rcbtb1 (rcbtb1,LOC107676891,LOC107746269,LOC107560987,LOC107718354)


Basic Information

Item Value
gene id rcbtb1
gene name rcbtb1,LOC107676891,LOC107746269,LOC107560987,LOC107718354
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22701331 ~ 22709814 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250116.1
GACAGTCGAGCAGTCATTCACGGAGCCGTAGCAACGGTGATCAGGAAACAAGTGAGCTCGTTTTCTCTTTAGCGTGGACGCGCTCCCGTGGATATACCGCGGCGCCACAGGCTTCTCGGGGAACTGGGGAACTCGCCAACTGCATGGTTTCAAAGTCCCGTAGTCCCTAGgcACGCGCAGCAGGTATCTTCTCATCTCCAAACCCCATCCCCTGCGCTTACAAAGGAGTGTTGCCATGGTGGATGTGAGCAAGTGGCCTCTCTTCACCCTTTTGAGTGCACAGGAGCTCGCCTCCATACGACAGGCATGCATCTTTGGAGCGTCTGCGAATGAGGCCATCTACATCACCCACGATGACGAAGTGTACGTGTTGGGGTTGAACTGCAGTAATTGTCTGGGCACTGGAGACAGTCAGAGCACAATCGTTCCTAAAAAGCTGGACAGTCTGACTGGAAAGAAGCTGGTCAGTTTGAGCTACGGCAGTGGCCCTCATGTTCTTCTGGCCACAGAAGAGGGGGAGTTGTATGCATGGGGGCATAATGGATACAGTCAGCTGGGAAATGGGACGACCAATCAAGGTGTGTCTCCTGTTTTGGTGACAACTAACCTGCAGAGCAAGAAGGTGACCGAGGTGGCCTGTGGTTCTCACCACTCTTTGGCTCTGACCCATGAGGGTGAGGTGTTTTCATGGGGCTATAACAACTGCGGTCAAGTGGGTTCAGGGTCCACCGCCAACCAGCCAACACCCCGCAAGGTGTCCAACTGTCTCCAGAACAAAGTGATGGTCAGTATAGCTTGTGGACAGACTTCATCCATGGCTGTGGCGGATAACGGTGAGgtttACGGCTGGGGTTACAATGGTAACGGCCAGCTAGGCCTGGGCAACAATGGGAACCAGCTGACACCGTGTCGTTTGTTTGCGCTACAAGGCCTGTGTGTGCTGCAGATTGCGTCAGGTTACGCTCACTCTCTAGCACTGACCGATGAGGGCCTACTGTATACGTGGGGGGCCAACACTTACGGCCAGCTGGGCACCGGCAACAAGAGCAACCAGCTCAGCCCTGTACAAGTCATGACTGAGAAAGAAAGGATTGTGGAGATCGCCGCGTGTCACTCCACGCACACCTCTGCGGCGAAGACCCAGAGCGGTCAGGTGTACATGTGGGGGCAGTGCCGAGGACAGCCCATCGTTCTGCCACACCTCACACACTTCAGCAGCACAGACGACGTCTTCGCCTGCTTCGCCTCGCCCTCTGTGATGTGGCGGCTGCTTTCCatggAGCATGATGACTTTCTGACCGTGGCCCAGTCCCTTAAAAAAGAGTTTGACAATCCTGAGACCTCTGACCTTAAGTTCAGCATCGAAGGGAAGTACATCCATGTCCATAAAGCTGTTCTCAAAATCAGGTGTGAGCACTTCAGATCGATGTTTCAGTCACACTGGAATGAGGATATGAAGGAAGTGATAGAGATCGACCAGTTTTCGTATCCGGTGTACCGCTCTTTTCTGGAGTTCCTCTACACAGACAGTGTTGATCTTCCTCCTGAAGATGCCATTGGGTTACTGGACCTGGCAACCTCATACTGTGAAAACAGGCTGAAGAAGTTGTGCCAGCATATCATAAAGAGAGGAATCACGGTGGAGAACgctttctctctgctgtctGCTGCCATCAGATATGATGCTGAGGATCTAGAGGAGTTCTGTTTTAAATTCTGTGTGAACCACTTGACTGAGGTCACGCAGACGGCTGCGTTCTGGCAGATCGACGGCAACATGCTGAAGGAGTTTATCTGCAGAGCCAGCCACTGTGGAGCCTTCAAAAACTGACTCTGACGGCCACCAGATACACACACGCTCGGTGTCTTAGTCAAGGAGCCCATCTGTTACTGCAGCCAGTCCTCCTCGCCGCTAGAGGGCGCTGTGTCTCCAGGCGGTCATAGCACACAGCGCCCCCTGTTGAGCAGGAGAGGAACTCTTTCATAATAGATGACATTCGTGAAGAAGGGTCAGTGTCTGTGTCATGTACATCTGTTACTGAAGATAGTCGGAATGGACTTCATGTTTAAGAGGCATATTGCCTAGTTATTAACAATATCTAGTGCTGCAGATGGGAAgagtgttgtaaaaaaaaatatttgggcCAATCAGAGACAAAATTCAACTGTATTACTTAAACATGCACCACTGAAAAGCAGACAAAGAGACTAAATcagtctttttgtttgtccCTTATACTTTATAGCACGGGTATTATTGAACtaattagatttgtttttcttgcagTGATGCTGTGCATTACAAATTGTtcttattgtattgtattggcTGGGATCTGTTCATGTGCTTTCTATTGGATAAAGACAGCCCCTTATTTTGTTCActtatttttgtctaaatgttATTGACCAAAAGAATTTCTGCTatatggtgtttttgtttttttgcttgatCTGAGTCTTAAAATATaggcctttttttcttttatattattatacgtTAGGAAGACTGTCTTTTATCGCTtatctgctgctgctgttgcactTAACCAGTCTAATGTTTAAGTTAGCTAAAATATAAAGAGTATTATAGTTGCACTAGATGTTTCCTGTGCAGGAGCTGCTCCTATAAGATCACTAGAGGATGTATATGAATTTTTACAGCTGCACCTTTTTAATAGGTGTGAAACACTTAGGGGTAATAATACTAATGCCTAtggtaagtgttttttttgtttttttttgttacatattaaccaactgtatttgttttgttttttccacgtgtatatactgtacagttTTTGCATTAGTTTTGTAAATTAATCTGTGCACATTGTGCGCCACAGATCCTCTTGTaagttataaaaatgaaaaaaataaagcttttcttATAAGTTGCA
>XM_043250122.1
AATGGATACAGTCAGCTGGGAAATGGGACGACCAATCAAGGTGTGTCTCCTGTTTTGGTGACAACTAACCTGCAGAGCAAGAAGGTGACCGAGGTGGCCTGTGGTTCTCACCACTCTTTGGCTCTGACCCATGAGGGTGTTTTCATGGGGCTATAACAACTGCGGTCAAGTGGGTTCAGGGTCCACCGCCAACCAGCCAACACCCCGCAAGGTGTCCAACTGTCTCCAGAACAAAGTGATGGTCAGTATAGCTTGTGGACAGACTTCATCCATGGCTGTGGCGGATAACGGTGAGgtttACGGCTGGGGTTACAATGGTAACGGCCAGCTAGGCCTGGGCAACAATGGGAACCAGCTGACACCGTGTCGTTTGTTTGCGCTACAAGGCCTGTGTGTGCTGCAGATTGCGTCAGGTTACGCTCACTCTCTAGCACTGACCGATGAGGGCCTACTGTATACGTGGGGGGCCAACACTTACGGCCAGCTGGGCACCGGCAACAAGAGCAACCAGCTCAGCCCTGTACAAGTCATGACTGAGAAAGAAAGGATTGTGGAGATCGCCGCGTGTCACTCCACGCACACCTCTGCGGCGAAGACCCAGAGCGGTCAGGTGTACATGTGGGGGCAGTGCCGAGGACAGCCCATCGTTCTGCCACACCTCACACACTTCAGCAGCACAGACGACGTCTTCGCCTGCTTCGCCTCGCCCTCTGTGATGTGGCGGCTGCTTTCCatggAGCATGATGACTTTCTGACCGTGGCCCAGTCCCTTAAAAAAGAGTTTGACAATCCTGAGACCTCTGACCTTAAGTTCAGCATCGAAGGGAAGTACATCCATGTCCATAAAGCTGTTCTCAAAATCAGGTGTGAGCACTTCAGATCGATGTTTCAGTCACACTGGAATGAGGATATGAAGGAAGTGATAGAGATCGACCAGTTTTCGTATCCGGTGTACCGCTCTTTTCTGGAGTTCCTCTACACAGACAGTGTTGATCTTCCTCCTGAAGATGCCATTGGGTTACTGGACCTGGCAACCTCATACTGTGAAAACAGGCTGAAGAAGTTGTGCCAGCATATCATAAAGAGAGGAATCACGGTGGAGAACgctttctctctgctgtctGCTGCCATCAGATATGATGCTGAGGATCTAGAGGAGTTCTGTTTTAAATTCTGTGTGAACCACTTGACTGAGGTCACGCAGACGGCTGCGTTCTGGCAGATCGACGGCAACATGCTGAAGGAGTTTATCTGCAGAGCCAGCCACTGTGGAGCCTTCAAAAACTGACTCTGACGGCCACCAGATACACACACGCTCGGTGTCTTAGTCAAGGAGCCCATCTGTTACTGCAGCCAGTCCTCCTCGCCGCTAGAGGGCGCTGTGTCTCCAGGCGGTCATAGCACACAGCGCCCCCTGTTGAGCAGGAGAGGAACTCTTTCATAATAGATGACATTCGTGAAGAAGGGTCAGTGTCTGTGTCATGTACATCTGTTACTGAAGATAGTCGGAATGGACTTCATGTTTAAGAGGCATATTGCCTAGTTATTAACAATATCTAGTGCTGCAGATGGGAAgagtgttgtaaaaaaaaatatttgggcCAATCAGAGACAAAATTCAACTGTATTACTTAAACATGCACCACTGAAAAGCAGACAAAGAGACTAAATcagtctttttgtttgtccCTTATACTTTATAGCACGGGTATTATTGAACtaattagatttgtttttcttgcagTGATGCTGTGCATTACAAATTGTtcttattgtattgtattggcTGGGATCTGTTCATGTGCTTTCTATTGGATAAAGACAGCCCCTTATTTTGTTCActtatttttgtctaaatgttATTGACCAAAAGAATTTCTGCTatatggtgtttttgtttttttgcttgatCTGAGTCTTAAAATATaggcctttttttcttttatattattatacgtTAGGAAGACTGTCTTTTATCGCTtatctgctgctgctgttgcactTAACCAGTCTAATGTTTAAGTTAGCTAAAATATAAAGAGTATTATAGTTGCACTAGATGTTTCCTGTGCAGGAGCTGCTCCTATAAGATCACTAGAGGATGTATATGAATTTTTACAGCTGCACCTTTTTAATAGGTGTGAAACACTTAGGGGTAATAATACTAATGCCTAtggtaagtgttttttttgtttttttttgttacatattaaccaactgtatttgttttgttttttccacgtgtatatactgtacagttTTTGCATTAGTTTTGTAAATTAATCTGTGCACATTGTGCGCCACAGATCCTCTTGTaagttataaaaatgaaaaaaataaagcttttcttATAAGTTGCA

Function

symbol description
rcbtb1 Acts upstream of or within blood vessel development and retina vasculature development in camera-type eye. Orthologous to human RCBTB1 (RCC1 and BTB domain containing protein 1).

NR:

description
PREDICTED: RCC1 and BTB domain-containing protein 1-like isoform X1

GO: NA

KEGG:

id description
K11494 RCBTB; RCC1 and BTB domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250116.1 True 2903 mRNA 0.47 12 22701331 22709814
XM_043250122.1 False 2360 mRNA 0.45 9 22701331 22707993

Neighbor

gene id symbol gene type direction distance location
cdadc1 LOC107676859,LOC107560988,LOC107718418,LOC107603039,LOC107692129,LOC107746266 coding downstream 784 22694830 ~ 22700547 (-)
pnpla6 pnpla6,LOC107712242,LOC107676850,LOC107718547,LOC107692140 coding downstream 289633 22385513 ~ 22411698 (-)
c1h19orf67 LOC107712227,LOC107676872,LOC107561872 coding downstream 365039 22332974 ~ 22336292 (-)
serhl serhl2,LOC107603032,LOC107718629,LOC107692145,LOC107561867 coding downstream 407970 22288682 ~ 22293361 (-)
LOC122348711 atf7ip,LOC107712238,LOC107676868,LOC107692147 coding downstream 430597 22240381 ~ 22270734 (-)
ebpl ebpl,LOC107718395,LOC107746301 coding upstream 1913 22711727 ~ 22714547 (-)
kpna3 kpna3,LOC107746270,LOC107560982,LOC103046682,LOC107676880 coding upstream 5711 22715525 ~ 22730884 (-)
spryd7a spryd7,spryd7a,LOC107580268,LOC107676840,LOC107746271,LOC107718900 coding upstream 22225 22732039 ~ 22735187 (-)
dleu7 LOC107746276,LOC107560974 coding upstream 86478 22796292 ~ 22798493 (-)
agpat3 agpat3,LOC107746273,LOC107676863,LOC107692122 coding upstream 90765 22800579 ~ 22818012 (-)
G5445 mcf2l,LOC107746267 non-coding downstream 19235 22681649 ~ 22682096 (-)
G5422 NA non-coding downstream 80114 22619809 ~ 22621217 (-)
G5413 NA non-coding downstream 96644 22603757 ~ 22604687 (-)
G5408 NA non-coding downstream 161811 22539269 ~ 22539520 (-)
G5405 NA non-coding downstream 174466 22526641 ~ 22526865 (-)
LOC122341430 NA non-coding upstream 49814 22759628 ~ 22765115 (-)
G5464 NA non-coding upstream 129142 22838956 ~ 22839592 (-)
G5465 LOC107676845,LOC107746297,LOC107560973,LOC107692180,LOC107718848,LOC107603005 non-coding upstream 131988 22841802 ~ 22842024 (-)
G5466 NA non-coding upstream 141198 22851012 ~ 22851348 (-)
LOC122342025 NA non-coding upstream 263865 22973679 ~ 22978634 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other downstream 98683 22539684 ~ 22602648 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other downstream 372402 22259439 ~ 22328929 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other downstream 413810 22272818 ~ 22287521 (-)
LOC122348907 NA other downstream 901587 21761881 ~ 21799744 (-)
G5108 NA other downstream 928569 21724387 ~ 21772762 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other upstream 155017 22864831 ~ 22903414 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other upstream 204086 22913900 ~ 22916405 (-)
gja5b cx41.8,LOC107746285,LOC107676875,LOC107566537,LOC107692115,LOC107746055,LOC107676898,LOC107746286,LOC107566538,LOC107692192,LOC107603053,LOC107746072 other upstream 308424 23018238 ~ 23030310 (-)
LOC122351696 LOC107729347,LOC107583214,LOC107566139,LOC107746059,LOC108434669,LOC106951888,LOC108258286,LOC106586852,LOC105012299 other upstream 1061210 23771024 ~ 23916448 (-)
G5624 LOC107675992,LOC107569046,LOC107729366 other upstream 1323049 24032863 ~ 24172062 (-)

Expression


Co-expression Network