTCTATCTACTGATCCGTTTTAGCTTGGTGTGCTGCATTCAGACATGAAAAGAGTTCAGATAAAAGACACGGGGATTCCTGCACAGCCCAGCCTGGCATCCAGAGCTGCACATGTCAAGAACGACACAGAAAACAAgAAAAACCAGTACAGATCTTTGAAAGTgccaTCTACAAGATATGGGCAACAGAATGATATAAGGGAGCAGAACAGAGTCCTGACTTCAACAAAAGAAGACCTGCAGAGACAGCTTGAGGAAATGAAGGGAACTGTGACTGGCCTGGAGCAGCGGTGCACAGACCTCCAAGAAGAAAATCGCGAAATACAAAAACAGCTGCGAGACTGTCATGTCCTCCTTGTTGCAGAAAGCCTTGACCCAgTTTCAGGGGAAAAGTTGGGCCAGACAGCTCAACAGAAGGAAGAACAAAGGAAAGAAGTTATGATGGTTTCTCAAAATCTGCTGACTGAGCTGAAACTGTTTGGCGAGACGGCACAAGATCACGAAGCGAATTTACTAGAAGTGCAGAACATCATGAGGGACCTGACGGAAGCACATGAAAAGCTCCAGCAGGAGAGGGCATTGTTCACTCTGGACGTGGAGGAAATGGAGAGAGCTTTGGGGGAGGCAGAGAGACTCTTGATggaataaatgaaagaaactcTTTCAGTGGCCATAAATACTGCAGCGCCATATGGTGTTGTTCGGAGATCTATCAGTCTGAGAACGAGAAGCATTCTGCAGAAGTGTAACATGCTGTTGCATTTAAAGGAACGTACAGCTCCTAACATTTTACgaaacacatttttaagaatGCTTTTGGTTTCAGAATGATTCCTGTTTTTGTCCACTTACAAGTCAAGGTATTATGAAAAATCTTCATGTACCTCTAGAACAGCAAGGCACTTCTTAAACGATGCttactgtatattgtttttatttgaattctttgTGCAAAGATGACcttaaacatgattaaatgttaaactGGCTTCAACAAGA

Function

symbol description
knstrn Predicted to be involved in mitotic sister chromatid segregation; regulation of attachment of spindle microtubules to kinetochore; and spindle organization. Predicted to act upstream of or within chromosome segregation. Predicted to be active in kinetochore and microtubule cytoskeleton. Human ortholog(s) of this gene implicated in actinic keratosis and skin squamous cell carcinoma. Orthologous to human KNSTRN (kinetochore localized astrin (SPAG5) binding protein).

NR:

description
tropomyosin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247586.1 True 1092 mRNA 0.43 8 7311397 7314437
XM_043247594.1 False 1085 mRNA 0.42 8 7311423 7314437
XM_043247603.1 False 1055 mRNA 0.42 8 7311430 7314437

Neighbor

gene id symbol gene type direction distance location
LOC122330119 LOC107723198,LOC107692626,LOC107564241,LOC100334711 coding upstream 126115 7181245 ~ 7185282 (+)
atp1b1b LOC107723190,LOC107692627,LOC107564268,LOC107665977,LOC107758877,LOC107586865 coding upstream 142050 7162308 ~ 7169347 (+)
dachb dachb,LOC107665972 coding upstream 249397 7029660 ~ 7062000 (+)
pip4p1b tmem55bb,LOC107723169,LOC107665981,LOC107590777,LOC107565103,LOC107721780 coding upstream 303543 7003467 ~ 7007854 (+)
zgc:77880 zgc:77880,LOC107692630,LOC107723165,LOC107758853,LOC107665980,LOC107590776,LOC108439367 coding upstream 308401 6998425 ~ 7002996 (+)
LOC122350276 eif3b,LOC107692621,LOC107758884,LOC105890332 coding downstream 225966 7540403 ~ 7547680 (+)
si:dkey-26i13.8 si:dkey-26i13.8,LOC107723167,LOC107564186,LOC107665939,LOC107557933,LOC107758843 coding downstream 233914 7548351 ~ 7559412 (+)
LOC122351150 LOC107692714,LOC107577730 coding downstream 246395 7560832 ~ 7562287 (+)
snx8b snx8b,LOC107692712,LOC107758890,LOC107565397,LOC107665942,LOC107723171 coding downstream 301558 7615995 ~ 7623816 (+)
tspan5b tspan5b,tsn5,LOC107692617,LOC107557938,LOC107758863,LOC108441323,LOC105893813,LOC103360687,LOC104950293 coding downstream 337285 7651722 ~ 7660532 (+)
G1577 LOC107723159,LOC107723172,LOC107565422,LOC107758837,LOC107590752,LOC107758876 non-coding upstream 167656 7135796 ~ 7143741 (+)
G1565 LOC107590778 non-coding upstream 243200 7065125 ~ 7068197 (+)
LOC122351804 lratb,LOC107665934,LOC107590749,LOC107758869,LOC107714130 non-coding upstream 394700 6912279 ~ 6916697 (+)
LOC122351810 NA non-coding upstream 399132 6911081 ~ 6912265 (+)
LOC122351800 lratb,LOC107714130,LOC107590749,LOC107665934,LOC107758869,LOC108258974 non-coding upstream 400322 6910376 ~ 6911075 (+)
LOC122336506 NA non-coding downstream 3765 7318202 ~ 7321769 (+)
LOC122330513 NA non-coding downstream 86694 7401131 ~ 7408205 (+)
G1677 NA non-coding downstream 199118 7513555 ~ 7582090 (+)
G1706 NA non-coding downstream 283830 7598267 ~ 7606500 (+)
G1697 NA non-coding downstream 310511 7624948 ~ 7628311 (+)
mpc2a LOC107564279,LOC107692629,LOC107665976,LOC108258922 other upstream 159177 7146873 ~ 7152220 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other upstream 451127 6846500 ~ 6860270 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other upstream 465849 6711635 ~ 6845548 (+)
rgs11 rgs11,LOC107692642,LOC107590769,LOC107722934,LOC107714145 other upstream 529256 6771486 ~ 6782141 (+)
G1414 NA other upstream 774440 6533502 ~ 6536957 (+)
spink4 LOC107758865,LOC107692710,LOC107723196,LOC107565379 other downstream 405828 7720265 ~ 7721425 (+)
pcdh10a pcdh10a,LOC107751533,LOC107557555,LOC107746446 other downstream 640274 7954711 ~ 7985615 (+)
cxcl8a LOC107714205,LOC107702289,LOC107562973,LOC107692705,LOC107565350 other downstream 1292388 8606825 ~ 8607785 (+)
ppp2r2ca ppp2r2ca,LOC107692591,LOC107563918,LOC107742501,LOC108241547,LOC106531115 other downstream 1308721 8623158 ~ 8634399 (+)
stim2a stim2a,LOC107742493,LOC107563819,LOC107656659,LOC107702263,LOC107714208,LOC107562986,LOC108441330 other downstream 1386003 8700440 ~ 8705873 (+)

Expression


Co-expression Network