wdr19 (wdr19,LOC107591558,LOC107750430)


Basic Information

Item Value
gene id wdr19
gene name wdr19,LOC107591558,LOC107750430
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12390944 ~ 12406555 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251215.1
AATAAATCCGCTTTCTTGTCAGTGATGTCTTGCTGAAAGCTGACTGGCTGTTGCTAAGAGGTTGCTAAGAGAGATTAAGACGCGTCGGAGTGAAGCACTCTGGGAAGTAACGTGTTCGAAATACAAACATGAAGCGTGTTTTCACGCTGTCAGAAAAGACCTGGTCTGCATCTTGCTTGCAGTACAAATGGCAGAAAACAGTAGGAAACTATCTTGCAGTTGCAGGCCCTGACAATTTAGTAAAAATCTTTGATCGGCATGGACAGAAGGTTAATGAGTTGAATCTCTCTGGGATTTGTGTGTCTCTTGACTGGGATAAAGATGGCGATATCTTGGCAGTGATTGCAGAAAAGTCCAGTTCCATTTACTTGTGGGATGCAAATGTTAACAAAACCTCACAGCTGGACAGTGGCATGAGAGATCAGATGTCCTTTCTGCTCTGGTCTAAAACTGGGCCACTATTAGCAGTTGGCACATCTAAAGGAAACCTGCTCATCTACAACCAGCAAACCTCACGCAAGATTCCTGTTCTGGGCAAGCACACGAAGAAGATCACATGTGGCTGTTGGAGCTCTCAGAACCTCCTGGCACTGGGCAGTGAAGACCGCAGCATAACAATCAGCAACCATGAAGGAGACACCATTCGACAGACCTCTGTGAGGGCAGATCCTGCAGATGTTCAGTTCTCAGTGATGAAAACAGATGAGCGATCATCTCCAGGAGAAAGCACTGTTAGTGTGGCTTTAGGAAAGAAGACCTTGTTTCTGTTTAATCTAAATGATCCAGATAACCCTATAGAACTGGCCTTTCAGCAGCGTTACGGCAACATCATCTCCTACCGCtgGTATGGGGATGGCTATATCATGATTGGATTTTCACATGGCTACTTTGTAGTCATTTCAACACACATCCGTGAGATTGGCCAAGAGTTGTTTCAAGCCCACAATCATAAAGACAGCCTGACTAGCATCGCCATCTCTCAGTCTCTAAACAAGGCTGCGTCCTGTGGGGACAACTGTATTAAGATACATGACTTGACTGATCTGAAGGAAATGTATGCTATAGTCACTCTGGATGAGGAGACCAaagGGCTTGATCAGATGTGTTGGACTGATGATGGGCAGTTGTTAGCCGTATCTTCTCAGCAGGGAACTTTGCATGTCTTCCTCACCAAGCTGCCCATATTGGGAGACAGCAGTGGCACTAGAATCGCCTTTCTCACATCCTTGTTGGAGGTCACAGTTGCCAACCAGGTGGAAGGGGAGTCCCCTGTTCCTGTTGCAGTGGAGGTGGAGCCTAGTTTTATAGCTGTGGGACCTTATCATGTTGCTGTGGGCATGAATAACAGAGCGTGGTTTTATGCATTAGGAGACGATGGTGTGGAGCGTGTGAAAGACACTGAGTATTTAGGGACAGTGGCCAGTATGTGCCTGAACTGTGACTATGCTGCTGCCTTGTTTGAGGGGAAGATCCAGCTGCATGTGATTGATGGAGATGAGCAGGTTGTGCAggaggacagacagacaaaacTGTTTCCAGAACCCGATCAGAAATACCGCATCCTCAGTCATGCTCTAACCTCTGAGTTTCTATATTATGGGACGGATACTGGCTTGatccagtgtttttattttgaagactgGCAGAGTGTGAATGAGTATCGCCACACAGTGGGTGTACGCAAAGTCTTTCCAGACCCCAATGGAACACGTCTTGTTTTTATCGATGAAAAAAGTGACGGCTTCCTATACTGTCcgGTGAACGATTTAGTGTTTGAGATCCCAGACTTTTCTCCTGCCATTAAAGGGGTATTATGGGAAAACTGGATCAGCAATAAGGGTGTGTTTGTGGCGTATGAGGAGGACAAAGTCTACACGTATGCCTTCCACAAAGACACCATACAGGGCTCTAAAGTGATTCTAGTTGGTGCCACCAAGTTGCCGTTTTCCCATAAGCCCTTGCTGTTGCATAATGGGGAGCTGACATGTCAGACCCAGAGTGGGAAGATTAATAGTGTGGTTCTGAACACACATTCGTTCCTCAGCAACCCACACAGTGACACCAGTAAAGACAAACACCAGTCGTTACTGCAACAGGCCATTATGCTGAAAAGGTTTTCCGATGCGTGGAATATCTGCAAAGCTCTGAACAGAAACGAAGCATGGGGTGAGCTGGGAAGGGCATGTCTGCATCACATGGAGGTGGAACTGGCCATCAGAGTATACCGCATGATGGGAAACGTCGGCATGGTCATGTCCCTAGAGGATATCAAGGGAATAGAAGATCAGAATTTGCTGGCTGGTCATCTGGCCATGTTCTGTAATGACTACAACCGAGCCCAGGACTTGTATCTGACTTCTTCATATCCTATGGCAGCCCTGGAgATGAGAAGAGACCTACAGCATTGGGACAGTGCGTTACAGCTGGCTAAAAGACTGGACCCTGATGAGATCCCGTTTATTTCTAAAGAATATGCCATACAGCTGGAATTTGTTGGAGATTATACGAATGCACTGGCTCACTATGAGAAAGGAATAACCGGAAACAACAAGtttcaaGATCACGATGAGAGCTGTCTGGCAGGTGtTTCAAGATCAGCTAACCTGGCTGGCAAACACCCCAGCAGAGCTCTTAAGAAAGACTGTGGGGCCATTCTGAAGAGGATGCAGCAATACTCAGAAGCAGCTCAGCTTTATGAAAAAGGCCAATACTATGACAAAGCTGCCTCCGTCTACATACGCTGCAAAAACTGGGCAAAGGTGGGTGAGCTCCTGCCCCACGTGACTTCCCCAAAGATTCACCTGCAGTATGCTAAGGCAAAGGAGGTGGATGGCAAATATAAAGAGGCGGCAATGGCCTATGAAAGCGCACGAGACTGGGACAACGTCATTCGAATCCTACTGGAGCATCTTAACAACCCTGAGGAGGCTGTACGCATCGTACGAGAAACTCAATCCATCGAAGGAGCCAAAATGGTGGCCAGGTTTTTCCTGCGTTTGAGTGATTACGGCTCAGCAATCCAGTTCCTGGTTTTGTCACGTTGCAGTGATGAAGCTTTTCAGCTTGCCCAGCAGCATGGGCAGATGGAGGTCTACGCCGACATCATCGGTTCAGAGGCTACAGTAGAGGACTATCAGAGCATAGCGCTGTATTTTGAGGGAGAGAAGAATCATCTTCAGGCTGGGAAGTTCTTTCAGAAGTGTGGACAGTACAGCAGGGCGCTGAAGCACTTTTTGAAATGTCCTAGCTCTGATGACAGTTTGGCCATAGAGATGGCCATTGAGACGGTAGGGGAAGCCAAGGATGAAGCTCTAACCAATCAGCTTATTGATTACCTGATGGGGGAAAGTGACGGAATGCCAAAGGATGCAAAATATCTGTTCCGGTTGTACATGGCTCTCAAACAGTACAGAGAGGCAGCAAGAACTGCTATTATTATTGCCAGAGAGGAGCAATCTGCAGGAAACTACAGGAATGCCCATGATGTTTTGTTCAGCATGTACGCTGAGCTTCAGACACAGCACATTAAGATCCCAGCAGAGATGGCCACAAACCTGATGATCCTGCACAGCTACATACTAGTGAAGATCCATGTTAAAAGAGGAGATCATTTAAAGGGGGCACGAATGCTTATCCGCGTCTCCAACAACATCAGCAAATTCCCATCCCACATTGTCCCCATCCTCACATCAGCGGTTATTGAATGTCATCGTGCTGGACTAAGGAACTCTGCCTTCAGTTTTGCCTCTATGCTGATGAGACCAGAGTATCGCAACAAGATTGATCTCAAATACAAGAAGAAGATAGAGGCCATGGTCCGTCGCCCAGATACTTctgaggtggaggaggagagctCTCCCTGTCCCTACTGCGGCTTCAGCCTGCCTGAGTGTGAGCTGCTCTGTCCCGGCTGCAAAAACAATCTGCCCTACTGTATCGCCACAGGTCGTCACTTGGTCAAGGAGGACTGGTGTGTCTGCCCACACTGTGATTTCCCTGCTCTCTATTCACAGTTCACCCAGCTCTTGGAGACAGAGTCGGTTTGCCCCATGTGTTCTGAGACCGTAAATGTCAGTGAGGTGAAAAAAGTTTCAGACTGCTCCAGATATCTACAGCAGGACCAACTGGAGCGCTGAAATCCacaaaaagcatgaaaaaggGAAAAGAACGGGTAATGAGAAAAATCTCTTGCTTCTTTTGCTCAAACAATGGGGGGCCAAAATCGGAGACCTCTAAttaaatgaatctgttttgcattttgcataatCTGTCTGCTTAAGGTTTTAGTAAATGAACAATACTAATTGAATAAAATTGTTTCATGATTATTTTTGTGGACAAAACTAAAATGGATGAATTGTGTAACTGTGCCccttgtttcttgtttttaagaAGCAAGAAATTATATTCTTttactgaaaatacaaaaatattatttattcatcaatatTGTAGCAATTCGCAAtcatgttatattattaattttaaaatgcagaataaaaaaagaaaatatgtgagcttttttgtacatttgtaaatgtgtatacatgcatttataactACGGTAGATGATGTGGGCTAAACGTACAGAGGCAACTACCAACATTTATAATAAGGACGACATGATATTCTCCAAAACCCTCCTCCATCTGCCACTGGTCAAACAAACAGGTAGCCTTGTCTTAAACTCATTTACTAAATCTGTGTTGTTATATCAGGCAGCTCAAACTCAAAAGCAATGTTGAAAAAAGCATCTATACTTTTGAGGGACATCAACCTATAACTGTTGTCTCACACATTAAAGTGGTAAAGAAGAAAATGACACAACCAGCTTTAGTCCGAGTGATTCGTGCTGCTGTTTTTTAGCTTGGCCACAAGAGTTCAGCACTGCAGTGTGAGCTAATGAAAGGAGAAAGACCGTTAATCTAACCACCCAAGTGCTGACATTTATGTTGAGCTGGACTGTCCGTTCATTTTACACGTGGCcttaaagtttttaatatagAGAGgctctagttttgttttttaaattttacccATACCTTACTGCTTTTGAGATTTAGgtcaaatgcattttgaataagCTTTAATGAACTAAAATAGTGTAATTGTAATCACCGGAGTTTGTGAAATCTGATTTATTTGCTAGTATATTTGCTTTGAGAttcttgtttgttctttttaagggatatttcaaatttaatatgACGTGCTTCTGtgtaacacaaataaagatattttgaagaatgttgttaACCAATCAGTTTTGCAATAAATCTCTTAAggcacaaa

Function

symbol description
wdr19 Acts upstream of or within cilium assembly. Predicted to be part of intraciliary transport particle A. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in several diseases, including Caroli disease; Senior-Loken syndrome; asphyxiating thoracic dystrophy 5; cranioectodermal dysplasia 4; and nephronophthisis 13. Orthologous to human WDR19 (WD repeat domain 19).

NR:

description
PREDICTED: WD repeat-containing protein 19

GO: NA

KEGG:

id description
K19671 WDR19, IFT144; WD repeat-containing protein 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251215.1 True 5292 mRNA 0.44 37 12390944 12406555

Neighbor

gene id symbol gene type direction distance location
glrba glrba,LOC107702391,LOC107591559,LOC108443987,LOC107655919,LOC107548353 coding downstream 1227 12368875 ~ 12389717 (-)
tmem144a tmem144a,LOC107656881,LOC107548314,LOC107745069,LOC108443989 coding downstream 73753 12312334 ~ 12317191 (-)
npy1r npy1r,LOC107591578,LOC107548312,LOC107656908,LOC107702283 coding downstream 82235 12292229 ~ 12308709 (-)
rapgef2a LOC107745058,LOC107548350,LOC107655945 coding downstream 109116 12248495 ~ 12281828 (-)
klhl2 klhl2,LOC107745059,LOC107655955,LOC107702385,LOC107591556 coding downstream 144039 12236205 ~ 12246905 (-)
ncapd3 ncapd3,LOC107655906,LOC107709432,LOC107750432,LOC107702392 coding upstream 814 12407369 ~ 12419280 (-)
LOC122342838 NA coding upstream 23175 12429730 ~ 12434898 (-)
LOC122342847 NA coding upstream 31267 12437822 ~ 12440445 (-)
adamtsl7 LOC107709448,LOC107750434,LOC107702297,LOC107570220 coding upstream 70963 12477518 ~ 12494325 (-)
zcchc7 LOC107709449,LOC107655886,LOC107548354 coding upstream 93216 12499771 ~ 12544141 (-)
G2829 NA non-coding downstream 54185 12335352 ~ 12336759 (-)
G2826 NA non-coding downstream 100838 12289829 ~ 12290106 (-)
G2750 NA non-coding downstream 240228 12142906 ~ 12150716 (-)
G2742 prss12,LOC107551563,LOC107754187,LOC107656290,LOC107702379,LOC107591549,LOC107750419 non-coding downstream 461948 11927551 ~ 11928996 (-)
G2690 NA non-coding downstream 480934 11849622 ~ 11910010 (-)
G2837 NA non-coding upstream 19658 12426213 ~ 12442443 (-)
LOC122348535 ncapd3,LOC107709432,LOC107702392,LOC107750432,LOC107655906,LOC107591581 non-coding upstream 20612 12427167 ~ 12443883 (-)
G2839 NA non-coding upstream 29362 12435917 ~ 12441497 (-)
G2841 NA non-coding upstream 47676 12454231 ~ 12454769 (-)
G2842 NA non-coding upstream 48799 12455354 ~ 12455572 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other downstream 24836 12337962 ~ 12366108 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other downstream 273561 12097910 ~ 12117383 (-)
apela NA other downstream 602278 11783629 ~ 11788666 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other downstream 810227 11514151 ~ 11580717 (-)
G2584 LOC107656769,LOC107551593,LOC107746013,LOC107754144 other downstream 878111 11510439 ~ 11512833 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other upstream 497644 12904199 ~ 12926482 (-)
smim18 NA other upstream 562538 12969093 ~ 12973012 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 747931 13154486 ~ 13159444 (-)
G3072 NA other upstream 884741 13291296 ~ 13291723 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other upstream 1422908 13829463 ~ 13842664 (-)

Expression


Co-expression Network