si:dkey-27j5.5 (si:dkey-27j5.5,LOC107707713,LOC107659763,LOC107571882)


Basic Information

Item Value
gene id si:dkey-27j5.5
gene name si:dkey-27j5.5,LOC107707713,LOC107659763,LOC107571882
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27724178 ~ 27726902 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250613.1
TTTCGTTTTTGTAcaacagcatattaaaaacaaactcctacaaaatatttgcaattacGTAGTTGCTTTCATATTTCCTAGTAGGCTTAcctattaaaaaatacaaatatattaattattaatcaccATCGCGGCATTATGTTTGGATCAAAGCATCACGCATGCCATTCatgcaacaacaaacaaacaaagaaacaaaaacaacaacaacaacaacaacatatttttactttatatcttCACGACTGCAGACGAACATTACTTCACTGAGAGACTGTTAACTTAAAGATGCTTCTCTaatgcataaaagtaaaaagccacttgtattgttttgtaaattatttgcaCAAGCATAACATTTCCAACGATGAAGGATTTTTCCTTCTTTGATATACATATCGCATGCATTAATACTAAATGAATATAGGctattgttttttcttctttgccgCTTTCCATTGACATGCGTTGAATTAAAACCTCCTCTGACCCAATTAAAGGCCAGGCAGCTGCGGGCTGTAATCATTACGAGAGATGGCCCATATCACCGCGCACCGCTCCGGGAAACGTCTTGTTCCTCTCGGTACATGGGCGGCGCTCCTGTCAATCACAGCCACGACGCGCGCGCGGGTACATAAGCAGCGCGCCGCGAGCGCACCGCAGTACTTCTCCCGAGCGCATCCGATCGATACAAAGCAGATCCGCCTGCCTTCGATGCGCCCCGTCATGGAGCAGAGCGTCAAAGCGGCCGCAGCCCTGCAGCCCGGCGTCCTGCTCGCCTACAGAAGCGCGACCGGGTTCGGCGTCAGCGCGCTCTCCAAAGCCGGACTGGGGATCCTCAAACTGGCCACGACGCAGCTGAAGCAGCAGGAGCAGAAGGCGCGGGTGGCGCGCGCGTCCAGCCTGGACAAAAGGTCCCCTCTGGACCAGCTCGCCGCGCTGGTCTTGCACGGCAACGCGCGCCTCCAGCCGCTGGCGGGCGAGCCGCACGCCACCAAGCCGCAGAACTGCAGGCGCATCGTGGTGCTCGGCGCGCCGCGCGTCGGGAAGACCTCCATCCTGCGCCGCTTCCTGCGCGACGGCTTCGAGGAGCGATACGAGCCCACGAGCGAGGACTTCCATCGAAAACTCTACCGAATCCGCGGAGAGACGTACCAGATAGACATACTGGACGCGTCCGGGGAGAGGAGCTTCCCCGCCAAGAGGAGGCTGTCCATCCTCACCGGAGACATATTCCTGCTGGTCTTCAGCGTCGACGACCGAGGCTCGTTCGAGGAAGCGCGCGCTCTTCACGCCGAGATCCTCGCGGCCAAGACGGCGCTGCACCGATCCAAGCAGAAGGCGCGCGCGCCCACGGTGGTGTGCGCGAACAAGGTGGACCTGCCCTCGGAGCGGCGCGCGGTGTCGCGGACAGAGGTGCTGCGCGCGCTGGGCCCCGGCTGCGCCCTGTTCGAGACCTCCGCCAAAGACTGCGTCAATCTGGAGCAGGTGTTCGAGGCGCTGGCGCGGCGCGGCGGGCTCCCCCTCGAGACCGGGCCCTCGCAGCACCGCAAAGTGTCCATCCGCTCGTACCAGGCGCTGCGGGCGGCGGCGTGCGACGCTCCGTGCGGCGCGCTCTTCCCGCTGGCCCGCAGACCGAGCTTCGGCACGGACCTGCGGCTCGTCCTCGGGCCCAAGGCCGGGAGAAAACAGAGCAAAGCGCCGGACAGGTGTCAGATCCAGTGAAGCCAAGCAGACTCTCAAAGAGCGTTTCGTGCTTTCCATCTTCTGGAGATGTTCAGAATCATCTGGAGAGGAAGAGCAGTCATAAGCAGCATGCAGCCAACAAAACGCGTTATTCCTTGAAGATATTATAAGgaaaacttttcattttggcCACATTTcgcttattttttaattttgttatttatttcgTGTTTTTCCACCCAGGTTTTCAAACAGCCGTAATCTAACCAACCCTACCGAAAGCTTATTTATCAATTCATCATTTCACGAATGTACTCTTATGACTGCTTTTCCGGTGCATTTTAAGAAACAGGCCATAAAACTTCATTCTCACCGATTCGTTTCGATTCTACTCGGTGCTCGAGGAACAGAGAAGCGTCTGGGTAAGCTTCAGGCCGGTGGAGACCGAATGAAACTACACCGTGATGAAGCCCGAGACGTGAAGAACCGACTCGTTTCCGTCTCTCCTTTCAGATGAAGACCCGCTGAGCTCGTGAGATGCTGTGTATGACACGTGTGAAGCTTTGAAATAAAACGCTTTGGTAGGAA

Function

symbol description
si:dkey-27j5.5 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane.

NR:

description
PREDICTED: GTP-binding protein Rhes-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250613.1 True 2274 mRNA 0.54 2 27724178 27726902

Neighbor

gene id symbol gene type direction distance location
gcgrb gcgrb,LOC107747136,LOC107572112,LOC107698219,LOC107712052,LOC107569281 coding downstream 90404 27604178 ~ 27633774 (-)
LOC122344130 NA coding downstream 282416 27438436 ~ 27441762 (-)
LOC122344204 NA coding downstream 285899 27431730 ~ 27438279 (-)
LOC122349201 NA coding downstream 298031 27422954 ~ 27426147 (-)
LOC122344221 LOC107574524,LOC107578363,LOC107574523,LOC107576205 coding downstream 302456 27417953 ~ 27421722 (-)
LOC122352823 NA coding upstream 32316 27759218 ~ 27765006 (-)
LOC122352815 NA coding upstream 67568 27794470 ~ 27803049 (-)
LOC122349272 NA coding upstream 160917 27887819 ~ 27890576 (-)
LOC122349282 NA coding upstream 213841 27940743 ~ 27942269 (-)
LOC122352989 NA coding upstream 248378 27975280 ~ 27978821 (-)
G7014 NA non-coding downstream 75892 27647927 ~ 27648286 (-)
G7012 NA non-coding downstream 77453 27646023 ~ 27646725 (-)
G7010 NA non-coding downstream 128334 27593721 ~ 27595844 (-)
G7009 NA non-coding downstream 131728 27591373 ~ 27592450 (-)
G7000 NA non-coding downstream 225435 27497894 ~ 27498743 (-)
G7106 NA non-coding upstream 9676 27736578 ~ 27745295 (-)
G7125 NA non-coding upstream 54211 27781113 ~ 28001479 (-)
G7128 NA non-coding upstream 63899 27790801 ~ 27972210 (-)
G7138 NA non-coding upstream 116776 27843678 ~ 28010247 (-)
G7139 LOC107737592,LOC107703675,LOC107758473,LOC107575341,LOC107574264 non-coding upstream 120813 27847715 ~ 27848178 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other downstream 339099 27375317 ~ 27385079 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other downstream 469111 27240324 ~ 27255067 (-)
LOC122344379 NA other downstream 521550 27196238 ~ 27202628 (-)
LOC122349164 NA other downstream 731596 26984544 ~ 26992582 (-)
si:ch211-286b5.5 NA other downstream 804144 26917669 ~ 26920034 (-)
G7105 epn3,epn3b,LOC107707724,LOC107571871,LOC107703747,LOC107745640,LOC107574648,LOC108411852 other upstream 27880 27754782 ~ 27939452 (-)
LOC122349330 LOC107571875,LOC107574524,LOC107703776,LOC107573813,LOC107707718,LOC107732931,LOC107703675,LOC107703672 other upstream 164999 27891901 ~ 28076645 (-)
nxnl1 nxnl1,LOC107748002,LOC107713785,LOC107571423,LOC107659782,LOC107690637 other upstream 493997 28220899 ~ 28223247 (-)
G7475 NA other upstream 517226 28244128 ~ 28248523 (-)
G7508 LOC107739967,LOC107747700,LOC107716241,LOC107572978 other upstream 664137 28391039 ~ 28392053 (-)

Expression


Co-expression Network