aptx (aptx,LOC107757069,LOC107746089)


Basic Information

Item Value
gene id aptx
gene name aptx,LOC107757069,LOC107746089
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 25809879 ~ 25813849 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251139.1
GCATGCTCTGTGTTTGACCGGAAGGTGGCAGTGCACGCGCTTCCGCTTGTTGGTCGACGTCCACGAAGAAGATCGCCGTCACGCGCCGCAGCGTTCAGCTCGCGGTGTTTTGTTTTCAACTACAACGCGTTCTTCTGTAGATACAATACAACGCGACAGGGGAGATGCCTGCGTGCTTACTAGTAAGTGAAGATGAGTCACGTGCACCCATCCAGCTTCATCACCAGCAGTCCGTGACTCTGGGTCGAGGGCCACAAACTAAGATAAAAGACAAGAAGTGCTCAAGAGAACAAGtgGAATTGAGAGCTGATTGCAACAGAGGCTTTGTCATTGTGAAACAGtTGGGTGCCAATCCTACCAACGTGGACAATGTTGTTGTGGGCAAAGGCAATCAGGTGACCGTGAAGCCGGGCCAGAGACTTTACATGGTCAATCAGCGGTATCCTTACACGCTGAGGTTCACCGAGGACACATCCACACCCAGATCTGCCACAGAGCGGAGCAAACCTTCGAAAAGAGCCCGTCAGATGAGCTCCGAGGGGAACGGAGAGCAGATCGAGAGCCCTGCAGACACAACATCGGAGCGTCACAGAACGCCCGACGATTCACCGCCGCCAAAGAAGACATCTGATAAACCTGAATCTGCAGGCCACTGGAGCCAAGGCCTTAAAGCGTCCATGCAGGACCCTAAGATGCAGGTGTATAAAGATGACAGGGTTGTGGTCATCAAGGACAAGTACCCGAAGGCGCGGTACCATTGGCTGGTGCTGCCGTGGGACTCCATCTCCAGTCTGAAGGCTCTGCGCTCGGAGCACGTGGAGCTGCTGGAACACATGCAGCGCGTGGGAGAGCGGGTCCTGCAGCAGTGCCCCGACGCACGCAGCCTACGCTTCCGGCTCGGATATCACGCCGTCCCCAGCATGAGTCACGTCCACCTGCACGTAATCAGCCAAGACTTTGACTCGCCGTGTTTGAAGAACAAGAAACACTGGAACTCCTTCACCACCGACTACTTCGTGGAGTCTCGAGATGTCATTTCGATGCTGGAGAAGGATGGGAAAGTGACGGTGAAGGAAGGCACCAGTGAACTGCTGAAGCTGCCTCTGCGCTGTCACTCGTGTGGTAAAGAGCAGCCCACAATACCTAAACTAAAAGAACACCTCAAAACCCACCTGCCGCCTTAAACCTgttaaaaaggtcaaattacaatacattttgttacCCTTCAATAAATTCAGTGTGTTCAGGA
>XM_043251149.1
ACGTGCACCCATCCAGCTTCATCACCAGCAGTCCGTGACTCTGGGTCGAGGGCCACAAACTAAGATAAAAGACAAGAAGTGCTCAAGAGAACAAGtgGAATTGAGAGCTGATTGCAACAGAGGCTTTGTCATTGTGAAACAGtTGGGTGCCAATCCTACCAACGTGGACAATGTTGTTGTGGGCAAAGGCAATCAGGTTACTGGTCTTAACATCCTACAAACCGCATGTCGCCCACCTCTACAATCAGGTGACCGTGAAGCCGGGCCAGAGACTTTACATGGTCAATCAGCGGTATCCTTACACGCTGAGGTTCACCGAGGACACATCCACACCCAGATCTGCCACAGAGCGGAGCAAACCTTCGAAAAGAGCCCGTCAGATGAGCTCCGAGGGGAACGGAGAGCAGATCGAGAGCCCTGCAGACACAACATCGGAGCGTCACAGAACGCCCGACGATTCACCGCCGCCAAAGAAGACATCTGATAAACCTGAATCTGCAGGCCACTGGAGCCAAGGCCTTAAAGCGTCCATGCAGGACCCTAAGATGCAGGTGTATAAAGATGACAGGGTTGTGGTCATCAAGGACAAGTACCCGAAGGCGCGGTACCATTGGCTGGTGCTGCCGTGGGACTCCATCTCCAGTCTGAAGGCTCTGCGCTCGGAGCACGTGGAGCTGCTGGAACACATGCAGCGCGTGGGAGAGCGGGTCCTGCAGCAGTGCCCCGACGCACGCAGCCTACGCTTCCGGCTCGGATATCACGCCGTCCCCAGCATGAGTCACGTCCACCTGCACGTAATCAGCCAAGACTTTGACTCGCCGTGTTTGAAGAACAAGAAACACTGGAACTCCTTCACCACCGACTACTTCGTGGAGTCTCGAGATGTCATTTCGATGCTGGAGAAGGATGGGAAAGTGACGGTGAAGGAAGGCACCAGTGAACTGCTGAAGCTGCCTCTGCGCTGTCACTCGTGTGGTAAAGAGCAGCCCACAATACCTAAACTAAAAGAACACCTCAAAACCCACCTGCCGCCTTAAACCTgttaaaaaggtcaaattacaatacattttgttacCCTTCAATAAATTCAGTGTGTTCAGGA

Function

symbol description
aptx Predicted to enable DNA 5'-adenosine monophosphate hydrolase activity and nucleic acid binding activity. Predicted to be involved in double-strand break repair and single strand break repair. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleolus and nucleoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in ataxia with oculomotor apraxia type 1 and olivopontocerebellar atrophy. Orthologous to human APTX (aprataxin).

NR:

description
aprataxin

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10863 APTX; aprataxin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251139.1 True 1249 mRNA 0.53 9 25809879 25813849
XM_043251149.1 False 1102 mRNA 0.53 8 25809879 25813565

Neighbor

gene id symbol gene type direction distance location
LOC122353214 vps54,LOC107700845,LOC107598476,LOC107709616 coding downstream 82341 25716158 ~ 25727538 (-)
LOC122353232 rnf150a,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC107729769,LOC107700883 coding downstream 95905 25706824 ~ 25713974 (-)
LOC122349099 LOC107700791,LOC107729560,LOC107598497,LOC107729568,LOC107706374,LOC107595808,LOC107687795 coding downstream 108595 25687797 ~ 25701284 (-)
junba junba,LOC107594404,LOC107757044,LOC107747424,LOC107684248,LOC107675464 coding downstream 231080 25577222 ~ 25578799 (-)
rnaseh2a rnaseh2a,LOC107747423,LOC107594406,LOC107676270,LOC107757040,LOC107583201 coding downstream 240968 25564387 ~ 25568911 (-)
il15 LOC107730128 coding upstream 255327 26069176 ~ 26076862 (-)
znf330 znf330,LOC107746098 coding upstream 263416 26077265 ~ 26083184 (-)
elmod2 elmod2 coding upstream 321857 26135706 ~ 26141269 (-)
zgc:66455 NA coding upstream 327935 26141784 ~ 26147822 (-)
b3gnt2a LOC107703838,LOC107746084,LOC107729991,LOC107576349,LOC107598544 coding upstream 334083 26147932 ~ 26155748 (-)
G6594 NA non-coding downstream 10606 25768907 ~ 25799273 (-)
G6223 NA non-coding downstream 72567 25736797 ~ 25737312 (-)
G6201 NA non-coding downstream 188134 25621434 ~ 25621745 (-)
G6200 NA non-coding downstream 189375 25620246 ~ 25620504 (-)
G6165 NA non-coding downstream 305025 25503940 ~ 25504854 (-)
G6634 NA non-coding upstream 22089 25835938 ~ 25844994 (-)
G6636 NA non-coding upstream 25002 25838851 ~ 25846530 (-)
G6650 NA non-coding upstream 104721 25918570 ~ 25918785 (-)
G6652 NA non-coding upstream 124572 25938421 ~ 25938851 (-)
G6687 NA non-coding upstream 250710 26064559 ~ 26066186 (-)
LOC122353196 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 94175 25714102 ~ 25715704 (-)
prokr1a prokr1a,LOC107594458,LOC107676304,LOC107747445,LOC107757000,LOC108441199 other downstream 252897 25547725 ~ 25556982 (-)
G6135 ndufaf5,LOC107675590,LOC107594415 other downstream 407524 25400384 ~ 25402355 (-)
G6134 ndufaf5,LOC107594462,LOC107594415,LOC107583196,LOC107684300 other downstream 409862 25398491 ~ 25400017 (-)
G6124 actr2,LOC108423375 other downstream 501908 25304597 ~ 25307971 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other upstream 17475 25831324 ~ 25863787 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other upstream 316939 26130788 ~ 26135486 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other upstream 603010 26416859 ~ 26417897 (-)
LOC122353745 slc9a3r2,LOC107729606 other upstream 640401 26454250 ~ 26523402 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other upstream 988061 26801910 ~ 26802954 (-)

Expression


Co-expression Network