pgam1b (pgam1b,pgam1a,pgam1,LOC107700858,LOC107598490,LOC107703810,LOC108258456)


Basic Information

Item Value
gene id pgam1b
gene name pgam1b,pgam1a,pgam1,LOC107700858,LOC107598490,LOC107703810,LOC108258456
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26718192 ~ 26721829 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247910.1
GCCGCGCGCGTCAGGAAGCGTCGTGTTCTCGCGCGGTCCGCCTTTAAGAAGCGACGACCTCCAAACGCGCCGGAGCGATATTTCCGTTCACCGTGCCAGCGTCTCTCATCCGCCTCCCGGGGCCGCGTCTCCTCCGTTACCCGCGAACACCCCCGCCGCGTCTCCGAGCGCTCGCGTGCAGACCGCGCGTCATGGCCGCCTATAAGCTGGTGCTGATCCGCCACGGAGAGAGCTGCTGGAACCAGGAGAACCGCTTCTGCGGCTGGTTCGACGCCGACCTGAGCGAAACCGGAGCCGAGGAGGCCAAGAGGGGCGGCCAGGCTCTGAAAGATGCAGGTTATGAGTTTGACGTCTGCTACACGTCTGTGCTGAAGCGTGCCATCAGGACCCTGTGGCTGGTGCTGGACGGCATCGATCAGATGTGGCTACCCGTGCATCGCACCTGGCGTCTGAACGAGCGTCACTACGGCGGCCTGACGGGCCTCAACAAGGCCGAGACGGCGGCCAAACACGGCGAGGCGCAGGTGAAGATCTGGAGGCGCTCCTACGACATCCCTCCGCCGCCCATGGACCCCGAGCACGACTTCTACACCGCCATCAGCAAGGACCGTCGCTACGGCGACCTGACGGAGGACCAGCTGCCCTCGTGCGAGAGCCTGAAGGACACCATCGCTCGAGCGCTGCCCTTCTGGAACGAGGAAATCGTTCCTCAGATCAAGGAGGGCAAGAGGGTCCTCATCGCTGCTCACGGGAACAGCCTGCGAGGAATCGTCAAACACCTGGAGGGTATGTCAGAGGAGGCGATCATGGAGCTGAACCTGCCCACAGGAATCCCCATCCTCTATGAGCTGGACAAGAACCTGAAGCCCGTCAAGCCCATGCAGTTCCTGGGCGACGAAGAGACGGTCCGCAAAGCCATGGAGGCCGTCGCCGCTCAGGGCAAAGCCAAGAAGTAGACCATGAGCCCAGAACCGAACCGCTGACCGATCCAATCATTCATTTCCTACTTCCCTGAATCCGGACCACCCTTATAATAAGATATAACTGAGCCACAGGGAGGGATTTTAGCTTTACGTAGTCTCTGCACTGAAGATGGCACACGTGTTTGTCTGCGACGGCATGCTTTGGCGACTGTTGCCAGGCAACGGCATATATTAATGACCGGGTGGGCAGCAGAAGTGGTACGATTCCCCGTCTTTGCGTGATTCATGCTTCGCGCCGCCGCTCTAGATCTCTGAACACCCACACAAACGCTCTCGATTCATCCCACACTTTGAAGTCACTGAAAAGATCTGCGTAGAGGTTTGTTTTTAGGATTCACCTACGTCTGGAGCGGAGACGTGATTAAAAGCAGATTACATTCCTGTGGGCTTTTTGCATACGtttatggtcattttttttccctcactttTTCTGTGGTAAATGTCACTGTATGTTGATGTCGTACTGTAGTCCATGTCTTGTTCGGTGCAGTTTGACCCAagtattctttaaaaacatttaaggaAATATTGAACATTGCTGTCCCAGAAAATACattattgcatttctttttttctgtgcttgTACAGCAGACGTTAAAGTTATTTTGCTTGACTGAAAGAAAGAGCTATATGTACACTTAAGTGTGATATGAGATGTGCAATCCTTAATAAATGTCGGCTTAATTAAGCAGAAAAA

Function

symbol description
pgam1b Predicted to enable bisphosphoglycerate mutase activity; hydrolase activity; and phosphoglycerate mutase activity. Predicted to act upstream of or within glycolytic process. Is expressed in liver. Orthologous to several human genes including PGAM1 (phosphoglycerate mutase 1).
pgam1a Predicted to enable bisphosphoglycerate mutase activity; hydrolase activity; and phosphoglycerate mutase activity. Predicted to act upstream of or within glycolytic process. Orthologous to several human genes including PGAM1 (phosphoglycerate mutase 1).
pgam1 Enables phosphoglycerate mutase activity and protein kinase binding activity. Involved in glycolytic process; regulation of generation of precursor metabolites and energy; and respiratory burst. Located in cytosol.

NR:

description
phosphoglycerate mutase 1

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0004619 phosphoglycerate mutase activity molecular_function

KEGG:

id description
K01834 PGAM, gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247910.1 True 1680 mRNA 0.55 4 26718192 26721829

Neighbor

gene id symbol gene type direction distance location
exosc1 exosc1,LOC107700859,LOC107598491 coding downstream 491 26712846 ~ 26717701 (-)
tekt4 tekt4,LOC107729531,LOC107598552,LOC107709630 coding downstream 33719 26680051 ~ 26684473 (-)
wu:fj19g03 NA coding downstream 74948 26639184 ~ 26643244 (-)
pkd1a pkd1,LOC107729871,LOC107700794,LOC107598528 coding downstream 111940 26526890 ~ 26606252 (-)
nthl1 nthl1 coding downstream 236629 26476652 ~ 26481563 (-)
cdc25d LOC107598551,LOC107700789,LOC107729831 coding upstream 690 26722519 ~ 26727432 (-)
avpi1 LOC107730030,LOC107700857,LOC107598489,LOC107703811 coding upstream 12643 26734472 ~ 26739040 (-)
crtac1a crtac1a,LOC107700849,LOC107598482,LOC107747162 coding upstream 45457 26767286 ~ 26773820 (-)
LOC122350383 khsrp,LOC107703803,LOC107594262,LOC107700847,LOC107598477 coding upstream 56638 26778467 ~ 26786900 (-)
slc25a23a slc25a23a,LOC107747161,LOC107594260,LOC107703801 coding upstream 65479 26787308 ~ 26798014 (-)
G6827 gprc5b,gprc5bb,LOC107729503,LOC107578286,LOC107700862,LOC107598492,LOC107709629,LOC107703814 non-coding downstream 11364 26653242 ~ 26706828 (-)
G6834 NA non-coding downstream 27702 26689354 ~ 26690490 (-)
G6801 NA non-coding downstream 204272 26513569 ~ 26513920 (-)
G6799 NA non-coding downstream 205234 26512392 ~ 26512958 (-)
G6769 NA non-coding downstream 271454 26444897 ~ 26446738 (-)
G6873 NA non-coding upstream 26894 26748723 ~ 26748956 (-)
G6874 NA non-coding upstream 32903 26754732 ~ 26758292 (-)
G6870 NA non-coding upstream 38175 26760004 ~ 26764480 (-)
G6856 LOC107736226,LOC107598471,LOC107700840 non-coding upstream 88119 26809948 ~ 26865737 (-)
G6887 NA non-coding upstream 211303 26933132 ~ 26942207 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 194790 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 300295 26416859 ~ 26417897 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other downstream 582706 26130788 ~ 26135486 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other downstream 854405 25831324 ~ 25863787 (-)
LOC122353196 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 1002488 25714102 ~ 25715704 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other upstream 80081 26801910 ~ 26802954 (-)
si:ch211-286b5.5 NA other upstream 195840 26917669 ~ 26920034 (-)
LOC122349164 NA other upstream 262715 26984544 ~ 26992582 (-)
LOC122344379 NA other upstream 474409 27196238 ~ 27202628 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 518495 27240324 ~ 27255067 (-)

Expression


Co-expression Network