si:dkey-192k22.2


Basic Information

Item Value
gene id si:dkey-192k22.2
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11295411 ~ 11302485 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247726.1
CCTATGTAATGTGTTGTGTTAGTCACAAGGGAGAAACGCTAAAAAAGTCTGTGTGTTAAATACGTAGGATTATTTTAAGATAATAGTGGAATTGAAAAAGCCGAAGGACAGGTGTGAGATTGCGTGAGATTTCCAATGTGTGTTCAGCAAGTTCAAAGGTTAGGTGACCTTACAGAGGAGCTTCTTTTACCATGACAAGATCAAGTGCCTTCAAACTCGGCATCCTCTTCTTTCTCACTTTCATCTTGTGTCTACCAGAGTTTTTTCCAAAAATATCACAAATTGAGTTTCTCTGTGAGCCCTTTGACCCTTGCACACCTGAGAATGATGCACAGGTGTGTTCTCCATCCGACCCTCCATGTGCGACAGAAATGATAAATGCCAGCAGTCAACACACACATTCTGAAGGCTGGTATCTGTGTAAGACTGAAATGGATCTGCAGCTTCTCCACAACACAGTCCCTTCACAGTCAGAAGAGCATGTAATGGTGCAATTGGTTATGAAGGCAGGCAATCTCTCTGGATGGAATATTAGTGAGTTTGCGTTTCTCAACAACAGTGATCTATACACTGGACCCCAAAAGAGACTGTTCTACTGCTGCCTCCTACCCGACAACAGCAAATGTCCAGATCTGAACATATCcatgcaagaaaaaaacaccaGCTCTCCAACACAAGACACcgccattttaaaaaacactactTCTGCAAACCCAACTGCCTTTTCGCTCAAAACATCTACACTGTCTTTCCGAGCAACAGCTTCGACGGTTGAGCTGAAGTGTCAAACAACCAGCAGCAGTTTCCTCTTTTACTACCAGGAGAGCAATGAAACAGCAAGATCTGCCGCATTACCAGtgacccaaaaaagaaaagATGGCCGGTGGTGTGTGATTACTTCACTGTGGATGGCTCTGGTGCTGACTGTGCTTGTGGTAACCCTATTGAGTGTGTGCAACTTGATCTTTAAGAGCAGAAAACGAAAGTCCCATTTGATGCCGGTTTCAGCCCATGGACATCAGCCCAAAGTGCTcagtaaacaaaaagaaaattTGATGAGTGATGTCCCTGATGTGTCCATAGTAATGTGCAGCAATGATGGTTATGTTTTCTCTGGGAAATCTTCAGTGGGAAACAGAACAGAAGAAGACCTTCTGAAGGTGGCTGACCGCACATGCAAGAGAAATTTGCCGCCAATCTATGAGATTACAGAGACCTCACAAAATGAAGATGAGGAAGACGAGCAATGCAATGCCATGGTAACAAAGGAAGagtttaaaaaaacacatcagctTCAACATCTGGGAGCACAGGGCCACTGTGAAGCCCAGACTTACTTGCATCATCGAAGCAACTTTTCATGTATTGGTCATGAAGAAGATGGGGGGCTTTAACCCCTCAAATATAAGAGCAGATGCactttattaaatagaaaatgtatttatttacaacacGACAGAGGCCAGATAAGTTCATCGTGCCTTTCCCATAGTTAAACATACACTGCTCCAGAAAATTAACACAATGGATCAGTAAGGAATTATAGCATTTGTCTGTGGCCAGCACCTGCAACACCATTCCCTTTTTGAGGGTCGTCTTGTTGTTGCCGTTCCAGTGCACTTGTTGTCACTGCCATCAAAGCAGGAAAACTGATTCATAATCGCTTATGCTTCCTACCTGGAAAGATAAATATCCCtgatgtttaaacattttgcacACACCAAACTCATAAGTTTAAGAAGACTTCACTGCATTCATTCATCTTCCAGCTTTGCACTGCACAACATTATTGAAAGGCAGAAACTAAgagaataatttctaaaagtTGTTGtggtgttgtgtgtttgtgtgtgtttaaaagctGTGTAGGTTTCTTACAAAGACCTAAAACTGATAGTCTTAGTGTTATCAGGCAGGAATATGTATATAGTGTTATGTCACGCAGTCTCAACAAAATCGGTTTGGAACATTTCTATGACTGGGCCGAAAACCATTTCGCAAGCAGCACGGCAACACTAATGTGAtttcttaattatataataacagtCTTGTTTCGTGTTTCTATAATGCACCTTTTATCTTTACTTTACCTTAAAATGTACAGAGATTTGTAACTGGTACTGAGAACGGTGAGAAGTGGATATTTTACACAACagatgctgaataaaaacacacagtactGAGA

Function

GO:

id name namespace
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247726.1 True 2185 mRNA 0.41 12 11295411 11302485

Neighbor

gene id symbol gene type direction distance location
LOC122342742 adgrl3.1,LOC107709467,LOC107702411,LOC107671918,LOC108437730 coding upstream 152404 11123080 ~ 11143007 (+)
LOC122342727 chrnb3a,LOC107562617,LOC107709455,LOC107548357,LOC107655822,LOC107702298,LOC107750476 coding upstream 173536 11104137 ~ 11121875 (+)
LOC122347755 chrna6,LOC107655806,LOC107548359,LOC107709456,LOC107750436 coding upstream 218713 11062612 ~ 11076698 (+)
LOC122347879 msmo1,LOC107655978,LOC107745062,LOC107548349,LOC107750426,LOC107591587,LOC107702386 coding upstream 451066 10840428 ~ 10844345 (+)
LOC122347952 chrna7,LOC107748270,LOC107679711,LOC107702399,LOC107686877,LOC107548356,LOC107655813,LOC107709454,LOC107562618 coding upstream 560557 10723316 ~ 10734854 (+)
trnap-agg NA coding downstream 7908 11310393 ~ 11310464 (+)
slc25a51a slc25a51a,LOC107551570,LOC107754139,LOC107656936,LOC107746048,LOC107702292,LOC107591528 coding downstream 94147 11396632 ~ 11401250 (+)
rnf38 rnf38,LOC107656328,LOC107591527,LOC107754141,LOC107702356,LOC107551561 coding downstream 114592 11417077 ~ 11443465 (+)
limch1a LOC107754143,LOC107656319,LOC107591530,LOC107746015,LOC107702273,LOC107551594 coding downstream 144253 11446738 ~ 11489578 (+)
exosc9 exosc9,LOC107656918,LOC107746036,LOC107591532,LOC107702358 coding downstream 191804 11494289 ~ 11498109 (+)
G2420 mtnr1aa,LOC107656395,LOC107591561,LOC107702348,LOC107754134 non-coding upstream 93745 11201132 ~ 11201666 (+)
G2354 NA non-coding upstream 312444 10948119 ~ 10982967 (+)
G2352 NA non-coding upstream 456946 10837625 ~ 10838465 (+)
G2350 klhl2,LOC107591556,LOC107745059,LOC107702385,LOC107655955,LOC107750425,LOC107548347 non-coding upstream 458166 10827685 ~ 10837245 (+)
G2246 LOC107754123,LOC107562734,LOC107746042,LOC107702337,LOC107558191 non-coding upstream 921564 10372962 ~ 10373847 (+)
G2430 NA non-coding downstream 8108 11310593 ~ 11315354 (+)
G2449 NA non-coding downstream 36810 11339295 ~ 11341748 (+)
G2454 NA non-coding downstream 48415 11350900 ~ 11351657 (+)
G2468 NA non-coding downstream 80546 11383031 ~ 11383387 (+)
G2472 NA non-coding downstream 81312 11383797 ~ 11385013 (+)
LOC122347856 cpe,LOC107745061,LOC107548348,LOC107591555,LOC107702282,LOC107750458 other upstream 314055 10844956 ~ 10981356 (+)
tlr3 tlr3,LOC107754132,LOC107562740,LOC107656973,LOC107746023,LOC107702346 other upstream 805327 10483640 ~ 10490084 (+)
G2253 NA other upstream 897371 10397373 ~ 10398040 (+)
fat1a fat1,fat1a,LOC107656821,LOC107702333 other upstream 960209 10256662 ~ 10335202 (+)
G2230 NA other upstream 1049833 10245157 ~ 10245578 (+)
fbxo10 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107702368,LOC107754157,LOC107591540,LOC107750413 other downstream 409455 11711940 ~ 11724900 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other downstream 471471 11773956 ~ 11783070 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other downstream 535121 11837606 ~ 11844060 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other downstream 1342194 12644679 ~ 12658507 (+)
dnah6 dnah6,LOC106610484 other downstream 1356777 12659262 ~ 12724458 (+)

Expression


Co-expression Network