LOC122353232 (rnf150a,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC107729769,LOC107700883)


Basic Information

Item Value
gene id LOC122353232
gene name rnf150a,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC107729769,LOC107700883
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 25706824 ~ 25713974 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251204.1
TAAAGGACGACGGCGGCGGACAGGTAGATGTTTCGGTCTGACTGCGCTTTAACTGCGTTGTGGGGTCGCCAAGCGATGCCGCGTTCAAGGACAGCGGTCTTATAGCGGAAAAGAGGCTGGATAGAGACGTTCGGGATCACCTGTGAAAACATGGCAGTGTCCCTAACCCAAGCCTGTCGGAGTCTTGCCCTGTCTACGTGGCTCCTGTCGTTTTGCTTTGTGCATTTGCTGTGTCTGGACTTCACAGTGGCAGAGAAGGAGGAGTGGTACACCGCCTTTGTCAACATCACTTACCTGGATCCGGTCACGTCTGAGATAAAGACAGACAAGAGTGAATGTGGCAGATATGGGGAGCACTCCCCTAAGAGAGACGCAAGGGGCTTTGTGTTCATGCCTTCTCTTGTGCAGGACAGGCAGGTGTGTGACGGTAACGCCAAGTTCCCCCTTCCCCATCCCAGCATCCCATGGATAGCGCTCATAGCCAAAGGAAACTGCACCTACAGGGAGAAGATCAGGCATGCTGCTGCTCTCAATGCATCCGCCGTGGTCATTTTCAACGTGGGCTCCAGCAACTCCAATGAGACCATTACCATGCCGCATCAAGGCACCGGCGACGTGGTGGTGATCATGATCCCCGAACCCAAAGGGCGTGAGATGGTGGCCCTGCTGGAGAAGAACATAACCGTGGCCATGCACATCAGCATCGGCACACGCAACCTGCAGAAGTACGTCAGCCGCACCTCCGTGGTGTTCGTCTCCATCTCCTTCATCGTGCTGATGATCATCTCTCTGGCCTGGCTCGTCTTCTACTACATCCAGCGCTTCCGCTACGCCAACGCCCGCGACCGCAACCAGaggAGGCTGGGGGACGCTGCCAAAAAAGCCATCAGTCAGTTACAAGTGCGGACCATCAGGAAAGGCGATCAGGTGAGCGAACAGACATTCTCCGTCTGTGCCGTGTGTATCGAGGGTTATAAACCAAATGATGTAGTCAGGATCTTACCTTGCAGGCATCTGTTTCATAAAGGCTGCGTGGACCCGTGGCTGGTGGACCACCGTACGTGTCCCATGTGTAAAATGAACATCCTCAAAGCTCTGGGCCTGACGTCGAGTGCCGAGTGTCTGAACGAACTTCCTCTGGACTACGAGCTCGCCGTGGGGGGCGTGGCTCTCAACGCCATGGTGATGAGCGACGACGTCATGGCCGGCGACGTCGTCGGGGGGCGTGACCCTGGCGTGAGGATGGTGGGTCTCCCTCAGGTCCTCCTGGACTCCGAGCCGCTGTCCCAGGACACCATGCCCACCGAACAGAGTGAGTTACAGCCAATGGCCAGCGGCAGTTCAGAAGTGTCTCTCGCTACGGGGGCGGGGCATTCGGACATTGACACGCCCACCGACGACCCAAAGTGCTGATTTGGCCCCGCCCACTCACGCTCAAAGGTTTGGGGTGACCACGGCGACGGGCTCCGATGGGTTAAATGGGCTTCGAACGGCCAATGATTGAGCGCGTAACAAACACACTGCCTGCCGAGTACACACTACAGTCCACGTCCGACGTTACCTTTacttcatcttcctcctccatTCTCTGAAACGCAGGGTAAACTCTGTTCTCTCTCGCCCGCAGTGCACACTACAGTTAAAGCACTTGTCCGGTATCGGCAGACGACCGGCTCTGCTCTGCTCGACAATCTTCTCTTTTCCTACCGCCGCAGTGTTCGCTGCCCGTGTCACCATTCGTCCGTGATCCCAGCGGAAAGAACGTGTCAAAGACTATTTTGAATCTGATCAGAAGTGGTTTATTTTTCTATAGAGAAGCGTTCGACGCGCTCGAGTTCtacagtgttaaaaaataaGGAGATAATCTCAGTGTTTAGACGGTTTTCGGAGGGAGTTTGGCCCTCACCAAAGACGCCGGACCTGGAGCGCGTGACGGGACAAAACTGTGGGACTTTTTAGGAAGTGCTCTTTGGATCCCGTGGAGCGGGGCGTGTGATGTTTGCTGTGCATGCCACATGCCCCGCCCCTTCGGCGGAtatcatttaaagggatagttcaccccaaaaatgaacGTTTACTGGCGGCGTCCTCAAGTTTCGCCGTTTGTTCGCAAGTTgttcctctgcggtgaatgggtgccgtcggaacggcTGATATAAACATCACAGTGATATGTAGAAATCCTGCTTTTAATCCGTAATAATGCTTCCGCCGATGAAAGGTGGTCTTgtctgaatcgggagagaaagctgcacagatcaagccaaaaaaaatctctaaataaACATGATGTGAGAAGACTGGAGGGGATGCACTTTATTTCAGGAGGAAGTGTTACGGATTTATGGaaagtaaaaatatgatttttattttttcccttaaaaatCTTTAGTCGTCTCCAGATGTGAACTGATGGATCGGagtctcgttctgacggcacccattcacttccattggcGAGCAAGTGATTTGATTTTCCCCAAATCTGATCAGAAAAACTCATCTTCATATCGGATGACCCAactgagtattttttttttgtttgggtgaactatttctttaaagggAGATTATCAATCATTTCCTGTGATGATTGTTCTGTTACggtttctgtattattttaaaaagtttccgTAAAACTCTAGAAATCACGTTAAAGCAGTTCATACGACTTGCGCGCTGTTCAAACGGTTCCACATGTTTTTGGCAAAACAAAGGTGTGGAAAGACTCGAGGGCGAGCGAAGGATCATTTTCAGGTGCGCTGTTCCTTTAAATCTGTAACTCGTTCTTCCTTGTTTGACTGTATATTGTAAATAGAGAATAATTTTGTCCAGTTCTTTTCCTCAATTTGCCAAGTTTTTCCGTCATGCACTTTATGTATTTAGAGATTGGATTTTGTTTTGAGATTGGGATTTTTGGTCACGAGTTACACACGTGCAgttcacctcacacacacacacacacacacacacacacacacacacacacacacagtagacGTTTACCATTTCATGCTCAGTATTTTGCACGTGTTTCAGTCAAACTGTgctttgaatattaataaattttaatgtaaattttccGGG

Function

symbol description
rnf150a Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human RNF150 (ring finger protein 150).

NR:

description
RING finger protein 150 precursor

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251204.1 True 3087 mRNA 0.50 7 25706824 25713974

Neighbor

gene id symbol gene type direction distance location
LOC122349099 LOC107700791,LOC107729560,LOC107598497,LOC107729568,LOC107706374,LOC107595808,LOC107687795 coding downstream 5540 25687797 ~ 25701284 (-)
junba junba,LOC107594404,LOC107757044,LOC107747424,LOC107684248,LOC107675464 coding downstream 128025 25577222 ~ 25578799 (-)
rnaseh2a rnaseh2a,LOC107747423,LOC107594406,LOC107676270,LOC107757040,LOC107583201 coding downstream 137913 25564387 ~ 25568911 (-)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 142969 25561561 ~ 25563855 (-)
LOC122351449 fbxo48,LOC107747422,LOC107594409,LOC107675512,LOC107583249,LOC107684254 coding downstream 177284 25527479 ~ 25529540 (-)
LOC122353214 vps54,LOC107700845,LOC107598476,LOC107709616 coding upstream 2184 25716158 ~ 25727538 (-)
aptx aptx,LOC107757069,LOC107746089 coding upstream 95905 25809879 ~ 25813849 (-)
il15 LOC107730128 coding upstream 355202 26069176 ~ 26076862 (-)
znf330 znf330,LOC107746098 coding upstream 363291 26077265 ~ 26083184 (-)
elmod2 elmod2 coding upstream 421732 26135706 ~ 26141269 (-)
G6201 NA non-coding downstream 85079 25621434 ~ 25621745 (-)
G6200 NA non-coding downstream 86320 25620246 ~ 25620504 (-)
G6165 NA non-coding downstream 201970 25503940 ~ 25504854 (-)
G6132 NA non-coding downstream 320248 25386177 ~ 25386576 (-)
G6125 NA non-coding downstream 390136 25314516 ~ 25316688 (-)
G6223 NA non-coding upstream 22823 25736797 ~ 25737312 (-)
G6594 NA non-coding upstream 54933 25768907 ~ 25799273 (-)
G6634 NA non-coding upstream 121964 25835938 ~ 25844994 (-)
G6636 NA non-coding upstream 124877 25838851 ~ 25846530 (-)
G6650 NA non-coding upstream 204596 25918570 ~ 25918785 (-)
prokr1a prokr1a,LOC107594458,LOC107676304,LOC107747445,LOC107757000,LOC108441199 other downstream 149842 25547725 ~ 25556982 (-)
G6135 ndufaf5,LOC107675590,LOC107594415 other downstream 304469 25400384 ~ 25402355 (-)
G6134 ndufaf5,LOC107594462,LOC107594415,LOC107583196,LOC107684300 other downstream 306807 25398491 ~ 25400017 (-)
G6124 actr2,LOC108423375 other downstream 398853 25304597 ~ 25307971 (-)
G6089 cyp2u1,LOC107729355,LOC107583182,LOC107756983,LOC107683164 other downstream 572665 25132003 ~ 25134159 (-)
LOC122353196 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other upstream 128 25714102 ~ 25715704 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other upstream 117350 25831324 ~ 25863787 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other upstream 416814 26130788 ~ 26135486 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other upstream 702885 26416859 ~ 26417897 (-)
LOC122353745 slc9a3r2,LOC107729606 other upstream 740276 26454250 ~ 26523402 (-)

Expression


Co-expression Network