fgb (fgb,LOC107692638,LOC107714148,LOC107564337,LOC107665922)


Basic Information

Item Value
gene id fgb
gene name fgb,LOC107692638,LOC107714148,LOC107564337,LOC107665922
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6835671 ~ 6839289 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249037.1
CACTGAATTATCTACAGCTGAAAACCTCACACTTTCACTGGAACTATAGTGTGAGCTCCACAAAAATGAAGCTTCGCTTTTTACTTTGCCTGTGTATTGTAGGAGCTCTTGCACAGAGCGACTATGATGATGAAAGTGATGGAGcggaaagCAAAAAAGAAcCTAAAGAAGTCATAGATGCCAGGGGTCATCGTCCAGTTAGTAGAGGTCGTGAGACATACTCAGCAGGCCCAGCCGCTCCACCCCCCATCAGCGGGGGAAGCCGTTACCGGGGAAGACCAACCGCAGCACCGGTGGGAAAACCGGTGGCGCAGGAGAAGGAAGAGCAGCCAGATTCGGGTGGATGTACCCACATGTCTGAGAAAATGggTGTGTTGTGTCCCACAGGTTGTGAACTAAAGAAAACCCTCCTGAAGCAAGAACGTAACGTGAGGCCAACTGTAGATCAGCTCAAAAGATCTGTGGATGAGCTGACCCAGTCCACCAACTCCGTTTATGGCTACGTCTTGGATATGACTGCAGAAGTAGCACAAAGACAAAGAGTCACCGAGGgCAATGGGTTGCTGGTTGGCCAGTACACAGAGAGCCTAGAGACCCAGCATGCTTATATTAAGGATGCTGTGGATGTCACCTTCCCCCAGAACATCAAAATCCTACAGGGTGTGCTTGAAAAGATTCGTGATAAGATTCAGCGTTTGGAGAAAGCCATTACTGCTCAGAGGGCCAAATGCCAAATGCCTTGTAAAGTCAGCTGCCCAATTCCTGTGGTTTCTGGCAAGGAGTGCGAAGACATCATTCGCAAAGGAGGAGAGGATTCTCAGATGTACCTCATACGGCCTGATCCACTCAGCACACCGTACAAGGTCTTCTGCGATCAGACAAGTAAAAATGGAGGTTGGGTGCTCATCCAGAACCGTATGGATGGCAGTGTTGATTTTGGCAGGCGTTGGGATGACTACCGAAGAGGCTTTGGAAACATTGCATTTGATGTGGGCAAAGGCCACTGCCAGACTCCTGGTGAGTACTGGTTGGGTAACGACCGTGTTAGTCAGCTTACAAAGATGGGTCCCACTGAGCTTCTGGTTGAAATGGAAGACTGGTCCGGTTCAAAGGTCTACGCTCAGTATGAGCAGTTCACCGTGCAGGGCGAAGCCACAAACTACATCCTAGCAGTCAGTCGTTACTCAGGAACAGCTGGAAACACATTTTTGGATGGTGCAACAGAACTGTTTGGAGAGAACCGTACCATGACCATTCATAACGGCATGATGTTCAGCACCTACGACAGAGATAATGACAAATGGATACCTGGAGATCCTTCTAAGCAGTGTTCAAGAGAAGATGGCGGAGGATGGTGGTACAACCGATGCCACTCTTGTAATCCTAATGGGCGATACTATTGGGGAGGAtcttatacaaaatatatggcCAAGCATGGGACAGATGATGGCATTGTATGGATGAACTGGAAGGGCTCGTGGTATTCACTCAAATCTATCAGCATGAAGATCAGACCTTACttcaaacaataataaaacttgaaaaatgAGATGCAGTATTCTTGAGCACATTCCTCAATAGCACTCATTACATTTAGGCTTTTTTGAGAATATAGGATGATAATAAAAACTGAACCTGAACATTTCAAGATTCATTTCACAgttcatatatacacaaaaaagaGTGAATTAagtgtattaatgtatttaaaagacatgggggtaaaaaaaacaagatgcaaCACAAGAACTGTAAGAAGTATTGTTAGGAATGTAACACAATCTGCCTAATTCTCATTAAAGCTGACCTATAAAAAATTTaacttgtctttttaatttatatagttttttttttattattatggagCATTTTGGGACTTCATGATTGTCCTTGATTTGTGTGCTTGATTGTGTCAACTTCTATGAAATAAACGTTCTTAAAAGGTA

Function

symbol description
fgb Predicted to enable signaling receptor binding activity. Acts upstream of or within blood coagulation, fibrin clot formation. Predicted to be located in extracellular region. Predicted to be part of fibrinogen complex. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in cardiovascular system disease (multiple); congenital afibrinogenemia; and end stage renal disease. Orthologous to human FGB (fibrinogen beta chain).

NR:

description
PREDICTED: fibrinogen beta chain

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0051258 protein polymerization biological_process
GO:0007165 signal transduction biological_process
GO:0005577 fibrinogen complex cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K03904 FGB; fibrinogen beta chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249037.1 True 1946 mRNA 0.44 8 6835671 6839289

Neighbor

gene id symbol gene type direction distance location
trim2b trim2b,trim2,LOC107665973,LOC107564373,LOC107758867,LOC107714129 coding upstream 7519 6815110 ~ 6828152 (+)
si:dkeyp-75b4.10 NA coding upstream 22027 6812053 ~ 6813644 (+)
si:dkeyp-75b4.8 LOC107692693,LOC107565146 coding upstream 29337 6803199 ~ 6806334 (+)
pdia2 LOC107692722,LOC107714133,LOC107663318,LOC107565477,LOC107722973,LOC107590747 coding upstream 32912 6798322 ~ 6802759 (+)
LOC122342636 LOC107692694,LOC107565156,LOC107590746,LOC107722971,LOC107714127,LOC107663320 coding upstream 39283 6795394 ~ 6796388 (+)
LOC122351770 lratb,LOC107714151,LOC107692632,LOC107564312,LOC107758870,LOC107665938,LOC107590728 coding downstream 23192 6862481 ~ 6864648 (+)
LOC122351754 LOC107714136,LOC107564298,LOC107692720,LOC107665943,LOC107590774,LOC107758848 coding downstream 29476 6868765 ~ 6873779 (+)
LOC122351785 LOC107714151,LOC107758870,LOC107665938,LOC107590728,LOC107564312,LOC107692632 coding downstream 79975 6919264 ~ 6921212 (+)
npy2rl npy2rl,LOC107714138,LOC107692719,LOC107590775,LOC107665946,LOC107758849,LOC108439369 coding downstream 128237 6967526 ~ 6975479 (+)
eif3f eif3f,LOC107665937,LOC107723164,LOC107758850 coding downstream 155677 6994966 ~ 6998212 (+)
G1405 ugt5b1,LOC107692647,LOC107714140,LOC107564400 non-coding upstream 244416 6583976 ~ 6591255 (+)
G1415 LOC107747400,LOC107719078 non-coding upstream 294140 6539629 ~ 6541531 (+)
G1367 NA non-coding upstream 378313 6456067 ~ 6457358 (+)
G1358 NA non-coding upstream 392195 6437808 ~ 6443476 (+)
LOC122351800 lratb,LOC107714130,LOC107590749,LOC107665934,LOC107758869,LOC108258974 non-coding downstream 71087 6910376 ~ 6911075 (+)
LOC122351810 NA non-coding downstream 71792 6911081 ~ 6912265 (+)
LOC122351804 lratb,LOC107665934,LOC107590749,LOC107758869,LOC107714130 non-coding downstream 72990 6912279 ~ 6916697 (+)
G1565 LOC107590778 non-coding downstream 225836 7065125 ~ 7068197 (+)
G1577 LOC107723159,LOC107723172,LOC107565422,LOC107758837,LOC107590752,LOC107758876 non-coding downstream 296507 7135796 ~ 7143741 (+)
rgs11 rgs11,LOC107692642,LOC107590769,LOC107722934,LOC107714145 other upstream 53530 6771486 ~ 6782141 (+)
G1414 NA other upstream 298714 6533502 ~ 6536957 (+)
G1318 NA other upstream 548473 6285858 ~ 6287198 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other upstream 748016 6057404 ~ 6087655 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other upstream 954537 5879460 ~ 5881134 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other downstream 7211 6846500 ~ 6860270 (+)
mpc2a LOC107564279,LOC107692629,LOC107665976,LOC108258922 other downstream 307584 7146873 ~ 7152220 (+)
spink4 LOC107758865,LOC107692710,LOC107723196,LOC107565379 other downstream 880976 7720265 ~ 7721425 (+)
pcdh10a pcdh10a,LOC107751533,LOC107557555,LOC107746446 other downstream 1115422 7954711 ~ 7985615 (+)
cxcl8a LOC107714205,LOC107702289,LOC107562973,LOC107692705,LOC107565350 other downstream 1767536 8606825 ~ 8607785 (+)

Expression


Co-expression Network