eif3f (eif3f,LOC107665937,LOC107723164,LOC107758850)


Basic Information

Item Value
gene id eif3f
gene name eif3f,LOC107665937,LOC107723164,LOC107758850
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6994966 ~ 6998212 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248267.1
cttcttctctgtttaTCATCATCCTTCACTTCCTCTACGAAAACATGGCAGTCCACGGCCCGTTCGTGAAAATCCACCCGGTGGTTTTGGCATCGATTGTGGACTCATACGAGCGCAGAAATGAGGGAGCGAGTCGCGTGATCGGAACATTATTAGGAACAACAGACAAACATTCCGTTGAAGTCACCAACTGCTTCTCTGTTCCTCACAATGAGTCTGAAGATGAGGTGGCTGTTGACATGGAGTTTGCCAAGAACATGTACGAACTCCATAAGAAGGTTTCGCCAAGTGAAGTCATTATCGGATGgtATGCCACGGGATATGACATCACAGAGCACTCCGTTCTGATTCATGAGTATTACAGCCGAGAGGCTCCGAACCCCATTCACCTGACCGTGGACACAGCACTGCAGAGCAACAAAATGAACATCCGTGCCTATGTCAGTTCTCAGATGGGCGTTCCGGGCAAGACGGTCGGTGTCATGTTCACCCCGCTGACAGTCAAGTACATTTACTATGACACAGAGCGCATCGGAGTTGAGCTTCTACAGAGAACTCGTGCATCTCCCAGTCGAACCAACGGACTGACCACAGACCTGGCCCAGGTGGGCAGTGCAGCAGGACGTGTACAAGAAATGCTCGCAACAATGCTCACATATATAGAAGATGTATTGTCCGGTAAAGTGATGGCAGACAACAGTGTCGGTCGTTTCCTGATGGATCTTGTGAACAAAGTGCCCAAGATCACTGCAGAAGATTTTGAGAGCATGCTGAACTCCAACATTAATGATCTTTTGATGGTGACCTACCTGTCAAATCTCACTCAAGCTCAGATCGCGCTTAACGAGAAGCTAGTTGTTCTGTgatccaaaaaaattaaataaaaatatgtttgtcaATCCAA

Function

symbol description
eif3f Predicted to enable translation initiation factor binding activity. Predicted to contribute to translation initiation factor activity. Acts upstream of or within cranial skeletal system development. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex, eIF3m. Is expressed in female organism. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human EIF3F (eukaryotic translation initiation factor 3 subunit F).

NR:

description
PREDICTED: eukaryotic translation initiation factor 3 subunit F

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03249 EIF3F; translation initiation factor 3 subunit F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248267.1 True 904 mRNA 0.47 8 6994966 6998212

Neighbor

gene id symbol gene type direction distance location
npy2rl npy2rl,LOC107714138,LOC107692719,LOC107590775,LOC107665946,LOC107758849,LOC108439369 coding upstream 19487 6967526 ~ 6975479 (+)
LOC122351785 LOC107714151,LOC107758870,LOC107665938,LOC107590728,LOC107564312,LOC107692632 coding upstream 73754 6919264 ~ 6921212 (+)
LOC122351754 LOC107714136,LOC107564298,LOC107692720,LOC107665943,LOC107590774,LOC107758848 coding upstream 121187 6868765 ~ 6873779 (+)
LOC122351770 lratb,LOC107714151,LOC107692632,LOC107564312,LOC107758870,LOC107665938,LOC107590728 coding upstream 130318 6862481 ~ 6864648 (+)
fgb fgb,LOC107692638,LOC107714148,LOC107564337,LOC107665922 coding upstream 155677 6835671 ~ 6839289 (+)
zgc:77880 zgc:77880,LOC107692630,LOC107723165,LOC107758853,LOC107665980,LOC107590776,LOC108439367 coding downstream 213 6998425 ~ 7002996 (+)
pip4p1b tmem55bb,LOC107723169,LOC107665981,LOC107590777,LOC107565103,LOC107721780 coding downstream 5255 7003467 ~ 7007854 (+)
dachb dachb,LOC107665972 coding downstream 31448 7029660 ~ 7062000 (+)
atp1b1b LOC107723190,LOC107692627,LOC107564268,LOC107665977,LOC107758877,LOC107586865 coding downstream 164096 7162308 ~ 7169347 (+)
LOC122330119 LOC107723198,LOC107692626,LOC107564241,LOC100334711 coding downstream 183033 7181245 ~ 7185282 (+)
LOC122351804 lratb,LOC107665934,LOC107590749,LOC107758869,LOC107714130 non-coding upstream 78269 6912279 ~ 6916697 (+)
LOC122351810 NA non-coding upstream 82701 6911081 ~ 6912265 (+)
LOC122351800 lratb,LOC107714130,LOC107590749,LOC107665934,LOC107758869,LOC108258974 non-coding upstream 83891 6910376 ~ 6911075 (+)
G1405 ugt5b1,LOC107692647,LOC107714140,LOC107564400 non-coding upstream 403711 6583976 ~ 6591255 (+)
G1415 LOC107747400,LOC107719078 non-coding upstream 453435 6539629 ~ 6541531 (+)
G1565 LOC107590778 non-coding downstream 66913 7065125 ~ 7068197 (+)
G1577 LOC107723159,LOC107723172,LOC107565422,LOC107758837,LOC107590752,LOC107758876 non-coding downstream 137584 7135796 ~ 7143741 (+)
LOC122336506 NA non-coding downstream 319990 7318202 ~ 7321769 (+)
LOC122330513 NA non-coding downstream 402919 7401131 ~ 7408205 (+)
G1677 NA non-coding downstream 515343 7513555 ~ 7582090 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other upstream 134696 6846500 ~ 6860270 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other upstream 149418 6711635 ~ 6845548 (+)
rgs11 rgs11,LOC107692642,LOC107590769,LOC107722934,LOC107714145 other upstream 212825 6771486 ~ 6782141 (+)
G1414 NA other upstream 458009 6533502 ~ 6536957 (+)
G1318 NA other upstream 707768 6285858 ~ 6287198 (+)
mpc2a LOC107564279,LOC107692629,LOC107665976,LOC108258922 other downstream 148661 7146873 ~ 7152220 (+)
spink4 LOC107758865,LOC107692710,LOC107723196,LOC107565379 other downstream 722053 7720265 ~ 7721425 (+)
pcdh10a pcdh10a,LOC107751533,LOC107557555,LOC107746446 other downstream 956499 7954711 ~ 7985615 (+)
cxcl8a LOC107714205,LOC107702289,LOC107562973,LOC107692705,LOC107565350 other downstream 1608613 8606825 ~ 8607785 (+)
ppp2r2ca ppp2r2ca,LOC107692591,LOC107563918,LOC107742501,LOC108241547,LOC106531115 other downstream 1624946 8623158 ~ 8634399 (+)

Expression


Co-expression Network