smu1b (smu1b,LOC107720315,LOC107692159,LOC107746727,LOC107551820,LOC108431794)


Basic Information

Item Value
gene id smu1b
gene name smu1b,LOC107720315,LOC107692159,LOC107746727,LOC107551820,LOC108431794
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21890352 ~ 21900526 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248092.1
TTAGATGCGCCATCTCCCTGCGCGCTACTCGGCACCTGACGGCAAcgttgcttgtttttttccattaatttttCCAGACGCGTCATTAATCCGCCCTCCCAAAAATCCGCAACAATTTGTGAGGGGTTTCTGTGATTTCAGACGTGTGAGCAATAAATACAACAGCACGTGTATTGGGCGGTCACGGGCACACGGTGTTCACGTGGCCGAGGACCAACACAACACAGCGCAGCGCTGGCGAAGACTGCCACAAGACATCTAGAGCCCGCTTTAATCGACAACCTCGCAGCCATGGACCTCGAAGTGGAATCGGCGGACGTGATCCGTCTGATCATGCAGTATCTGAAGGAAAATAATTTGCACCGCACTCTGGCGATGCTTCAAGAGGAGACGGCGGTGTCGCTCCACACGGTGGACAGCATCGACAGCTTCATCTCAGACATCAACAACGGCCAGTGGGATATCGTGCTGCTAGCGATCCAGTATCTCAAACTTCCCGACAAGCTGCTCATTGACCTGTAcgaacagATTGTGCTGGAGCTGATTGAGTTGGGCGAGCTGGGAGCCGCTCAGTGTTTACTGAAGCAAACCGATCCCATGATCATGCTGAAGCACACTCAACCCGAGCGTTACTCGCACATGGAGAGCCTTCTCACCAAGCCTGTTTTTGACTCGCAAGAGGCGTATCAAGTGGGCAGCAGTAAAGAAAAGCGCAGGCTGGCTATCGCTCAAGCTTTTGCAGGAGAAGTCTGTTTGGTGCCACCTTCTCGTCTCATGGCTCTTCTGGGCCAGGGCCGTATATGTGAGGGGGCTTTATACAGGTTACAGGAAACCAAAGCACTAAGGCAGTTTGGCTCATTAGCAATGCtgTCACTGAAGTGGCAGCAGCACCAGGGTCTCTTACCTCCAGGTATGTCTTTGGAACTGTTCCGGGGCAAAGGTGCACTGAAAGACATGGAGGAAGAGCGCTTCCCAACTCAGCTCAGTCGCCTCATAAAGTTTGGACCAAAGTCCCATGTAGAGTGTGCGCGATTCTCTCCTGATGGACAGTACTTGATTACTGGATCTGTTGATGGTTTCATTGAAGTCTGGAACTTCACCACTGGTAAAATTCGGAAGGATCTGAAGTACCAAGCTCAGGATAATTTCATGATGATGGATGAGGCTGTTTTGTGTCTGGCAGTAAGTCACGACTCTGACATGATCGCCTCTGGAGCTCAGGATGGAAAGATACAGGTGTGGAGGATTCTGAACGGGACGTGCCTGAATAGAATAGAACGAGCCCACAGCAAAGCGGTCACCTGTGTCTGCTTCAACAAGGACAGCAGTCAATTACTAAGTACCTCCTTTGACCAGATCATCAGGCTTCATGGTTTGAAATCAGGAAAAATGCTGAAGGAGTTTAGAGGCCATACGGCTCACATCAATGACGTCATCTTCTCACACGATGGCCACCATATCATCAGCGCGTCAGCAGATGGCACAGTAAAGGTCTGGAGCATGAAGACAATGGATTGCACCCACACAATAAAAACCCCTGACATTCCCGAGGGCACGGACATCACCGTTAACAACGTTGTGCTTGTCCCAAAGACTCCCGAGCACTTTGTAGTGTGCAATAGGACCAACACGGTGGTTGTTACGAACATTCACGGCCAGGTGATGAGGAGTTTCTGTTCAGGAGTAAGAGAGGGGGCAGACTTTGTTTGCTGCACGTTGTCTCCACGTGGAGAGTGGATTTATTGTGTGGGAGAAGACTATGTGCTGTACTGCTTCAGCACCATCACTGGCAAGCTTGAGAGAACCCTCACGGTACATGAAAAAGATGTGATCGGCATAACTCACCACCCCCATCAGAATCTCATCGCCACTTACAGCGAGGATGGCCTACTCAAACTCTGGAAGCCTTGAGTCTCGTCTTTTCATAATACGGACTTGTGTTTTATGTTCCAGACTTGTGGTATtccagcacacatacatatatgtctCTGCCTTTATACGCCTGCTATGACGTCGGTCTTCCATTTAAAGTGCTCCAAAACATTCACGTTTCTGTTGAACCTTAGCATCATGCACTGAGATGAAGGACCTCTTCGACATCTGAAGCGAACGACATCCAATTTTCGTAAAACTAGCGTTCCTCTGAAACTTCTAGTGGAGAACAATTAAAACTGCATGGATGTACTGGTCTTTTTGCTATTATTAAGGGCTTTGTAGTATTGTCTGTGATAATATCTGCATGCAAGATTTAGCATCGACATTAATGTGGTAAATATACTGGTTTTCTTTCCAGACTATTCTTTTGAGATCTTACACGTGAATGTATGTAATTTCTTTGATCACTTTGGCCAAAGACAAATAATTATTGTGTTCCCGCTCATAATGTGACCTCGCACTAGTCTTGGACTCATTGAGGACATTTTCACATATTTGTACTTGTGTACATTTAGAATTCTGATATGTTTAGAATTCATATGGTACAATATTGTGTTGATTATAACGGTTCAGTGTGTTTTAACACTCAACCAAGCACATCTACTTGTACTGCATGCAGGTGAACATATTATGCAGTTATTGCAATACTGTATGAAGTAATCAGTATGTTTATATTCTGATAATTACAGATTATTTTTTATCGAGGATATTCAAAATTTTTGTTGAATATTGGTATAACACTACTTTACAGTGTAAGTCTCTTGAGTATCTTGCAGTGTTGGTAAATAATGTGCTGATATTGCtgcagtttaattaaaattcaagcatgaataattcatgacGATCTTTTAATGAA

Function

symbol description
smu1b Orthologous to human SMU1 (SMU1 DNA replication regulator and spliceosomal factor).

NR:

description
PREDICTED: WD40 repeat-containing protein SMU1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248092.1 True 2791 mRNA 0.45 13 21890352 21900526

Neighbor

gene id symbol gene type direction distance location
trnat-ugu NA coding downstream 6162 21884118 ~ 21884190 (-)
dtx4b dtx4,LOC107676128,LOC107551788,LOC107692161,LOC107746726,LOC107603012 coding downstream 7999 21866992 ~ 21882353 (-)
LOC122348936 NA coding downstream 43197 21833362 ~ 21847155 (-)
LOC122348927 NA coding downstream 57418 21827556 ~ 21832934 (-)
LOC122348917 LOC107720307 coding downstream 77763 21808791 ~ 21812589 (-)
rps6 rps6,LOC107551827,LOC107603014,LOC107720314,LOC107676127,LOC107746729 coding upstream 941 21901467 ~ 21905151 (-)
LOC122345057 NA coding upstream 5175 21905701 ~ 21906555 (-)
zgc:111983 NA coding upstream 46335 21946861 ~ 21951154 (-)
ddx39aa LOC107676896,LOC107551870,LOC107603018,LOC107692155,LOC107712218,LOC106587357 coding upstream 167539 22068065 ~ 22072544 (-)
LOC122347503 LOC107712219,LOC107552443 coding upstream 210986 22111512 ~ 22118077 (-)
G5047 NA non-coding downstream 269771 21612918 ~ 21620581 (-)
LOC122349798 NA non-coding downstream 1171462 20703476 ~ 20718890 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding downstream 1188054 20613916 ~ 20702298 (-)
G4934 NA non-coding downstream 1421337 20466162 ~ 20469015 (-)
G4930 NA non-coding downstream 1430168 20459541 ~ 20460184 (-)
G5327 NA non-coding upstream 143376 22043902 ~ 22044137 (-)
G5366 NA non-coding upstream 447988 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 511936 22412462 ~ 22414007 (-)
G5395 NA non-coding upstream 534087 22434613 ~ 22438354 (-)
G5369 LOC107746262 non-coding upstream 544432 22444958 ~ 22446648 (-)
LOC122348907 NA other downstream 90608 21761881 ~ 21799744 (-)
G5108 NA other downstream 117590 21724387 ~ 21772762 (-)
G5104 NA other downstream 124068 21718139 ~ 21766284 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other downstream 326275 21549617 ~ 21564077 (-)
ctnna2 ctnna2,LOC107689479 other downstream 479781 20906170 ~ 21410571 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other upstream 358913 22259439 ~ 22328929 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other upstream 372292 22272818 ~ 22287521 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other upstream 639158 22539684 ~ 22602648 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other upstream 964305 22864831 ~ 22903414 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other upstream 1013374 22913900 ~ 22916405 (-)

Expression


Co-expression Network