tmod1 (tmod1,LOC107665961,LOC107692607,LOC102782831)


Basic Information

Item Value
gene id tmod1
gene name tmod1,LOC107665961,LOC107692607,LOC102782831
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7749596 ~ 7761949 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250953.1
GCCATGCTCTGCGGTTCTCCGGGTGTGTGGAAACTCTTTGATCGCCACCGACTACCGGACTTGCTGAAAGAAGGCTGTAGCAGTAACTGCTTTTAATATTTGGACTTTTCTCCGCCGTGTCAAGCTCTGTACTTCTATGAACCTTGGACTTGAGAATACATTGCTTGAGGCAGCAGCACATTTCTGTGAATTAGCGGCTCCGAAAAGAAACCATATCTGGTCAAAGTATTCAGCTGTCACATGCGCTATATATAGTGTGGGATAAGCGCTGCCTGAAGTCTTGTGCTTGGGGGGGGTTGAGTGTTCCTGCCTTTTTTTAGTTTCTTCCATCCCCTTCCCGCATTTTATCTTATTCGCCATGTTCCGTAAAGAGATGGATAAGTACCGGGATGTGGATGAGGATGAGCTCTTGCAGAAGCTCAGTGAAGAAGAGCTCAGGAGACTAGAAGATGAACTCGAAGAGCTTGATCCTGATAACGCACTATTGCCAGCAGGATTCAGACAGAGGGATCAGACCAAGAAAGCTCCGACTGGAACTTTTCAGAGAGATAACCTCCTCGCTCACCTGGAGAAACAGGCCAAAGAGCATCCAGACCGAGATGATCTTGTTCCCTACACTGGCGAGAAAAGAGgaAAAGTGTGGGTGCCTAAGTCCAAAGTCGTCGACCCTATCCTGGAGGATGTTACTCTGGAGCCTGAACTAGAAGAAGCGCTATCTAGTGCTACTGACGCAGAATTGTGCGATATAGCAGCCATTTTGGGCATGCACACACTGATGAGTAATCAGCAGTATTATGAAGCACTGGCCAGCAGTACTATCGTCAACAAACAGGGCTTGAACAGTGTAATCCAGTGTACTCAGTATAAGCCAGTGCCAGATGAACAGCCCAATGACACAGATGTAGAGGAAACACTACAGAGAGTCAAGAGAAATGATCCAGATCTTGTTGAGGTCAACCTAAACAACATCAAGAATATTCCAATCCCAACTCTGAAAGCGTATGCTGAAGCTCTCAAAGAGAACAATGTTGTGGAACGCCTGAGCATCGTTGGCACCAGAAGTAATGATCCTGTGGCCTTTGCACTAGCAGACATGCTGAGAGTGAACACCACTCTGAAGACTCTAAACGTTGAGTCAAACTTCATTACTGGGGCTGGAATTCTGGCACTCGTGGAGTCCTTAAAGAGCAACACTACACTGCTGGAGCTAAAGATTGACAACCagAGCCAACCTTTAGGTAATAAGGTTGAGATGGAGATAGCTAACATTTTGGAGAAGAACACTACTCTGCTGAAGTTTGGATACCACTTCACCCAGCAGGGCCCACGCTTGCGTGGATCTAATGCCATGATGAACAACAATGACCTGgCACGTGTAGTTCGGTCGGACTCAGATGGCGCGATCACATTCACTCTGTCAGTCCCAGAGCTGGAAAGAGCCTTCTGTAAAAAGTTCAAGTTCACAACGAAACCCAAtaaGAAAGAGAAGGCTTGAAGGAGGACCCATCTTTCCTAAATGTCGGACAAACGTGTAGCGGCTTCAGGAACCCTCTATGGCCTGGGACCTGCATCACACCCCATCTCATCCCATATCCTCCCTTCATGTCTGTCCCTTTCGCATATAACCCTCAAAATCATCTAAAGGAAACATCACAGTCAGAAAGGTACCACCCTCTGTTTACCAGACACATAGTTACTCATGGCggagtgttttaaaaatgtgtaaactaCCTGCCATAACATTAGCAAGGAAAAATCACCTACGTGTGTTGATGGAAGCAGTAAAGATGAAAATGACCTTCAATTTATCACAATGTTCTCAGTTGACATAATCCTCACGTTGTAAACAGTTTGACCTGTGTTTGGATGCGCACCAAGAGCATCAAACTTCAAACTTGACTGATTGTAGCTGTGGTTTTGCCTTGTCCGGGCCAGTTTGAGTCTCACTGTAGTGGTAGTTCTCACACACATCGCGTAGAAGCatgtactgtgtgttttttttttgggatgtgCTATAATCTTGACCTGTTCTTCTGTGTGTAAAAACTGGtacattttttgcaatgcaaattCGTTGTTGGCAAGTCAGTAGACTGTGGTTTCTGTTACTTTTCTATGCAGAAAACAGCAATGAGATTGCATTGCTGGTGCATAATTTTAGAAACTCGCATCGCCAACAACtcgcatttaaaatgaatacaaatcaCTACAAAATCTAAGCTCTGTGTATTGGCACCGCTCCagtatatttatgaaattatttaaatataaataataaataaaatatataaagtattttatattctatGTTTGATGAGggaaaaatctcttttttgtgtttaaggCAAGTTTAGAGCAAGCAGTGATATTTCTCATATTATACTAATGGTCTCTCTCTACGATAACCACTTATTAATGATTGTGATTGATGTGCATACAGTGTTCTCTATAGTCTTCCTcaataaatgcctttttttttacttttaagcaaGAATCGTAACACACAATAGAATACTCATCATAAAATTAGATGGCTCATGAAGTCAATTCCAGGTTATATTTCACcacccaaaaaataataattaataaatcagaagaaaaaattCGCATACATCTGTTTTTAGTTGCAAATGTGAATGAAATTGTTCATTGCGCTCTGTTGAGATCTTGTACAGAAACTTATACTTAAAATTGCACTGAATGATTTTGCCAATAGTTATTTTGCCGAATATAATTTCTCTTTGATTCGTCTTGATCCAGACCCCTGGTCATTTCTCTGCGTTTTTCCTGAAACTGGGCATCATTTGCAATTTGTTGTGTGCTGTGATTTAGCAggatgggtgtgtgtgtgtgtgtgtgtgtctcagataTTTTTTGTCCGTGATCAGGCCTTGCTCTCTTCACACTCTCCCAGCACAATAAAAGTCggtatgttttattattgtaaacatttttctaCTGTTTAAAGGACAGAGCATTTATAGGACTTTTGAGGTCATTGTCTTgttcaaaaaccaaaaagggAAAATTCACTGTTGATTTTCTTGTCCTGTGTTTGGACGCAGGCCCATAATCATTGCCATAGAGTGCCTGGGCTGGTGCACACATGTATATTTTGTTAGTGCACCTTACTGTATGTGATTTAAGGAATTAATAAAGACTGAAAAGGTTGTGTGGAAATGTCagcagaaacttttttttaaccagctTCGCATCAGGaacactatttaaatatttatatgcagaagattaaaatgttttagaatgaCCAACAGTGCCACTTTGTGGTCTGGTTTATTAATAGTGTCTGCGTAATAGCAATAATATGCAGGCTTTATATGTGTAACATAATTTGAGGCTTTGTACTTTCTTTAGAAGTTTAATctacaatgtaaatgtttaatatacactatatatttgAAGAGGCTATGACAGTTAATggttaaagtaaaaaactaaacaaaactgatttttagtTTACTGTAGTGAC
>XM_043250961.1
GCCATGCTCTGCGGTTCTCCGGGTGTGTGGAAACTCTTTGATCGCCACCGACTACCGGACTTGCTGAAAGAAGGCTGTAGCAGTAACTGCTTTTAATATTTGGACTTTTCTCCGCCGTGTCAAGCTCTGTACTTCTATGAACCTTGGACTTGAGAATACATTGCTTGAGGCAGCAGCACATTTCTGTGAATTAGCGGCTCCGAAAAGAAACCATATCTGGTCAAAGTATTCAGCTGTCACATGCGCTATATATAGTGTGGGATAAGCGCTGCCTGAAGTCTTGTGCTTGGGGGGGGTTGAGTGTTCCTGCCTTTTTTTAGTTTCTTCCATCCCCTTCCCGCATTTTATCTTATTCGCCATGTTCCGTAAAGAGATGGATAAGTACCGGGATGTGGATGAGGATGAGCTCTTGCAGAAGCTCAGTGAAGAAGAGCTCAGGAGACTAGAAGATGAACTCGAAGAGCTTGATCCTGATAACGCACTATTGCCAGCAGGATTCAGACAGAGGGATCAGACCAAGAAAGCTCCGACTGGAACTTTTCAGAGAGATAACCTCCTCGCTCACCTGGAGAAACAGGCCAAAGAGCATCCAGACCGAGATGATCTTGTTCCCTACACTGGCGAGAAAAGAGgaAAAGTGTGGGTGCCTAAGTCCAAAGTCGTCGACCCTATCCTGGAGGATGTTACTCTGGAGCCTGAACTAGAAGAAGCGCTATCTAGTGCTACTGACGCAGAATTGTGCGATATAGCAGCCATTTTGGGCATGCACACACTGATGAGTAATCAGCAGTATTATGAAGCACTGGCCAGCAGTACTATCGTCAACAAACAGGGCTTGAACAGTGTAATCCAGTGTACTCAGTATAAGCCAGTGCCAGATGAACAGCCCAATGACACAGATGTAGAGGAAACACTACAGAGAGTCAAGAGAAATGATCCAGATCTTGTTGAGGTCAACCTAAACAACATCAAGAATATTCCAATCCCAACTCTGAAAGCGTATGCTGAAGCTCTCAAAGAGAACAATGTTGTGGAACGCCTGAGCATCGTTGGCACCAGAAGTAATGATCCTGTGGCCTTTGCACTAGCAGACATGCTGAGAGTGAACACCACTCTGAAGACTCTAAACGTTGAGTCAAACTTCATTACTGGGGCTGGAATTCTGGCACTCGTGGAGTCCTTAAAGAGCAACACTACACTGCTGGAGCTAAAGATTGACAACCagAGCCAACCTTTAGGTAATAAGGTTGAGATGGAGATAGCTAACATTTTGGAGAAGAACACTACTCTGCTGAAGTTTGGATACCACTTCACCCAGCAGGGCCCACGCTTGCGTGGATCTAATGCCATGATGAACAACAATGACCTGgtaaGAAAGAGAAGGCTTGAAGGAGGACCCATCTTTCCTAAATGTCGGACAAACGTGTAGCGGCTTCAGGAACCCTCTATGGCCTGGGACCTGCATCACACCCCATCTCATCCCATATCCTCCCTTCATGTCTGTCCCTTTCGCATATAACCCTCAAAATCATCTAAAGGAAACATCACAGTCAGAAAGGTACCACCCTCTGTTTACCAGACACATAGTTACTCATGGCggagtgttttaaaaatgtgtaaactaCCTGCCATAACATTAGCAAGGAAAAATCACCTACGTGTGTTGATGGAAGCAGTAAAGATGAAAATGACCTTCAATTTATCACAATGTTCTCAGTTGACATAATCCTCACGTTGTAAACAGTTTGACCTGTGTTTGGATGCGCACCAAGAGCATCAAACTTCAAACTTGACTGATTGTAGCTGTGGTTTTGCCTTGTCCGGGCCAGTTTGAGTCTCACTGTAGTGGTAGTTCTCACACACATCGCGTAGAAGCatgtactgtgtgttttttttttgggatgtgCTATAATCTTGACCTGTTCTTCTGTGTGTAAAAACTGGtacattttttgcaatgcaaattCGTTGTTGGCAAGTCAGTAGACTGTGGTTTCTGTTACTTTTCTATGCAGAAAACAGCAATGAGATTGCATTGCTGGTGCATAATTTTAGAAACTCGCATCGCCAACAACtcgcatttaaaatgaatacaaatcaCTACAAAATCTAAGCTCTGTGTATTGGCACCGCTCCagtatatttatgaaattatttaaatataaataataaataaaatatataaagtattttatattctatGTTTGATGAGggaaaaatctcttttttgtgtttaaggCAAGTTTAGAGCAAGCAGTGATATTTCTCATATTATACTAATGGTCTCTCTCTACGATAACCACTTATTAATGATTGTGATTGATGTGCATACAGTGTTCTCTATAGTCTTCCTcaataaatgcctttttttttacttttaagcaaGAATCGTAACACACAATAGAATACTCATCATAAAATTAGATGGCTCATGAAGTCAATTCCAGGTTATATTTCACcacccaaaaaataataattaataaatcagaagaaaaaattCGCATACATCTGTTTTTAGTTGCAAATGTGAATGAAATTGTTCATTGCGCTCTGTTGAGATCTTGTACAGAAACTTATACTTAAAATTGCACTGAATGATTTTGCCAATAGTTATTTTGCCGAATATAATTTCTCTTTGATTCGTCTTGATCCAGACCCCTGGTCATTTCTCTGCGTTTTTCCTGAAACTGGGCATCATTTGCAATTTGTTGTGTGCTGTGATTTAGCAggatgggtgtgtgtgtgtgtgtgtgtgtctcagataTTTTTTGTCCGTGATCAGGCCTTGCTCTCTTCACACTCTCCCAGCACAATAAAAGTCggtatgttttattattgtaaacatttttctaCTGTTTAAAGGACAGAGCATTTATAGGACTTTTGAGGTCATTGTCTTgttcaaaaaccaaaaagggAAAATTCACTGTTGATTTTCTTGTCCTGTGTTTGGACGCAGGCCCATAATCATTGCCATAGAGTGCCTGGGCTGGTGCACACATGTATATTTTGTTAGTGCACCTTACTGTATGTGATTTAAGGAATTAATAAAGACTGAAAAGGTTGTGTGGAAATGTCagcagaaacttttttttaaccagctTCGCATCAGGaacactatttaaatatttatatgcagaagattaaaatgttttagaatgaCCAACAGTGCCACTTTGTGGTCTGGTTTATTAATAGTGTCTGCGTAATAGCAATAATATGCAGGCTTTATATGTGTAACATAATTTGAGGCTTTGTACTTTCTTTAGAAGTTTAATctacaatgtaaatgtttaatatacactatatatttgAAGAGGCTATGACAGTTAATggttaaagtaaaaaactaaacaaaactgatttttagtTTACTGTAGTGA

Function

symbol description
tmod1 Predicted to enable tropomyosin binding activity. Predicted to be involved in actin filament organization; muscle contraction; and myofibril assembly. Predicted to act upstream of or within pointed-end actin filament capping. Predicted to be active in striated muscle thin filament. Is expressed in muscle. Orthologous to human TMOD1 (tropomodulin 1).

NR:

description
PREDICTED: tropomodulin-1 isoform X1

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K10370 TMOD; tropomodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250953.1 True 3490 mRNA 0.41 11 7749596 7761949
XM_043250961.1 False 3383 mRNA 0.40 10 7749596 7761948

Neighbor

gene id symbol gene type direction distance location
tdrd7a LOC107723197,LOC107692608,LOC107564078,LOC107557954,LOC107665979,LOC107758895 coding upstream 147 7738766 ~ 7749449 (+)
stra6l stra6l,LOC107564087,LOC107665941,LOC107692609,LOC107758896,LOC107557952 coding upstream 10978 7731788 ~ 7738618 (+)
LOC122343081 LOC107723175,LOC107692611,LOC107565010,LOC107665966,LOC107758893,LOC107557956 coding upstream 45465 7696411 ~ 7704131 (+)
xpa xpa,LOC107758894,LOC107565010,LOC107692611,LOC107557957,LOC107723178 coding upstream 58669 7687375 ~ 7690927 (+)
saraf LOC107758892,LOC107557959,LOC107665975,LOC107692614 coding upstream 64995 7680870 ~ 7684601 (+)
gne LOC107665959,LOC107723184,LOC107692604,LOC107758846 coding downstream 12862 7774811 ~ 7792042 (+)
nansa nansa,LOC107723182,LOC107758866,LOC107692601,LOC107665955,LOC107557947 coding downstream 30699 7792648 ~ 7796560 (+)
clta clta,LOC107723183,LOC107564055,LOC107692603,LOC107557948,LOC107758902 coding downstream 35207 7797156 ~ 7804962 (+)
c1h4orf33 LOC107557949,LOC107564032,LOC107758903,LOC107692602,LOC107723188,LOC107665957 coding downstream 56474 7818423 ~ 7821348 (+)
noctb LOC107742507,LOC107692596,LOC107702303,LOC107714224 coding downstream 701882 8463831 ~ 8471506 (+)
G1732 NA non-coding upstream 41465 7706885 ~ 7708131 (+)
G1698 NA non-coding upstream 100972 7647889 ~ 7648624 (+)
G1697 NA non-coding upstream 121285 7624948 ~ 7628311 (+)
G1706 NA non-coding upstream 143096 7598267 ~ 7606500 (+)
G1677 NA non-coding upstream 167506 7513555 ~ 7582090 (+)
G1751 NA non-coding downstream 43756 7805705 ~ 7806252 (+)
G1752 NA non-coding downstream 45402 7807351 ~ 7808014 (+)
G1750 LOC107692600 non-coding downstream 46354 7808303 ~ 7809221 (+)
G1753 NA non-coding downstream 49034 7810983 ~ 7811354 (+)
G1754 NA non-coding downstream 50204 7812153 ~ 7813651 (+)
spink4 LOC107758865,LOC107692710,LOC107723196,LOC107565379 other upstream 28171 7720265 ~ 7721425 (+)
mpc2a LOC107564279,LOC107692629,LOC107665976,LOC108258922 other upstream 597376 7146873 ~ 7152220 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other upstream 889326 6846500 ~ 6860270 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other upstream 904048 6711635 ~ 6845548 (+)
pcdh10a pcdh10a,LOC107751533,LOC107557555,LOC107746446 other downstream 192762 7954711 ~ 7985615 (+)
cxcl8a LOC107714205,LOC107702289,LOC107562973,LOC107692705,LOC107565350 other downstream 844876 8606825 ~ 8607785 (+)
ppp2r2ca ppp2r2ca,LOC107692591,LOC107563918,LOC107742501,LOC108241547,LOC106531115 other downstream 861209 8623158 ~ 8634399 (+)
stim2a stim2a,LOC107742493,LOC107563819,LOC107656659,LOC107702263,LOC107714208,LOC107562986,LOC108441330 other downstream 938491 8700440 ~ 8705873 (+)
LOC122342651 LOC107702307,LOC103385245,LOC102791586,LOC107103578,LOC107559840 other downstream 1000190 8762139 ~ 8780164 (+)

Expression


Co-expression Network