LOC122350995 (LOC107660492,LOC107757584,LOC107700259,LOC107548308)


Basic Information

Item Value
gene id LOC122350995
gene name LOC107660492,LOC107757584,LOC107700259,LOC107548308
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 30307963 ~ 30314051 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247807.1
ATGAAGATCGTATTTCTTGTGGTTcacattagcatgttgctacaTGTTGTTTTTTCTGCTCAGGGTCACTTTGCTAAAAAACTGCTGAATGACCTAATGGACGACTATTCTAATGCTTTACGGCCCGTGGAAGACACAGACAAAGCCCTTAACGTCACTCTACAGATCACACTCTCACAGATTAAAGATATGGATGAAAGGAACCAGGTGTTGACCACATACCTGTGGGTGCGTCAGATCTGGCATGATGCTTATCTGCACTGGGATAAAGATGAGTACGATGGACTTGAGGTCATTAGAATACCCAGCAATCTTATTTGGAGACCAGACATCGTTCTGTATAACAAtgcGGATGAGGAGGACTCTTCCGGACCCCCAGACACGAATGTGGTGTTGAGGTATAATGGTGAGATCACTTGGGACTCCCCTGCCATCACTAAGAGTTCCTGTAAGGTGGATGTCTCTTATTTCCCCTTTGATAGCCAGGAGTGCAACCTTACCTTTGGCTCCTGGACCTACAATGGCAACCAGGTGGATATCAGCATGGGCATGGAGAGTGGTGACCTTTCAGACTTTGTAGAAAATGTGGAATGGGAGTGTCACGGCATGCCAGCTGTTAAGAACGTCATAATATATGGCTGCTGCTCTGACCCATACCCTGATATAACGTACACAGTCCTGCTCAAGCGGCGTTCATCCTTCTACATCTTCAACCTTCTTCTGCCGTGTTTCCTCATCTCTTTCCTGGCTCCACTGGGCTTCTACCTGCCTGCTGATTCTGGGGAGAAGGTCTCACTTGGGGTGACAGTTCTGCTGGCTCTGACTGTATTTCAGTTGATGGTGGCCGAGAGTATGCCACCTTCAGAAAGTGTTCCCCTGATTGGAAAATACTACATTGCAACAATGACCATGATATTGGCCTCTACTTCATTGACTATCTTTATCATGAATATACACTTCTGTGGAGCAGAAGCCAAACCTGTGCCCCACTGGGCCAAAGTCCTGATAATAGACTACATGTCGAAGATCTTCTTTGTGTATGAGGTAGGGGAGAACTGTACAACACCTGAAAGTGACCGAGGCACATTATTCTCGGAAGACCCACTGGCTAGCCTTGAGAGAGATGGGTATTTTGACAAAGGGTTTTATGGCGACCATGATGACAGAAACCGCAATCAGTTTAATGGGTACAATCACAGAGACCACCGGCATGGGAATGGGTACCATCACAACAGCAGAGACTATCGACAACAGAGGCATAACCAGCAAAGAAGGACACGCTCGTCTTCCAACTCGCCTATTCGACAGAATGCCCATCAtccaaaatacacacattacattGGCCGAGATGGAAGTGAAAAGCTTCCATTGACAAGCCAGGAGAAACTCAAAGACAGCGAACTCTCCATTCCAGAAAAACTTACTGGATACACCTACGATCATGGCAATGGTTATCTAAATGGAGTTGGGTATCTCCACGATAATAGCTACAGCAAAACCTTTGGAGCAGATAGTTATAATAAGCCCACCACTGGCAAAGgatgtgtatgtgtctgtggcCAACATCAGAAAGTGGTGCGAAACATTGAGTACATAGCTAACTGTTTCAGAGAGCAGAGGGCACACCAGGCCAAAGGGGCTGAGTGGAAGAAGGTTGCCAAGGTGATGGACAGGTTCTTCATGTGGGTGTTTTTCATCATGGTCTTCCTCATGAGTATCCTTGTCATGGCCAAGGCAACCTAGACCGTTTACACCATAAAGATGTAATCAACTGATATTTCATATTGGCTAACACTATGTGTCAAAAGACCAGTTAGTTACTGataaatttttttcatcttgTATTTGTTGGCAAATGCGCTAATGTTCTACATTCAACTTAATATGTGGGTTACTGCAAGAGAATTAGTTGTTTGAATGtctcattttctttattgttgGTTTCATTCTTTACATTCAAGAAGATTCTCTGGTTGTAACAGTTAAAGaaacagcattaatattttaggtGTAGACGTGTTCCCACATGTGTATATAGAGTAACACAATCTTTGTCTGGCATGGacaaacattaataatgcaCAGTTAACCCTGCACATGCGCATTGACAGACATCCACactaatgcacattaaaaatgcataaatagatCAGTCTTGAATGTtgatcacacacacagtgtaaaaCTTGCA

Function

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-9-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0044425 obsolete membrane part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05312 CHRNN; nicotinic acetylcholine receptor, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247807.1 True 2191 mRNA 0.44 7 30307963 30314051

Neighbor

gene id symbol gene type direction distance location
LOC122351861 primpol,LOC107656685,LOC107702393,LOC107750460 coding downstream 142613 30155709 ~ 30165350 (-)
LOC122349594 si:ch211-15j1.5,LOC107574374,LOC107576777,LOC107725412,LOC100334101 coding downstream 459583 29845625 ~ 29848380 (-)
LOC122357555 sh2d3a,LOC107685029,LOC107662707,LOC107560576 coding downstream 475815 29822257 ~ 29832148 (-)
LOC122324036 LOC107571898,LOC107659785,LOC107659779,LOC107576778,LOC107571412,LOC107574527,LOC107675009 coding downstream 496444 29809374 ~ 29811519 (-)
LOC122363120 LOC107722580 coding downstream 499380 29806587 ~ 29808583 (-)
LOC122350179 rhoh,LOC107548321,LOC107598269,LOC107757583 coding upstream 5030 30319081 ~ 30321983 (-)
LOC122350704 n4bp2,LOC107700258,LOC107598270,LOC107757609,LOC107598268 coding upstream 9268 30323319 ~ 30324865 (-)
trnar-ucg_101 NA coding upstream 44028 30358079 ~ 30358151 (-)
trnaq-uug_9 NA coding upstream 44344 30358395 ~ 30358466 (-)
trnar-ucg_102 NA coding upstream 45769 30359820 ~ 30359892 (-)
G7824 NA non-coding downstream 16926 30290710 ~ 30291037 (-)
G7822 NA non-coding downstream 23613 30283969 ~ 30284350 (-)
G7817 NA non-coding downstream 64639 30195990 ~ 30243324 (-)
G7806 NA non-coding downstream 123354 30107735 ~ 30184609 (-)
G7813 NA non-coding downstream 130015 30169979 ~ 30177948 (-)
G7864 NA non-coding upstream 149272 30463323 ~ 30523613 (-)
G7866 NA non-coding upstream 245199 30559250 ~ 30559552 (-)
G7874 NA non-coding upstream 342405 30656456 ~ 30661467 (-)
G7988 NA non-coding upstream 528927 30842978 ~ 30843402 (-)
G7989 LOC107746637,LOC107691606 non-coding upstream 529666 30843717 ~ 30844170 (-)
G7816 NA other downstream 110115 30192201 ~ 30197848 (-)
G7648 LOC107662685,LOC107678949 other downstream 831625 29426098 ~ 29476338 (-)
G7655 LOC107662685 other downstream 832575 29452759 ~ 29475388 (-)
LOC122354733 LOC107678949,LOC107566822,LOC107713175,LOC107662686,LOC107758373,LOC107574162,LOC107662685 other downstream 873750 29411107 ~ 29434213 (-)
G7569 gtf3c1,LOC107678316 other downstream 997365 29301807 ~ 29310598 (-)
G7868 NA other upstream 316183 30630234 ~ 30630505 (-)
G8009 NA other upstream 629447 30943498 ~ 30957486 (-)
G8091 abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823 other upstream 1218018 31532069 ~ 31537416 (-)
G8089 abca1a,LOC107571910,LOC107703854,LOC108413301 other upstream 1236135 31550186 ~ 31554035 (-)
LOC122349741 NA other upstream 1308623 31622674 ~ 31626684 (-)

Expression


Co-expression Network