XLOC_006588 (tspan15)


Basic Information

Item Value
gene id XLOC_006588
gene name tspan15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22924024 ~ 22961610 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012728
CATCAATCAAACCATTGTCATTCATGTCGGTGCGGGAGTGATAATGGATCTCTGCTCTCTCAGGTAGACGATACGAAACAAACCAGGAAGTGTTTACAGGAACGCAGTTCGTGCCTTATATTAGTTTTAAACATGACCGGTGAAGTCCGATATTGCGAGAAGTGCTCGTACTTCTTCCTCAAGTTCTCGTTAATCGGATATGCAACAATTTTCTGGTTGATCGGGGGCTTTATATTGGCCATCGGTATTTATGCCGAGGTGGAGAGGCAACGATACAAAACATTGGAAGGAGTGTTTCTGGCTCCTGCCATCATCCTCATTGTGCTTGGTATCATCATGTTTATTGTTTCCTTCATCGGGGTTCTGGCATCTCTCAGAGACAACTTGTGCCTTCTCAAAGTGTTTCTTTACATGCTGGCTCTCTGTCTCGTTTTGGAGCTCGTCGGTGGGATCGTTGCTCTGATTTTTAAGAACCAGACAGTGGACATTCTCAACAAAAACATCCGTAAAGGCATGGTGAATTACTATGATGACCTTGATTTCAAAAACATCATGGACTTTGTTCAGAAAACGTTCAAATGTTGTGGAGGAACCGAGTACCAGGACTGGGAGGTTAACATGTATCATAACTGCTCTGCTCCTGGTCCACTGGCCTGTGCAGCTCCTTACACCTGCTGTATCGTCACGCCTGGAGAAGTTGTTAATACGATGTGCGGATACAAGACCCTGAATAAGGAGAGAAATGAAAATACAAACGTTATCTACATTCGTGGCTGTACCGACGCCGTCTTCATTTGGTTAATAGACAACTACAAAACAATGGCTGGACTTCTTCTAGGCATCTTTCTTCCGCAGttcttcGGCGTGATCTTCACCTGGCTTTATATTACTCGCGTGGAAGATGCCATCGAGGAGTATGGATACTATATGGATGGTCTGCTGCAGTCTGATAGCGTTCAACCGGAAACAAAACGCCAAAGCAAGCTGGCCAAATGCTGCAAATGCATGCCTTTGATGGACTAAGTacaatctctttaaaaaaaaaaaaaaaaaggaaagcctTATATCGACTTCTAAAAAAGGGATTTTTACACTTTATCCTGAATGAAATGAACTGTTTGTAGCTCTGCAAAACACAACTGTGCTGTTACTTTCGAAATTTCAGCCTCAGGTACACTGTGCcaaacaagtctttttttttttttttttttttttactgtcaatAAGTTTTTCACAGTTACACTCAGTGTTCATCATTTCATCTGTCAGCTGAAAATGGGCTAGTTATTTAGTGTCAAAATGTCCTGATGCTATAGGACTAACCTGAATGAGGATCATGGTAAATCACACCTGAAGCTCACACCAAAGATAACATATATTTACATGCTACTGACCCAGTCAGAACAGCTAAAGCTTTTCACAGTTTAGCTCTGTTTAACAGGGAAACTGAAGTGATATTTGGTACTCTGTCAGTCTTGGGttataaaatgtctttttaaatttCCAGTGCATATATGACAACTTCTGCTGTGTGAAATGTGGTGCATTCATCATAATACGGGTGCTGTCTCTTTTGTTTGAATGTTACCTGTATATCGAAAACATGGGTTTATAATGTAAATTCTGATCATTTCTATACTTGCAATTCTTTTAAACGCAATATCTTGGTTGCATCGCCATATTTCCTGTAATTGTTTTtactaatatttaattttgtaaatataatGTCCAATATTACATACGTTTGAGCCTTTTCCTAAAGCAGGGTTTCTTTTTTCATTAATACAGCTTATTATGCGTTTATTGCGTAATATTTGAATCAGGgatatttttttaatgagcaGATGTTTTGTTGTGGTTCTAATGATAGTTTTAACacgtatgtatgcatgcatacatacatacatccatccatacataaatacatgcatacatacactgtaaaaaaattaatctgttgttttactttattttactttcacccagcaggggtgccagaaaaaaaaaaaccctggtaaaataattactgtaatttattgtaaaataaccaacaataaaTGACTGAAATTTACAGTTAAATAACAGACATAAGATTACAGACATGTCCTTAAATGAACAtttccagtaaatttctgtaatttaacatctgttattttacacaaaatttctgtaatttaacgggcgTTATTTTACCATAAATTTCTGTACTTTAGCGGTCgttattttatgataaatttctgtaatttaatggtcgTTATtatacggtaaatttctgtatttaatgcctgttgttttactttttttctggcaccccagctgctggcAAAAAATTtgaataacagtttttttttttttttttacatcatactTTTGGCTTTTATATTTATTCTTCCTTCATGTTTGCTTggcaaaaacatgaaaaaatccAAGTAAACTGTATATTTAGCATAATACACAGGgcgtttttcttttgttttatgcagcatgTGCTGTTTCAtgtcattaaataaaaacaaattaatcatttggtatatttatttacattttgccaCGGTTTATATGTAAAATGCACtacatgttatattattttcagtGCCACTACTCATTGAAAAATACACTGCAAGAAGTGAATATTAAGCCTTAACATTTTAGCATTTTGTGTGATATAAAACTTTTATaggatttgtgtgtttatgtattgaCTTGACTGTTAAAGCTTGAGTATAGCCCTGAACACAGCGAGCGTCCtgctgaataaatgaataaaagatgtTTACAGAGCTGTTCTGCTGCTTCACTGCTCGTTCTTTTCTCTTCTCGTCATGCTGCTTTGACATTGCAAGGGGACTCTGTCTCTCTCAATATTGTACTTTAGACATGGACTAGACAGGGGTTTGTGTTTTATCTGCTCATCTCTTCCATTTCCATTGTTTCAAAGTGCAGCTGTGAGTAATGATTAAAAAAGCCATCAAAATCTGACAGCAATTTGCAACTTTTTTGactaatttgtatgatctcattcatgcATTTTATGGCTCATCTTCAATTAAGTTTGATggcacacctccttttaaaaatatacgtttttatattaattaaattgtatgaatttacGACAAAGCATAAAATAGCTTGTTTCTGATTCA
>TCONS_00012729
ATCAAACCATTGTCATTCATGTCGGTGCGGGAGTGATAATGGATCTCTGCTCTCTCAGGTAGACGATACGAAACAAACCAGGAAGTGTTTACAGGAACGCAGTTCGTGCCTTATATTAGTTTTAAACATGACCGGTGAAGTCCGATATTGCGAGAAGTGCTCGTACTTCTTCCTCAAGTTCTCGTTAATCGGATATGCAACAATTTTCTGGTTGATCGGGGGCTTTATATTGGCCATCGGTATTTATGCCGAGGTGGAGAGGCAACGATACAAAACATTGGAAGGAGTGTTTCTGGCTCCTGCCATCATCCTCATTGTGCTTGGTATCATCATGTTTATTGTTTCCTTCATCGGGGTTCTGGCATCTCTCAGAGACAACTTGTGCCTTCTCAAAGTGTTTCTTTACATGCTGGCTCTCTGTCTCGTTTTGGAGCTCGTCGGTGGGATCGTTGCTCTGATTTTTAAGAACCAGACAGTGGACATTCTCAACAAAAACATCCGTAAAGGCATGGTGAATTACTATGATGACCTTGATTTCAAAAACATCATGGACTTTGTTCAGAAAACGTTCAAATGTTGTGGAGGAACCGAGTACCAGGACTGGGAGGTTAACATGTATCATAACTGCTCTGCTCCTGGTCCACTGGCCTGTGCAGCTCCTTACACCTGCTGTATCGTCACGCCTGGAGAAGTTGTTAATACGATGTGCGGATACAAGACCCTGAATAAGGAGAGAAATGAAAATACAAACGTTATCTACATTCGTGGCTGTACCGACGCCGTCTTCATTTGGTTAATAGACAACTACAAAACAATGGCTGGACTTCTTCTAGGCATCTTTCTTCCGCAGGTAAGACTCATCAGAGATAAGGTGATGTAGATTCTCAGTGCAAGTCGTTTTTAATGATGCAAGTGgtacactttaaataaaatatactttgaCTTATCTTT

Function

symbol description
tspan15 Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN15 (tetraspanin 15).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0051604 protein maturation biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-050417-295 Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN15 (tetraspanin 15).

Ensembl:

ensembl_id ENSDARG00000039455

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012728 False 3146 mRNA 0.36 8 22924024 22961610
TCONS_00012729 True 951 mRNA 0.43 7 22931238 22961605

Neighbor

gene id symbol gene type direction distance location
XLOC_006587 rufy2 coding downstream 16764 22876467 ~ 22907260 (-)
XLOC_006586 pbld2 coding downstream 61891 22849796 ~ 22862133 (-)
XLOC_006585 BX530068.1 coding downstream 76540 22843830 ~ 22847484 (-)
XLOC_006584 pbld coding downstream 80219 22839821 ~ 22843805 (-)
XLOC_006583 si:ch211-1n9.6 coding downstream 104357 22819485 ~ 22819667 (-)
XLOC_006589 hk1 coding upstream 11278 22972888 ~ 23007813 (-)
XLOC_006590 hkdc1 coding upstream 55888 23017498 ~ 23031803 (-)
XLOC_006591 supv3l1 coding upstream 75975 23037585 ~ 23051766 (-)
XLOC_006592 vps26a coding upstream 96658 23058268 ~ 23067381 (-)
XLOC_006593 srgn coding upstream 108971 23070581 ~ 23074454 (-)
XLOC_006471 BX537274.2 misc downstream 12659119 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 22097799 825904 ~ 826225 (-)
XLOC_006582 CR550304.1 non-coding downstream 139591 22778060 ~ 22784433 (-)
XLOC_006578 BX649385.1 non-coding downstream 728856 22191361 ~ 22195168 (-)
XLOC_006577 NA non-coding downstream 984059 21925701 ~ 21939965 (-)
XLOC_006570 NA non-coding downstream 1776642 21146114 ~ 21147382 (-)
XLOC_006595 NA non-coding upstream 251149 23212759 ~ 23217818 (-)
XLOC_006597 NA non-coding upstream 446419 23408029 ~ 23411631 (-)
XLOC_006602 AL772289.1 non-coding upstream 999682 23961292 ~ 23961406 (-)
XLOC_006605 CR762497.2 non-coding upstream 1165453 24127063 ~ 24127179 (-)
XLOC_006607 CR762497.1 non-coding upstream 1322060 24283670 ~ 24286390 (-)

Expression


Co-expression Network