LOC122353214 (vps54,LOC107700845,LOC107598476,LOC107709616)


Basic Information

Item Value
gene id LOC122353214
gene name vps54,LOC107700845,LOC107598476,LOC107709616
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 25716158 ~ 25727538 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251183.1
CTGAGCCCTGTCGTGGTCTGTACAGGTGAGGGTCGTGCCCTCTGTGACGGGCCGTCTGTGGTGGCCGACCAGCACCGCTGGACTGTGTTTAACTCTAAGGTCAACCTCCCGGCGGCCCTCAACGATCCCAGGCTGGCCAAGAGAGAGTCAGACTTCTTCACGAAGACGTGGGGCCTGGACTTCACCGAGACCGACGTCATGCCCTCGTTCTACCTGCCCAGCATCAGCCGAGATCACTTCAGCTCGTACCTGCAGGAGACGGCTCAGAGGGAGAAGATTCACGAGCGCTTCAAGAACGTTTGCCCGAGCAAAGACGATCTGTCCGTGCCCACCATCACCAACAATCATGATAAAGCCAGAGCTGAACTGGAGCAGGTGCCCAAGATCTTCATGAAGCCTGAGTTTGTACTGAATGATCCAGCCACGTTTAACGCTGTGTTGCCGTGGTCTCACTTCAGTGTTGCCGGGGGCAAGAACAGCCGAGATGTTGCATCGTCACGGTTACTACAGGAAAAGTTGAGTCACTATCTGGACGTGGTGGAGGTGAGCATCGCTCGGCAGATCTCTCTCCGCTCCGAGGCCTTTTTCCACGCCATGTCGTCGCAGCATGAGCTCCAGGACCGTCTGCGAGAGACGGCGGAGGCCGTGGCCAAGCTCCGCGCTCGCACCGCCGCCATCGACCGTGTGATGTGCCGCGGGCCGCTGCGAGCGCTGAGGGACGCACTCACACGAAACAACTGCATCAAACTACACAACAAACTCAAGCTGATGGCTGCCGTGCACCAGACGCAGCCCACGGTGCAGCTGCTGCTCTCCACCTCAGAGTTCGTGGGAGCGCTGGAGCTCATCGCCACCACCAAAGAAGTGCTGCAGCAGGAACTGCAGGGCATTCACAGCTTCAGACATCTGGGCTCTCAGCTCTGTGAGATGGAGAGGTTGATCGATAAGATGATGGTGGCTGATTTCTCCACGTATGCCCAGAGCGATCTCAGCCGACCCTTCGAGGAGGACAGCCAGGTCCTGGAGAAGGTCAATTGTGaatccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtNGTCTGTTGAGGCAGAGGAAGCTGGATTTCCTGGACATCTACAGCGAAGAGATGGTGCGCGCCGCCAAGAACGTGGTTCGACAGTGTGTCGTGAAGTCTGTGTCGCAGATCAGTGAGATCGACGCCGACGCTGTCAAtagGTTTCACGAGCAGATGCGCCTGATGACGTTTAATCAGTGGTTTGATCTGCTGCTGGATATTTTTGAACACTTCATCCTGTTCCTCAAGAGGATCAAGGCTACGCTTAGCGTCATCCGCAACGTGGTGCTAGAGGTGCTGGACAGCAGCCAGAGGAGTCGCCTGGCGGACGTTTCCACGGCAACCGATCATGCTGACGGCAGGACCAATGAGgacgaagaggaggaggaatCTGGAGGCGGAGAGGCGGAGCTGGCATATCTCACGCACGAGGGGCTGTTCATCAGCGACGCCCTGAATGATGCGGAGCAGCGCAGTAACGCCGCGGCACATGCTCAGACGAGAGCGCAGGCGCGCACCGACGCCGGCGGGAGTGACTCGGCCTCCGCCACCACCGAGTCATCCTCCAGCAGGGAACACAACTCCAACACTACCTCCTCCCTGCCCTTAGGGGGCGCCGCTGCCATCAGTGAGGACGTGATGCCGTCTGATCTGGAGTTGGGTCGGGTGGCCAATAACGTCCAGGAGCTGCTGTACACGGCCTCAGACGTCAGTCATGACCGCTGCGTCAAAGTGCTCATGACACGGGccaaggaCGGCTCTCTGGAGCGTCTGAGCTCGTCAGAGTTCGTGTGTCTGAGTCAGGCGGTGGAGTCGTTCGTGTCGGACACCGAGGAGCTGTGCGGGCGGCGCAGCGTGAGCCTGAGGGGGGCGCTGCAGAGCCAGGCCTACCGCTTCGTGCAGCGCTTCCACGAGGAGCGCAAGACTAAACTCAGTCTGCTGCTGGATAACGAGCGCTGGAAGCAGGCCGAGGTCCCCGCTGAGTTTCAGGATCTGGTTGACTCCATCGCTGACGGACGCATCACTCTGCCCGAGCGCAAACCCTCTGGGTCCGAGGACAGGAAGCCCAGTGAGTTTCTGTTTGTGGACGGGCAGAAGTATGCCGTGGTGGGGACGGTGCTGCTGCTGATACGGATGTTTCTGGAGTACTGCCAGTGTGTGAATGACATTCCCTCCATCACCACCGACATCCTCACACGTTGTGCTTTGTTTCTATGGCGACAGCACTTCAACTCCCGCAGCTGTCAGCTGGTGCTGGGGGCGGGAGCTCTGCAGGTGGTCGGCCTGAAGACCATCACCACCAGAAACCTGGcTCTGGCGTCTCGCTGTCTCCAGCTGGTGGTTCACTACATCCCTGTGATCCGAGCACACTTTGAGACCAGACTGCAGCCCAAACAGTACAGCATACTGAGACACTTCGGCCACATCACCAAGGACTACAACGATCACATCGCAGAGATCTCCGCTAAGCTGGTGGCCATCATGGACAGCATGTTTGAGAAGGCTCTGTCGAAGTATGAGGTGAAGGCGCCGATGCCGTCCGCCTGCTTGCGTAACGTGTGTAAACAGATGGCCAAAATGCACGAGGCCATTTATGAGCTCTTACCGGAGGAGCAGACGCAGATGTTGTTCCTCAGGATAAACGCCAGCTTTAAGCTGCATGTGAAGAGACAGCTAGCGCGGCTAGGAGTCATCAATGATGGAGGACCTCAGTACGGgctggTGATGGTGGACGTGGCGTTTTACTCGGAGAACGTGCAGGCTCTGCGCTCTCTGGAGCGTCTGGACTTAAACATGCCGGAGATCTGGGAGCAGAAGAGGTGATGACGGACAGCTAGTCTCGGCCAATCAGGCCTCTCCGTCACTCCTGCCATCTCAGTGACCAGCTCCGAGGTCGGTGGACAAACAGACTGACGCTCTCCACCTCCTGTGCTGACAGGACAGGCTTCTACAGAGACCAAATCAGGACAAGCTGGAGGGTTGATCAGTCGCCGCTGGGAATTGTGGGGAATGTTGTTTTGTTGCCGGAGACTCGTCCTCAGTGCCTCCTTCAGTACCGCCACTACAGTGCAACTTTCCCTTCGTGTGCAATTCtgattattgttgttattattgctgAATTATTTAATCACAGAGGAATCATgaaatggttatttattttaatcaattttgaTGTTGGTTGAtcaatcatgtttttgtttttttttgtttttttccacgtGAAGCTTTCAGGTCATAACGGCCAGAAGGAGAACTAATACTAAAAAGGGTTTTAAACACATTTCGCTGACTACTTCTTTGACTTTCcacccacattttttttttttagtggctGCTTTTGGTTTCGTGTTCAAGGCCGCTGAGTCGAAGTGTTAAAACTCTGAAGGAATTCTGGTCCAGGTTTTTCAGGAGAATCTGACTATTTAAAAGAGGTTTATATGTGTACATGAAGAAGATCTGCTGTACTCATCTTcaatgaaatcaaatcaaatcttttACAGTAATCAGGATTAGATGAGTGCTGCAAAACAatgaatcacatccaaaataaacgctttttgtttacaatacgtgtgtgtgtgtgtgtactgtgtatatttattatttatatttaaatacacatacacgtGTATATCAAAGAAGAATGTTATAGTAacgtattaaatatatttctaatattaatatatgcatgtaaatatttctaaaatgtgtgtgtatttatatatacataataaatatgcacggTACACATacatcttttattttagatgtgattaatcgttcaGCACTAGATGCAAACTATTGAAGATGGTGTTTAAACTCACCCccagaagagaaagagaaaccgTCTGAAAGTGAAAGATCTTTACATCTTTATAGTTTCCTGTCCATGCAGACTAAAGCGTACGCAGTGTTACTTTAACCCGATGTCATGTGAGTAAATCGAGGCTTGCGGTCGGTCGGTGTGAATGGTTTTCAATCACATCTTGTTTTGCTGAGTTTCTGTTCAGGAGGATCCACGTATCGCTTTAACACTCGTTCTGTCCGGTTCAAAAGTGCCTAACCTTTTATTTGGTATCAAACTGACTCAAACTGTACATTTGTGGGCTACAGTGCCTAGtctgttcgtgtgtgtgtgtgagtgtgtatgagtgtgtgtttcgAGGGCCCTTGTTGCGGCAAAGAAATATACTGATGGGAAACTCTTGTGGCATGTTTGACCTTTTAAAATGTggtactttttattattaataaagccACGGTGAACATAAA

Function

symbol description
vps54 Predicted to enable syntaxin binding activity. Predicted to be involved in Golgi to vacuole transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus. Predicted to be part of GARP complex. Orthologous to human VPS54 (VPS54 subunit of GARP complex).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 54-like isoform X6

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process

KEGG:

id description
K17600 VPS54; vacuolar protein sorting-associated protein 54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251183.1 True 4326 mRNA 0.52 21 25716158 25727538

Neighbor

gene id symbol gene type direction distance location
LOC122353232 rnf150a,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC107729769,LOC107700883 coding downstream 2184 25706824 ~ 25713974 (-)
LOC122349099 LOC107700791,LOC107729560,LOC107598497,LOC107729568,LOC107706374,LOC107595808,LOC107687795 coding downstream 14874 25687797 ~ 25701284 (-)
junba junba,LOC107594404,LOC107757044,LOC107747424,LOC107684248,LOC107675464 coding downstream 137359 25577222 ~ 25578799 (-)
rnaseh2a rnaseh2a,LOC107747423,LOC107594406,LOC107676270,LOC107757040,LOC107583201 coding downstream 147247 25564387 ~ 25568911 (-)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 152303 25561561 ~ 25563855 (-)
aptx aptx,LOC107757069,LOC107746089 coding upstream 82341 25809879 ~ 25813849 (-)
il15 LOC107730128 coding upstream 341638 26069176 ~ 26076862 (-)
znf330 znf330,LOC107746098 coding upstream 349727 26077265 ~ 26083184 (-)
elmod2 elmod2 coding upstream 408168 26135706 ~ 26141269 (-)
zgc:66455 NA coding upstream 414246 26141784 ~ 26147822 (-)
G6201 NA non-coding downstream 94413 25621434 ~ 25621745 (-)
G6200 NA non-coding downstream 95654 25620246 ~ 25620504 (-)
G6165 NA non-coding downstream 211304 25503940 ~ 25504854 (-)
G6132 NA non-coding downstream 329582 25386177 ~ 25386576 (-)
G6125 NA non-coding downstream 399470 25314516 ~ 25316688 (-)
G6223 NA non-coding upstream 9259 25736797 ~ 25737312 (-)
G6594 NA non-coding upstream 41369 25768907 ~ 25799273 (-)
G6634 NA non-coding upstream 108400 25835938 ~ 25844994 (-)
G6636 NA non-coding upstream 111313 25838851 ~ 25846530 (-)
G6650 NA non-coding upstream 191032 25918570 ~ 25918785 (-)
LOC122353196 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 454 25714102 ~ 25715704 (-)
prokr1a prokr1a,LOC107594458,LOC107676304,LOC107747445,LOC107757000,LOC108441199 other downstream 159176 25547725 ~ 25556982 (-)
G6135 ndufaf5,LOC107675590,LOC107594415 other downstream 313803 25400384 ~ 25402355 (-)
G6134 ndufaf5,LOC107594462,LOC107594415,LOC107583196,LOC107684300 other downstream 316141 25398491 ~ 25400017 (-)
G6124 actr2,LOC108423375 other downstream 408187 25304597 ~ 25307971 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other upstream 103786 25831324 ~ 25863787 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other upstream 403250 26130788 ~ 26135486 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other upstream 689321 26416859 ~ 26417897 (-)
LOC122353745 slc9a3r2,LOC107729606 other upstream 726712 26454250 ~ 26523402 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other upstream 1074372 26801910 ~ 26802954 (-)

Expression


Co-expression Network