ddx39aa (LOC107676896,LOC107551870,LOC107603018,LOC107692155,LOC107712218,LOC106587357)


Basic Information

Item Value
gene id ddx39aa
gene name LOC107676896,LOC107551870,LOC107603018,LOC107692155,LOC107712218,LOC106587357
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22068065 ~ 22072544 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249987.1
CAATGGGAGAGCTCAGTTTTTATTTCCGGGGAGCGCTATAAACTTAAGGCCTAACTGCACGATTCACGAGTGCCGACGTTCAGTACCAACATCCAAAGTTACCATGGCCGAAAACGATGTTGATAATGAGCTGTTGGACTATGAGGAAGACGAGGAGCCGCAGACCGCTGCAGACAGTGCAGTCCCAGCCGGCAAGAAGGAGGTGAAAGGCTCCTACGTCTCCATTCACAGCTCTGGCTTCCGTGATTTCCTCTTGAAACCAGAGCTGCTCCGTGCGATCGTCGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAACACGAGTGCATTCCTCAAGCCATCTTGGGTATGGACATCCTGTGCCAGGCAAAGTCTGGTATGGGAAAAACTGCCGTGTTTGTGCTTGCAACACTTCAGCAGATCGAGCCAGTGGATGGGCAGGTTTCTGTGTTGGTTATGTGCCACACACGTGAACTGGCCTTTCAGATCAGTAAAGAGTACGAGCGCTTCTCCAAGTACATGTCCAACGTTAAGTGTGCCGTCTTCTTCGGTGGTCTGTCCATAAAGAAGGACGAGGAGGTGCTGAAGAAGAACTGCCCTCACATTGTAGTGGGAACACCAGGAAGAATCCTTGCCCTCATTCGCAACAAGACCTTGAACCTCAAAAATGTCAAACACTTTGTTTTGGATGAGTGTGACAAGATGCTGGAGCAGCTCGATATGAGACGGGATGTCCAGGATATCTTCAGACTGACCCCTCACGAGAAGCAGTGCATGATGTTCAGCGCCACATTAAGCAAAGAGATCAGACCAGTCTGTCGCAAATTCATGCAAGATCCAATGGAGGTGTTTGTTGACGACGAGACTAAGCTTACCCTGCATGGCCTTCAGCAATACTACGTCAAACTGAAGGACAGCGAAAAGAACCGCAAGCTGTTTGACCTGCTTGACGTCCTCGAGTTCAACCAGGTGGTGATATTTGTCAAGTCAGTTCCTCGTTGTGTGGCTCTGTCTCAGCTGTTGGTTGAACAGAATTTCCCTGCCATTGCGATCCACAGGGGAATGGCTCAGGAAGAAAGATTGTCCCGGTATCAACAGTTCAAAGATTTTCAGCGACGGATCCTGGTGGCTACTAATCTGTTTGGTCGTGGGATGGATATCGAGCGTGTTAATATCGTTTTCAACTATGACATGCCTGAGGACTCAGACACGTACCTACACAGGGTTGCTCGTGCTGGTAGGTTTGGTACAAAAGGATTGGCCGTTACTTTTGTATCAGATGAGACGGATGCAAAGACTCTGAATGATGTGCAGGACCGCTTTGAAGTCAACGTCGCAGAGTTGCCAGAGGAAATCGACATCTCCACCTACAttGAGCAGTCCAGATGAGCTAGAGGTGTTCTGAAGAGGTGATGGCTGTGGTCCAGCTCTCCCTATCTGTGTCTCAGTGTAGTTTCTGTGACAGCGGGAAGAGAGAACCGcccagttttattttcatatgatcatgcccaaaaagccttttctccatttgtgtactttattttattgttccaGGGGATTGGTTGGGAATcctttttttacttctgttaaTTGTGGTTGGTTGTTGGTTTGAGaattaaaaacgttttatacTACAA

Function

NR:

description
PREDICTED: ATP-dependent RNA helicase DDX39A-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13182 DDX39; ATP-dependent RNA helicase DDX39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249987.1 True 1635 mRNA 0.48 10 22068065 22072544

Neighbor

gene id symbol gene type direction distance location
zgc:111983 NA coding downstream 116911 21946861 ~ 21951154 (-)
LOC122345057 NA coding downstream 161510 21905701 ~ 21906555 (-)
rps6 rps6,LOC107551827,LOC107603014,LOC107720314,LOC107676127,LOC107746729 coding downstream 162914 21901467 ~ 21905151 (-)
smu1b smu1b,LOC107720315,LOC107692159,LOC107746727,LOC107551820,LOC108431794 coding downstream 167539 21890352 ~ 21900526 (-)
trnat-ugu NA coding downstream 183875 21884118 ~ 21884190 (-)
LOC122347503 LOC107712219,LOC107552443 coding upstream 38968 22111512 ~ 22118077 (-)
si:ch73-90k17.1 NA coding upstream 46802 22119346 ~ 22122849 (-)
f8a zgc:101679,LOC107551875,LOC107676892,LOC107712230,LOC107692150,LOC107603023,LOC107718725,LOC108428241 coding upstream 55799 22128343 ~ 22132730 (-)
si:ch211-243a20.4 NA coding upstream 60318 22132862 ~ 22136035 (-)
grin2bb grin2bb,grin2b,LOC107676879,LOC107551907,LOC107692185,LOC107603025,LOC108258482 coding upstream 73666 22146210 ~ 22235522 (-)
G5327 NA non-coding downstream 23928 22043902 ~ 22044137 (-)
G5047 NA non-coding downstream 447484 21612918 ~ 21620581 (-)
LOC122349798 NA non-coding downstream 1349175 20703476 ~ 20718890 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding downstream 1365767 20613916 ~ 20702298 (-)
G4934 NA non-coding downstream 1599050 20466162 ~ 20469015 (-)
G5366 NA non-coding upstream 275970 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 339918 22412462 ~ 22414007 (-)
G5395 NA non-coding upstream 362069 22434613 ~ 22438354 (-)
G5369 LOC107746262 non-coding upstream 372414 22444958 ~ 22446648 (-)
G5404 NA non-coding upstream 453572 22526116 ~ 22526422 (-)
LOC122348907 NA other downstream 268321 21761881 ~ 21799744 (-)
G5108 NA other downstream 295303 21724387 ~ 21772762 (-)
G5104 NA other downstream 301781 21718139 ~ 21766284 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other downstream 503988 21549617 ~ 21564077 (-)
ctnna2 ctnna2,LOC107689479 other downstream 657494 20906170 ~ 21410571 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other upstream 186895 22259439 ~ 22328929 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other upstream 200274 22272818 ~ 22287521 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other upstream 467140 22539684 ~ 22602648 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other upstream 792287 22864831 ~ 22903414 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other upstream 841356 22913900 ~ 22916405 (-)

Expression


Co-expression Network