dtx4b (dtx4,LOC107676128,LOC107551788,LOC107692161,LOC107746726,LOC107603012)


Basic Information

Item Value
gene id dtx4b
gene name dtx4,LOC107676128,LOC107551788,LOC107692161,LOC107746726,LOC107603012
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21866992 ~ 21882353 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248080.1
GAATCGGACTTTCCAGCACGAGTTGGGCATTTTACTCACGCTGCTGTGTATCGCTGGGGAGGTGTTGGGTGTCACTTCTTCAAACTCAGTTCGCTTCACACAAAGCCGCGAGCGGTTTACCAGAGCTCGTTTACTCGGAACTCTACATGATTTTCGATAACTCGCACCTCGTGGCGCAAGGAAGTATTAAGAAGGAGAAGACGCAGAAACCGAGGAACGGTCAACGCCGAATGAGTAAAACAAGGAAGAAGAATATCGGTCCGTTGACTGTTTGTTGACACTCGTGAGGAGTTGTCGGGATCTCCCGAGCCCAGCCATGGAAGAAGTGAGACGGAGATTTCTTTCCTGACGCTGCGGTCTTCAAAAATGGACACGATGTCGCTGGCCTCCGCCGCGGTCGTGTGGGAATGGCTCAACGAGCACGGGCGCTGGCGGCCGTACAGCCCGGCCGTGTCTCACCACATAGAGGCGGTGATAAGAAGCGATCCCCGCGGCGGCAGTGTCGTGTTAGGCCGAGCTGACAGCCGCCTATCGCCCTACATCATCGATCTGCACTCCATGCATCAGTTCAGACAGGATACCGGTACGTTAAGACCAGTGCGACGCAGTTTCTATGACCCCACCTCAGCCCCAGGCCAAGGTTGGATATGGGAGTGGGAAAATGACGCAGGTTCCTGGACAACCTATGACATGGAGGTGATCATTGCCTTGCAAGCGGCATGGGACCGACAGCAACCCTGGCTAGACCTGACATCGATCGGCTTTTGCTACTTCGTGGACTTCCAGACCATGACCCAGATTAACAGACAAACGCAGCGGCAGCGGCGCATCCAGAGGCGCTCAGACATGGTTTACCCACTAGTCTCTGGGTCGCTGCCTAAAACCTCACAGGCTTGGGGTACAGGCTCAGGGTCTGGAGGCATTGCTAAGGGACTAGCATCAGGTGGGGGCTCGACCGGGGCACTTCTCGGGGTAGGTGTATCTGGATCTACCTTGAGTAGAAAAGGAAGTTCTGTTTACCCAAATGGGGCGCTTTCGGTATCATCTCTCGCTCCTCCTGGACAGCCATGTGCCTGCCAGCAGTGCATTCTGGTGTTGAGTGTTAAGGCAAATGGCACCTCAACACAGACACTGGGACGTGCAACAAAGCCAAACAGTCCTAAATCCAATTTTGGGACACTTCCATCCTCCTCTGCTTCCATGTCTGTTTTAAACTCTTATTCTCATACACTACCGCATGGCACGTCTTTAAAGTGCTCGCAAACGGAAGAAGCCAAGAAATCTGCTTTTGAACAGTCATTGTCTCTTCTCACATCGGACACTGCCAATCTCTCAGTCTCCTCCAGCCGTCCGACACCTCCCACTCTGCCATCGCCGAATAAGCAGCCTTCATCCGCCCCAAGCTCTTCGTCTTCTGCAACATTTGTGCCAACTGCCATGCTCATTAATACATCAACCGGTCCCTCATCATCCACAGATTTGACATCATCTTCAACATCGTTGCCTTCTCAACGCTCTGCCGCCTGTGCTGCCCCTCTGCCAACTCGTGCCAGTCTGACAGGGCTTAGTCGGCCTGCTTTGCAGAAAATTGCCATGGCACAGTCACGGGCCCTTATTGCCTCTGGgGTACCCACAGTACCAGTGAAGAATCTTAACGGCTCCAGCCCTATCCACCCGGCTTTAGCTGGTATTACGGGTATTCTGATGAGCGCAGCAGGACTACCTGTATGTTTGACCCGTCCACCAAAACTAGTCCTGCATCCCCCACCTGTCAGCAAGAGTGACATAAGACCAATTCCTGGCATTGGGAACTGTTGCCGCAAGACCACCAAAAAACAAGCACGCAAAGGTAGAACACCTGAGGAAGTGGTAAAAAGGTACTTACAGAAGGTCAGGAATCCCCCAGAAGAAGATTGTACTATCTGTATGGAGGCTCTGGGGGGGCCCTCGGGGTATAAGGGTCCAGGTGTAGCAAGTGTTTCTCGTGCTGAGTCGGTTGGAAGACTGGCAGAGTGTGGACATCTTTATCACCTGCAGTGCCTAGTGGCCATGTACAACAATGGCAACAAAGACGGTAGCCTGCAGTGTCCCACATGCAAGACAATATATGGAGTAAAGACAGGCAACCAGCCCCCCGGTAAGATGGAGTACCATGTCATCCCGCACTCACTTCCAGGACACCCAGACTGCAAAACCATTCGCATCATCTACAACATACCCCCCGGGATACAGGGTCCTGAGCATCCAGATCCAGGGAAGCCTTTTACTTCAAGAGGATTTCCACGTCACTGCTATCTTCCAGACAATGAAAAAGGACGCAAGGCGTTAAGGCTGTTATTGGTGGCGTGGGATCGAAGGCTGATCTTCTCAGTGGGCACCTCCAGCACCACAGGAGAATCAGACACTGTCATCTGGAATGAGATCCATCACAAGACAGAATTTGGCTCCAATCTAACTGGACATGGCTATCCAGATTCTGGCTATACTGACAATGTGGTAGAGGAGCTCAAAGCCCAGGGCATCACTGAAGATGAGGAACAGCAACTGTGAAGAGGACAGGATGTGCTCGATGgcagtggggaaaaaaaaaagataatgctACTAGATCTCTATTTCTAGGAGTGCAACTGAGTTCAGAGATATGTGTGAATTCATATGACTCTTGATATATAACAATGTGACCAATCGGTACGAATAAGTATCCTGACCTCAACGCAAATTAGGGCACAGAATAACGAAACTAACGCGAGAACGATATTTGGTTAAAGGTGAAAGATGGGTTTGAAAGAAGAAGGAAAAGGAAAGTGTGAAAAGCAAGAATGGGAGGTGGAGGGGACTTGAGATAGAAAAATGTGGGAATAGGAAGACTAAGAAAATGCAGGTTATTAAAGCAGAGACGTGTTTTATCTGCTTGAGCGACGTTGCCGTGAGAGTTTGTGTAAGTTGTGTTAAACAGTTGTGTGAGTGTATTTAGTCAACTCCGGTACCTCCTAACTGGATTTCTGTTTTTTCAGTTTACTAGAATTCTGAAGTATAGTTTAGTGCAAATGAATGCttgtattataatttgtattatcaTACAACGTCACtcctttttttgtgtattgAGAATTTATACTATTTTTGTACGGATGATAACATGCGCATACGAttcagagttttgattaatccaaaaataagcagcaatttttttttttaaaccttgaaTTCATTTATGCTGGTTTATAGGAAGCATGATAAAACTAACTGTTCTTCCTCAGATAAAATACGACTTAAAAGTTGTCTCTAATGCATCTAACAGTTATAGATTGTACAAGATCACATTTTCACGGTACAGGAAACCAATTTAGTGGTTTTAGATAGGAAGTGCTGCTTTACTTCACATTCAGCATTAAGTATGCTGatctttattaaaagcatttataagcAAATGAATTTAGACGAGAGAAGGAATAGAAAGCACTTCGTTGCTAGAAAGATGGGTAGTTTATTGATCCCTGAAGGTCAGTTTAGTAATAGTTTGCCAAAATGAATTTTGCAAACTGTTATAGCTCTTCAGCTGTTCTTTACTGTCCTTATATCTCGTTTTAGGCCAGTCTGTATGTTAGGTCAGTTATTGACCTGTTTTATAACGATCCACGTTTAAGAACATGCcgttgtttgtgtatgtttgcatgtgtgAGCCCGTGCAACATGTGTACGTTTGCATTTGTGCTTGATTAAATGTAAGAGTGTATGCTGTGCATCCACAACACAGAGGTACGGTGTTACTCATCTGCATAATTGtcttcatgcatttattttgtatttctctttttttattattgtttttttgtattttcctagtttactgtattttaagaatgtttcaTGCTGAGAAATGTTATAcgtagttaatttttttttttctgtctatacaacaaatgctatttttgttCATAAGAAGTTGGGGTGGGGATAGCTTTGACCAACTGCATTATGTAGAGGTTTGCAATCTGTTAAGCATTAagataaaatgatcaaataaaaatttgtaattttgtgaGGGGGAAACTTTTTGATAAGCGGAGAATCGAGCATGATGGTACCtgtatatgaaaatgaaaaataaaagaataagcGAAATCAAA

Function

symbol description
dtx4 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in Notch signaling pathway and protein ubiquitination. Predicted to be located in cytosol. Predicted to be active in nucleoplasm.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase DTX1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K06058 DTX; deltex

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248080.1 True 4130 mRNA 0.46 9 21866992 21882353

Neighbor

gene id symbol gene type direction distance location
LOC122348936 NA coding downstream 19837 21833362 ~ 21847155 (-)
LOC122348927 NA coding downstream 34058 21827556 ~ 21832934 (-)
LOC122348917 LOC107720307 coding downstream 54403 21808791 ~ 21812589 (-)
muc13a NA coding downstream 110126 21738022 ~ 21756866 (-)
LOC122348885 NA coding downstream 130284 21734334 ~ 21736708 (-)
trnat-ugu NA coding upstream 1765 21884118 ~ 21884190 (-)
smu1b smu1b,LOC107720315,LOC107692159,LOC107746727,LOC107551820,LOC108431794 coding upstream 7999 21890352 ~ 21900526 (-)
rps6 rps6,LOC107551827,LOC107603014,LOC107720314,LOC107676127,LOC107746729 coding upstream 19114 21901467 ~ 21905151 (-)
LOC122345057 NA coding upstream 23348 21905701 ~ 21906555 (-)
zgc:111983 NA coding upstream 64508 21946861 ~ 21951154 (-)
G5047 NA non-coding downstream 246411 21612918 ~ 21620581 (-)
LOC122349798 NA non-coding downstream 1148102 20703476 ~ 20718890 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding downstream 1164694 20613916 ~ 20702298 (-)
G4934 NA non-coding downstream 1397977 20466162 ~ 20469015 (-)
G4930 NA non-coding downstream 1406808 20459541 ~ 20460184 (-)
G5327 NA non-coding upstream 161549 22043902 ~ 22044137 (-)
G5366 NA non-coding upstream 466161 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 530109 22412462 ~ 22414007 (-)
G5395 NA non-coding upstream 552260 22434613 ~ 22438354 (-)
G5369 LOC107746262 non-coding upstream 562605 22444958 ~ 22446648 (-)
LOC122348907 NA other downstream 67248 21761881 ~ 21799744 (-)
G5108 NA other downstream 94230 21724387 ~ 21772762 (-)
G5104 NA other downstream 100708 21718139 ~ 21766284 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other downstream 302915 21549617 ~ 21564077 (-)
ctnna2 ctnna2,LOC107689479 other downstream 456421 20906170 ~ 21410571 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other upstream 377086 22259439 ~ 22328929 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other upstream 390465 22272818 ~ 22287521 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other upstream 657331 22539684 ~ 22602648 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other upstream 982478 22864831 ~ 22903414 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other upstream 1031547 22913900 ~ 22916405 (-)

Expression


Co-expression Network