rps6 (rps6,LOC107551827,LOC107603014,LOC107720314,LOC107676127,LOC107746729)


Basic Information

Item Value
gene id rps6
gene name rps6,LOC107551827,LOC107603014,LOC107720314,LOC107676127,LOC107746729
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21901467 ~ 21905151 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248130.1
CTATGTGAGACTTCGAGTCGGATATCCGGTCTCTTTTCGGTGGTGGACTCCAGGCGAGAAAGTCCTCCATAATGAAGCTCAATATCTCGTTCCCCGCCACTGGCTGCCAGAAGCTGATAGAAGTTGATGATGAGCGCAAATTGAGGATCTTCTATGAGAAGCGCATGGCCACAGAAGTGGTCGCAGACTCTCTGGGCGATGAGTGGAAGGGCTATGTTGTGCGCATCAGCGGAGGCAATGACAAGCAAGGCTTCCCCATGAAGCAGGGTGTGCTGACCCATGGACGTGTGCGTCTCCTCCTCAGCAAGGGTCACTCCTGCTACCGCCCTCGCCGTACTGGTGAGCGTAAACGCAAGTCTGTCCGTGGCTGCATCGTTGACGCCAACCTCAGCGTTCTCAACTTGGTCATTGTCAGGAAGGGTGAGAAGGATATTCCTGGGCTGACTGATAGCACTGTCCCCCGCCGCCTGGGACCCAAGAGGGCTAGCAGGATCCGTAAGCTCTTCAACCTGTCCAAAGAGGATGATGTCAGGCAGTATGTGGTCAGGAGACCCCTCACTAAAGAAGgtAAGAAGCCCAGAACTAAGGCCCCTAAGATTCAGCGCCTGGTTACACCCCGTGTGCTCCAACACAAGCGCAGACGCATTGCTCTCAAGAGGCAGCGCACACTGAAGAACAAGGAGGAGGCCGCAGAATACACCAAACTGCTGGCCAAGAGGATGAAGgagGCCAAAGAGAAACGTCAAGAAAAGATCGCCAAGAGACGCCGTCTCTCCTCTCTGAGAGCCTCCACATCCAAGTCAGAGTCAAGCCAGAAGTGAGACATGTGCCtcacaaataaaacatgattttgttgAACGTTCTAAA

Function

symbol description
rps6 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Is expressed in liver. Orthologous to human RPS6 (ribosomal protein S6).

NR:

description
PREDICTED: 40S ribosomal protein S6

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0006412 translation biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0042593 glucose homeostasis biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005634 nucleus cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02991 RP-S6e, RPS6; small subunit ribosomal protein S6e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248130.1 True 867 mRNA 0.54 6 21901467 21905151

Neighbor

gene id symbol gene type direction distance location
smu1b smu1b,LOC107720315,LOC107692159,LOC107746727,LOC107551820,LOC108431794 coding downstream 941 21890352 ~ 21900526 (-)
trnat-ugu NA coding downstream 17277 21884118 ~ 21884190 (-)
dtx4b dtx4,LOC107676128,LOC107551788,LOC107692161,LOC107746726,LOC107603012 coding downstream 19114 21866992 ~ 21882353 (-)
LOC122348936 NA coding downstream 54312 21833362 ~ 21847155 (-)
LOC122348927 NA coding downstream 68533 21827556 ~ 21832934 (-)
LOC122345057 NA coding upstream 550 21905701 ~ 21906555 (-)
zgc:111983 NA coding upstream 41710 21946861 ~ 21951154 (-)
ddx39aa LOC107676896,LOC107551870,LOC107603018,LOC107692155,LOC107712218,LOC106587357 coding upstream 162914 22068065 ~ 22072544 (-)
LOC122347503 LOC107712219,LOC107552443 coding upstream 206361 22111512 ~ 22118077 (-)
si:ch73-90k17.1 NA coding upstream 214195 22119346 ~ 22122849 (-)
G5047 NA non-coding downstream 280886 21612918 ~ 21620581 (-)
LOC122349798 NA non-coding downstream 1182577 20703476 ~ 20718890 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding downstream 1199169 20613916 ~ 20702298 (-)
G4934 NA non-coding downstream 1432452 20466162 ~ 20469015 (-)
G4930 NA non-coding downstream 1441283 20459541 ~ 20460184 (-)
G5327 NA non-coding upstream 138751 22043902 ~ 22044137 (-)
G5366 NA non-coding upstream 443363 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 507311 22412462 ~ 22414007 (-)
G5395 NA non-coding upstream 529462 22434613 ~ 22438354 (-)
G5369 LOC107746262 non-coding upstream 539807 22444958 ~ 22446648 (-)
LOC122348907 NA other downstream 101723 21761881 ~ 21799744 (-)
G5108 NA other downstream 128705 21724387 ~ 21772762 (-)
G5104 NA other downstream 135183 21718139 ~ 21766284 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other downstream 337390 21549617 ~ 21564077 (-)
ctnna2 ctnna2,LOC107689479 other downstream 490896 20906170 ~ 21410571 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other upstream 354288 22259439 ~ 22328929 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other upstream 367667 22272818 ~ 22287521 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other upstream 634533 22539684 ~ 22602648 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other upstream 959680 22864831 ~ 22903414 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other upstream 1008749 22913900 ~ 22916405 (-)

Expression


Co-expression Network