atp5pf (atp5j,LOC107751073,LOC107593738,LOC107698902)


Basic Information

Item Value
gene id atp5pf
gene name atp5j,LOC107751073,LOC107593738,LOC107698902
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2220888 ~ 2223969 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247696.1
GGAGGGTGGCGCTCGTGACGTCACCAAGCGACCGCGAGTCATACCCATAAGCCCCCGCGGTGACCCGGAAGCGGTTGTTCGCCCGTCTGTCCGCGGCTCTGGTGTCAAACGCAAGatcatGGCTCTTCATCGGCTCAGGTGTGTGTCGTCTCTGCTCCGTTCGGTCGTGAGCGTGGCTCTACGCAGGAACATCGGTCTCTCCGCCGTCGTCTTCAACAAAGCTAAAGACCTGGACCCCGTGCAGAAGATGTTCCTGGACAAGATCCGCGAGTACAACAGCAAGAGCAGggcGGCTGGAGGAGTGGTGGACGCTGGGCCGTCGTATCAGAAGAACCTGAGTGAGGAGTTGACCAAACTCCAGCGCTTGTACGGAGGAGGAGACCTCACCAACTTCCCTCAGTTCAAGTTCCCAgAACCCAAACTAGAGGAGGTGACGACCAAATGAACAGCGTCCGTCCGTAACCCTGCTGGAAAGATGAGCTccatatttaataaacagtgttttctgtgtgaaccTGTGGCTCATGCCTTCACTTCCAGCCTGAGCTTCTTCAGATAAGAATATTCATGAACGTTTGTTTATTGTTCTGCTTTTCTGATTCTGGTcgttattacagtaataaagaTCTGATCACCGCTAAATTAGA

Function

symbol description
atp5j Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in several processes, including mitochondrial ATP synthesis coupled proton transport; negative regulation of icosanoid secretion; and positive regulation of heart rate. Predicted to act upstream of or within ion transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and sensory organ. Orthologous to human ATP5PF (ATP synthase peripheral stalk subunit F6).

NR:

description
ATP synthase-coupling factor 6, mitochondrial-like

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02131 ATPeF0F6, ATP5J; F-type H+-transporting ATPase subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247696.1 True 647 mRNA 0.53 4 2220888 2223969

Neighbor

gene id symbol gene type direction distance location
appa app,appa,LOC107698920,LOC107593741,LOC107751095,LOC103352860,LOC108232458 coding upstream 1152 2192921 ~ 2219736 (+)
adamts1 adamts1,LOC107698918,LOC107751074,LOC107593742 coding upstream 36387 2178211 ~ 2184501 (+)
LOC122350785 adamts5,LOC107751075,LOC107593743 coding upstream 49355 2153236 ~ 2171533 (+)
gart gart coding upstream 259245 1942061 ~ 1961643 (+)
LOC122345473 LOC107751076,LOC107593744,LOC107698914,LOC100332351 coding upstream 279267 1937450 ~ 1941621 (+)
LOC122351075 LOC107593736,LOC107698922,LOC107748323,LOC107665816,LOC107557261 coding downstream 29650 2253619 ~ 2260025 (+)
si:ch73-41e3.7 NA coding downstream 48009 2271978 ~ 2274222 (+)
trmt10c NA coding downstream 52477 2276446 ~ 2281686 (+)
ercc5 ercc5,LOC104958986 coding downstream 62170 2286139 ~ 2296701 (+)
mettl21e zgc:92518,LOC107748343,LOC107665805 coding downstream 73253 2297222 ~ 2300404 (+)
G415 NA non-coding upstream 45272 2174322 ~ 2175616 (+)
G408 NA non-coding upstream 101497 2119116 ~ 2119391 (+)
G404 NA non-coding upstream 139068 2081472 ~ 2081820 (+)
G320 NA non-coding upstream 269568 1936173 ~ 1951320 (+)
G319 NA non-coding upstream 287744 1931816 ~ 1933144 (+)
G450 NA non-coding downstream 51038 2275007 ~ 2275341 (+)
G439 NA non-coding downstream 52023 2275992 ~ 2276271 (+)
G457 NA non-coding downstream 99316 2323285 ~ 2327330 (+)
G440 NA non-coding downstream 148746 2372715 ~ 2373156 (+)
G463 NA non-coding downstream 196507 2420476 ~ 2421647 (+)
cyyr1 cyyr1,LOC107751099,LOC107698919,LOC107593871 other upstream 28424 2185821 ~ 2192464 (+)
LOC122327253 NA other upstream 779222 1439040 ~ 1441666 (+)
G136 kpnb3,ipo5,LOC107730386,LOC107677849,LOC107555240,LOC107653674 other upstream 1100167 1119719 ~ 1120721 (+)
LOC122341994 NA other upstream 1771248 445940 ~ 449640 (+)
G10 NA other upstream 2042688 177716 ~ 178200 (+)
grtp1a grtp1,grtp1a,LOC107571994 other downstream 259671 2483640 ~ 2489103 (+)
setdb2 LOC107570068 other downstream 269603 2493572 ~ 2558527 (+)
pcid2 pcid2 other downstream 287603 2511572 ~ 2518385 (+)
G474 f10,LOC107654567,LOC107694470,LOC107751061,LOC107747060 other downstream 300556 2524525 ~ 2527244 (+)
G482 dusp27 other downstream 370962 2594931 ~ 2596302 (+)

Expression


Co-expression Network