XLOC_006587 (rufy2)


Basic Information

Item Value
gene id XLOC_006587
gene name rufy2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22876467 ~ 22907260 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012726
GGGGCGTTGACAAGAAGCATCACAAGGGAAAGCGCTCGAGCTGCAGCCGTCCAGCGTTTATCAATGCCGCTCAACACATCACCGCCCTGGCTGTTAGGTGAAGCGTTACCCTAAACAGTGTGAGATTCACTTTCACGATGGCGACACCTGCAGAACAGGACCTTGTGTTGGCGGAAGCAGAGGGCAACAAAGAGAGAACGCAAGTGTTCGGGATCCTCAGATTGCAGGAGGATAAATCGGCCGGCGAGAAAGCGAGCAGCCCTGCCATGAAATCTGGAGACGGGAGATGGCAGGCGCCCATATTCGCGCTAGCCAGAAAGGCTTCAGAAACCTTCTCTGGTGGCATTCATGTGCTTCCCAAAGTTACAGAGCCTAAAACGTCGCCTTTTACCGAAGAATGGGGTGCCAGGGCCTTTCGGGATCCCATGGCAATGGAGCGAGCTAACTTGCTCAATATGGCTAAGCTTAGCATCAAAGGCCTGATCGAGTCAGCTCTGAGCTTCGGACGAACTCTGGACTCTGACTATCCGCCTCTGCAACAGTTCTTTGTTGTCATGGAGCACTGCCTGAAACATGGCCTCAAGGTGAAGAAATCGTTTCTTGGTTACAACAAGTCATTGTGGGGGCCTCTGGAGATGGTGGAGAAGCTTTGCCCAGAAGCAGGAGAAATCGCAGCCAGTGTACGAGATCTTCCTGGCCTGAAGACTCCTCTGGGCAGAGCCAGAGCGTGGTTGAGACTGGCACTGATGCAGAAGAAATTAGCTGATTACCTTCGCCTCCTCATCACCAGGAAAGACATTCTTAGTGAGTTTTATGAGAGCTCAGCGGTGATGCTGGAGGAGGAAGGCGCTGTCATTGTTGGGCTCCTGGTGGGACTGAACGTCATTGATGCAAACTTGTGTGTGAAGGGTGAAGACCTCGATACGCAAGTTGGTGTAATAGACTTCTCCATGTACTTGAAGAATGACATTGATGACTACAGAAGTGAAGAAAGgaATGGACAGATTGCAGCTATTTTGGATCAGAAGAACTATGTTGAAGAATTAAATAGGCAGCTGAAttCTACAGTGCAAGGCCTGCAGGGGCGCGTGGAGTCATTAGAAAAAACCAACTCCAAACTCATAGAAGAGttggcAATAGCGAAAAACAACATAATCAAGCTGCAGGAAGAAAACCACCAACTCAGAACCGAAAATTCTGTCATTCTAATGAAAGCACAACAACGTCTTGCGGTTACAGAAGGAGATTTGAGCTGTGAGTTGGACACGTACAAGCAGTCAAGGCAGGGCCTGGATGAAATGTACAACGAGGCTAGACGCCAACTAAAAGAGGAATGTCAGCTCCGGCagGATGTGGAGAATGAGCTGGTTGTGCAGGTGAGCATGAAGCAGGAGATGGAGATGGCCATGAAACTGCTAGAAAAGGACATCCATGAAAAACAGGACACTCTGATTGGACTCCGGCACCAGTTAGATGAAGTAAAAGCCATCAATGTGGAGATGTACCAAAAAATGCAGTCTTCAGACGACAGCATGAGACAGAAGAATGACATGATCGCACGGTTGGAGGAGAAGACCAATCAAATTACGGCAACTATGAAACAACTAGAGCAAAGATTGCAGGATGCCGAGAGGGAACGGGCCAGTGCCGAAGACGGGGTGCGCAAATTCAAGCAGGACTTCACAAACAAAGCCGAAAGTCTCCAAAAGCAGATAGTCCAGAGAGAGAAGCAGATGACGCAGCTGGAAACAGACTTGAAAATCGAGAGGGATTGGCGGCAGACGTTACAGAATGAACTGGAGAGAGAACGAGAGACAATCACCCAACTAGCTGCTGAAGCTCAGCAAATCAACGGACTCAAAAAAGAGTTTCACAGGCTGCAGGATGAGAACACACTGCTGAAGGGGATTTGTGAAGAGCAGGAACATGCGCTGGAGGAACTGGGCTGCAAATTAAGCGAGTCAAAGTTGAAAATCGAAGATATAAAAGAAGCCAACAAGGCACTTCAGGGTGGACAGGTCTGGCTGAAGGACAAAGACGCTACACATTGCAAGCTTTGCGAGAAGGAATTTTCAATCTCCAGAAGAAAGCACCACTGCAGGAACTGTGGCGAGATCTTCTGTAACGCCTGTTCAGATAATGAGCTGCCGCTTCCCGCTTCTCCCAAACCCGTGAGAGTCTGCGACACATGCCACGCTATGCTCCTCCAGCGCTGCTCCTCCAACACCACATAAAACACGACGCTAACAAGTCCCAAAGTGGCCAAAATGGAGTTTACATTTCAGATGGGGGGAAAAAAAGCTTGTTGCTTCCGGTGCAGATGGCCAATGCGATGTTCGTCAGCGAGCGCGCAACGAGTTTACAAATGGATTAATGACTCTTAACGCCTCCGTCTGGGGTGCAAGTCGACCGATTTCAGGTTTTATATTAGCACAACACTCCCATGCATTTTTGATATATGAAGGGTGAACCGGTTTCATTCCTTGTCAGTCAGAAGTCAATTCAGTTACTCGTTTCTTAAGCAACTGTATTTCTGATTCAGTTCATTCATGTGTGCCTGCATAACAAGCCAAACTGACAAGAGATTTGACATCATTCCAGATGTTTGTATATGTACGGCAGAAGAGAAAATGTTGTCAGTGCTGCTCATGAATGATTGAGGTTGATTCTCGTCAAATAGCACAGAAACGTTGTTGTGAATACGATGTTCAGGTTTCTTGTCTGCAGTATGGTATTATTTCACAACTGCAGATTTACTTTGGTACAGAACTGGAACACTACTCACTTTGAGCATTTGTGTTGACTTTTGTCTGAATAATTGTTCATAATGCAGCTGTTAACTTAAATGTGAAGTTTATGAAACTGTACATATGCCTTACACAACTAAAGTTGACTATAATTC
>TCONS_00012727
GCTCCACTAACAGACATTGGTCAGATCTCTACACCCAGAAGTACCAGAACAACACCAGCACAGGGTGTGGGTTTAACTGGGGGTTCATTCATTTAGACCCTGAAGGGGGTTTTGGAGTGGCAGTCATGTATTCCCCTCAGAGTCTTCACCGATGGGGCATCACACATAGTGAAAGTATGGAGCGTTTGGCCTACAGTCAAGCCTTTCGGGATCCCATGGCAATGGAGCGAGCTAACTTGCTCAATATGGCTAAGCTTAGCATCAAAGGCCTGATCGAGTCAGCTCTGAGCTTCGGACGAACTCTGGACTCTGACTATCCGCCTCTGCAACAGTTCTTTGTTGTCATGGAGCACTGCCTGAAACATGGCCTCAAGGTGAAGAAATCGTTTCTTGGTTACAACAAGTCATTGTGGGGGCCTCTGGAGATGGTGGAGAAGCTTTGCCCAGAAGCAGGAGAAATCGCAGCCAGTGTACGAGATCTTCCTGGCCTGAAGACTCCTCTGGGCAGAGCCAGAGCGTGGTTGAGACTGGCACTGATGCAGAAGAAATTAGCTGATTACCTTCGCCTCCTCATCACCAGGAAAGACATTCTTAGTGAGTTTTATGAGAGCTCAGCGGTGATGCTGGAGGAGGAAGGCGCTGTCATTGTTGGGCTCCTGGTGGGACTGAACGTCATTGATGCAAACTTGTGTGTGAAGGGTGAAGACCTCGATACGCAAGTTGGTGTAATAGACTTCTCCATGTACTTGAAGAATGACATTGATGACTACAGAAGTGAAGAAAGgaATGGACAGATTGCAGCTATTTTGGATCAGAAGAACTATGTTGAAGAATTAAATAGGCAGCTGAAttCTACAGTGCAAGGCCTGCAGGGGCGCGTGGAGTCATTAGAAAAAACCAACTCCAAACTCATAGAAGAGttggcAATAGCGAAAAACAACATAATCAAGCTGCAGGAAGAAAACCACCAACTCAGAACCGAAAATTCTGTCATTCTAATGAAAGCACAACAACGTCTTGCGGTTACAGAAGGAGATTTGAGCTGTGAGTTGGACACGTACAAGCAGTCAAGGCAGGGCCTGGATGAAATGTACAACGAGGCTAGACGCCAACTAAAAGAGGAATGTCAGCTCCGGCagGATGTGGAGAATGAGCTGGTTGTGCAGGTGAGCATGAAGCAGGAGATGGAGATGGCCATGAAACTGCTAGAAAAGGACATCCATGAAAAACAGGACACTCTGATTGGACTCCGGCACCAGTTAGATGAAGTAAAAGCCATCAATGTGGAGATGTACCAAAAAATGCAGTCTTCAGACGACAGCATGAGACAGAAGAATGACATGATCGCACGGTTGGAGGAGAAGACCAATCAAATTACGGCAACTATGAAACAACTAGAGCAAAGATTGCAGGATGCCGAGAGGGAACGGGCCAGTGCCGAAGACGGGGTGCGCAAATTCAAGCAGGACTTCACAAACAAAGCCGAAAGTCTCCAAAAGCAGATAGTCCAGAGAGAGAAGCAGATGACGCAGCTGGAAACAGACTTGAAAATCGAGAGGGATTGGCGGCAGACGTTACAGAATGAACTGGAGAGAGAACGAGAGACAATCACCCAACTAGCTGCTGAAGCTCAGCAAATCAACGGACTCAAAAAAGAGTTTCACAGGCTGCAGGATGAGAACACACTGCTGAAGGGGATTTGTGAAGAGCAGGAACATGCGCTGGAGGAACTGGGCTGCAAATTAAGCGAGTCAAAGTTGAAAATCGAAGATATAAAAGAAGCCAACAAGGCACTTCAGGGTGGACAGGTCTGGCTGAAGGACAAAGACGCTACACATTGCAAGCTTTGCGAGAAGGAATTTTCAATCTCCAGAAGAAAGCACCACTGCAGGAACTGTGGCGAGATCTTCTGTAACGCCTGTTCAGATAATGAGCTGCCGCTTCCCGCTTCTCCCAAACCCGTGAGAGTCTGCGACACATGCCACGCTATGCTCCTCCAGCGCTGCTCCTCCAACACCACATAAAACACGACGCTAACAAGTCCCAAAGTGGCCAAAATGGAGTTTACATTTCAGATGGGGGGAAAAAAAGCTTGTTGCTTCCGGTGCAGATGGCCAATGCGATGTTCGTCAGCGAGCGCGCAACGAGTTTACAAATGGATTAATGACTCTTAACGCCTCCGTCTGGGGTGCAAGTCGACCGATTTCAGGTTTTATATTAGCACAACACTCCCATGCATTTTTGATATATGAAGGGTGAACCGGTTTCATTCCTTGTCAGTCAGAAGTCAATTCAGTTACTCGTTTCTTAAGCAACTGTATTTCTGATTCAGTTCATTCATGTGTGCCTGCATAACAAGCCAAACTGACAAGAGATTTGACATCATTCCAGATGTTTGTATATGTACGGCAGAAGAGAAAATGTTGTCAGTGCTGCTCATGAATGATTGAGGTTGATTCTCGTCAAATAGCACAGAAACGTTGTTGTGAATACGATGTTCAGGTTTCTTGTCTGCAGTATGGTATTATTTCACAACTGCAGATTTACTTTGGTACAGAACTGGAACACTACTCACTTTGAGCATTTGTGTTGACTTTTGTCTGAATAATTGTTCATAATGCAGCTGTTAACTTAAATGTGAAGTTTATGAAACTGTACATATGCCTTACACAACTAAAGTTGACTATAATTC

Function

symbol description
rufy2 Predicted to enable metal ion binding activity. Predicted to be active in cytoplasm. Orthologous to human RUFY2 (RUN and FYVE domain containing 2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-66 Predicted to enable metal ion binding activity. Predicted to be active in cytoplasm. Orthologous to human RUFY2 (RUN and FYVE domain containing 2).

Ensembl:

ensembl_id ENSDARG00000062019

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012726 False 2902 mRNA 0.47 18 22876467 22903246
TCONS_00012727 True 2692 mRNA 0.46 19 22876467 22907260

Neighbor

gene id symbol gene type direction distance location
XLOC_006586 pbld2 coding downstream 14334 22849796 ~ 22862133 (-)
XLOC_006585 BX530068.1 coding downstream 28983 22843830 ~ 22847484 (-)
XLOC_006584 pbld coding downstream 32662 22839821 ~ 22843805 (-)
XLOC_006583 si:ch211-1n9.6 coding downstream 56800 22819485 ~ 22819667 (-)
XLOC_006582 CR550304.1 coding downstream 92034 22778060 ~ 22784433 (-)
XLOC_006588 tspan15 coding upstream 16764 22924024 ~ 22961610 (-)
XLOC_006589 hk1 coding upstream 65628 22972888 ~ 23007813 (-)
XLOC_006590 hkdc1 coding upstream 110238 23017498 ~ 23031803 (-)
XLOC_006591 supv3l1 coding upstream 130325 23037585 ~ 23051766 (-)
XLOC_006592 vps26a coding upstream 151008 23058268 ~ 23067381 (-)
XLOC_006471 BX537274.2 misc downstream 12611562 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 22050242 825904 ~ 826225 (-)
XLOC_006578 BX649385.1 non-coding downstream 681299 22191361 ~ 22195168 (-)
XLOC_006577 NA non-coding downstream 936502 21925701 ~ 21939965 (-)
XLOC_006570 NA non-coding downstream 1729085 21146114 ~ 21147382 (-)
XLOC_006595 NA non-coding upstream 305499 23212759 ~ 23217818 (-)
XLOC_006597 NA non-coding upstream 500769 23408029 ~ 23411631 (-)
XLOC_006602 AL772289.1 non-coding upstream 1054032 23961292 ~ 23961406 (-)
XLOC_006605 CR762497.2 non-coding upstream 1219803 24127063 ~ 24127179 (-)
XLOC_006607 CR762497.1 non-coding upstream 1376410 24283670 ~ 24286390 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_13498541_13510228 RUFY2 coding CI01000012 null 13498541 ~ 13510265 (+)
bowfin (Amia calva) AMCG00003091 rufy2,LOC107725492,LOC107743555 coding CM030139.1 CM030139.1 11118965 ~ 11139826 (+)