caly (caly,LOC107583165,LOC107684294,LOC107675961,LOC107729363,LOC105891014)


Basic Information

Item Value
gene id caly
gene name caly,LOC107583165,LOC107684294,LOC107675961,LOC107729363,LOC105891014
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24184081 ~ 24192107 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251223.1
GCCGGTTATCCGCGGCGATGCAGCTGACATCATACGGCGGCGACGGGAGCGGACGCGCTTCAGTCAATttcacacgcacgcacgcacgcacgcacacaaatCGCCATAAACACGGTAGCTCTCCGTCGGCATCAGCGAGACGCCCGAAGGGAAAGCGATATGGTGAAATTAGGCAGTAACCTGGTGGACAAGATGGAGAGACAGCCGTCGGTGGAGGACGGTTTTGACAACATCCCCCTCATCACTCCGCTGGAGGTCGGCCAGTTACAGCAGCCTTTCCCTGATAAGGTGATTGTGAAAACCACTGCGGAGTATCAGCTgaaggagaagaagaggaagcTGTATGTGCCGAGCATCAAGAAGCTGAACATAAACCTTTATGATGAGATGTCAGAGAAgctcaagCTGACTGGGTTGATTATTATCACCTTGGCGTTTCTGGCGTGTCTGCTGCTGTTGGTCATGTATAAAGCGCTGTGGTACGACCAGCTCGGCTGCCCTGAGGGCTTCGTTCTCCAGCACAGACACTGCACCCCGTCGGCTCTGGAGATGTACTACCCCGAGCAGAACTCCAGGGGCAGCTTGTACACGGCCATGACCCACCTCAACCAGGCCAAGAAGAACATCCCAGAGCTGTCCCCTCCCTGGCTGCCGGTCATGAAGGACGAGATCAACCACTCTGAGAAATAAGGGCCGAGAAAGGGTCACCGTATGTTCACTTTAAAGGGTTGGTGAGGATGGAATCCAGATAATGTTGACGGTCAAGTCGATCGGAAAGgcgtttatgtgtgtatttggtGTTTAAAATGGCGATTCGGTGCGAACATCTATTTAGATTTAACTGTGACACACACAAATGTCTTTGAAGTGAAGGTTTCTAGGTTTCTACTTCGTCGACCTCCTGCAATACATGTGCTTTCGGAAATCTATTTACAATGCTCCATACCCATTTAGAAGAAGTCTTCGAAGCTCATCCGTACGTGTTTTTAAAACGTCACCGGGCCGTTTTCTGCGACGGCCCGTCTCGCTGTGGCATTGTAGATTTAGTCGTGCTGCTTGTAATTCTTGCGAAGTTTGTTAGGCGTTAGTTCTCGCTTCCGGTTTCGTTTGAAGTCATTTAGCTTAGTGTAACGAAGTGTGCGTTGGCTGTGAATCGTGTTCTAATGAACCGCAACGCAACTGAGAAACGAGTGCGTTGGCAAGAAAAAGCATTCCAAAAACTCTGATCATTTTCCCTCGAAGCGACTCAAACTACTGATCGTTGTCTTAAAGCGACGCGTCTTTGATTTAAAAGAGAAACGCCATTATTACGCTCTTTTGGTACATTTAGTAAATGAGAAAATCTGACTTTTGATGGTAAGGACGAAATGATTGGTGCATTTTATACACGTCCGCATGCTTACAAAACCGTACCATATTCTAGAGTTTAAATTGAAGATGTGAAAACCAAGTCATCTGAGTGTAACCTGGAGTGACGTTAAACTGTTTTTAGGTATTAGAACgctcatttttgtgtttgtttgtttgtgcgcTGAAACTTTTACACACGAAGCACCAGcagccatttaaatgtttattaatgttgtagATTCTTTAAAAAGTTGAAGAATGTGAAAACGCCTCGCTAAGGGGAGTGACCtttgaattgtttttgtgtaaatttaTCACTTTACAGCAAATCAGTTCCAGCTGAATGTataaactttcaaaaaaaaaaagcagatgtttCCCCTTTCTgttgctgtttctttttttttttgttctttatatttatctgttgtgatccagttttttgttttttttttccagttgctaaatgtacatttctgatgtgtatttatttatgtatttctctTATTTATTTGACTGGTGCTGGACGGATGAATTGAATTTGTCGTAAGGTGCAGCAGGTGAAATCATAAAGCCTGCAGTATTAGTCATTTCTGTATGTTATGAacattcattcatcttcaaTGGATAATAACACAATAAAGGTTTCAGTATTCACCGG
>XM_043251224.1
GATCGGTTCCGTCTGTTCCGTTTTGACGATCGAAAATTCGCTTAATCCCTTTCAGCGCGCCATACGAAAGAAAGACATCGTTATTTTGCCGTATAACGCCTCGGTGAACGCGCGGCTGTTTGCGTAATAACGGCACGTCGTGAGCGCGCGACGCCGTGCGACGCGTCGCAAATAACGCTTTAATGCTCGTCTGTTAGAGAATTAATAGTGATTTGATGAAGGCTCTGTGGCCGAAGCTGATCGTCTGGACACCTCACACATGCTGATGCGCTGCTGAACGCTGGGCATCTCGGATAACCTTGATGAAGCCGATATGGTGAAATTAGGCAGTAACCTGGTGGACAAGATGGAGAGACAGCCGTCGGTGGAGGACGGTTTTGACAACATCCCCCTCATCACTCCGCTGGAGGTCGGCCAGTTACAGCAGCCTTTCCCTGATAAGGTGATTGTGAAAACCACTGCGGAGTATCAGCTgaaggagaagaagaggaagcTGTATGTGCCGAGCATCAAGAAGCTGAACATAAACCTTTATGATGAGATGTCAGAGAAgctcaagCTGACTGGGTTGATTATTATCACCTTGGCGTTTCTGGCGTGTCTGCTGCTGTTGGTCATGTATAAAGCGCTGTGGTACGACCAGCTCGGCTGCCCTGAGGGCTTCGTTCTCCAGCACAGACACTGCACCCCGTCGGCTCTGGAGATGTACTACCCCGAGCAGAACTCCAGGGGCAGCTTGTACACGGCCATGACCCACCTCAACCAGGCCAAGAAGAACATCCCAGAGCTGTCCCCTCCCTGGCTGCCGGTCATGAAGGACGAGATCAACCACTCTGAGAAATAAGGGCCGAGAAAGGGTCACCGTATGTTCACTTTAAAGGGTTGGTGAGGATGGAATCCAGATAATGTTGACGGTCAAGTCGATCGGAAAGgcgtttatgtgtgtatttggtGTTTAAAATGGCGATTCGGTGCGAACATCTATTTAGATTTAACTGTGACACACACAAATGTCTTTGAAGTGAAGGTTTCTAGGTTTCTACTTCGTCGACCTCCTGCAATACATGTGCTTTCGGAAATCTATTTACAATGCTCCATACCCATTTAGAAGAAGTCTTCGAAGCTCATCCGTACGTGTTTTTAAAACGTCACCGGGCCGTTTTCTGCGACGGCCCGTCTCGCTGTGGCATTGTAGATTTAGTCGTGCTGCTTGTAATTCTTGCGAAGTTTGTTAGGCGTTAGTTCTCGCTTCCGGTTTCGTTTGAAGTCATTTAGCTTAGTGTAACGAAGTGTGCGTTGGCTGTGAATCGTGTTCTAATGAACCGCAACGCAACTGAGAAACGAGTGCGTTGGCAAGAAAAAGCATTCCAAAAACTCTGATCATTTTCCCTCGAAGCGACTCAAACTACTGATCGTTGTCTTAAAGCGACGCGTCTTTGATTTAAAAGAGAAACGCCATTATTACGCTCTTTTGGTACATTTAGTAAATGAGAAAATCTGACTTTTGATGGTAAGGACGAAATGATTGGTGCATTTTATACACGTCCGCATGCTTACAAAACCGTACCATATTCTAGAGTTTAAATTGAAGATGTGAAAACCAAGTCATCTGAGTGTAACCTGGAGTGACGTTAAACTGTTTTTAGGTATTAGAACgctcatttttgtgtttgtttgtttgtgcgcTGAAACTTTTACACACGAAGCACCAGcagccatttaaatgtttattaatgttgtagATTCTTTAAAAAGTTGAAGAATGTGAAAACGCCTCGCTAAGGGGAGTGACCtttgaattgtttttgtgtaaatttaTCACTTTACAGCAAATCAGTTCCAGCTGAATGTataaactttcaaaaaaaaaaagcagatgtttCCCCTTTCTgttgctgtttctttttttttttgttctttatatttatctgttgtgatccagttttttgttttttttttccagttgctaaatgtacatttctgatgtgtatttatttatgtatttctctTATTTATTTGACTGGTGCTGGACGGATGAATTGAATTTGTCGTAAGGTGCAGCAGGTGAAATCATAAAGCCTGCAGTATTAGTCATTTCTGTATGTTATGAacattcattcatcttcaaTGGATAATAACACAATAAAGGTTTCAGTATTCACCGG

Function

symbol description
caly Predicted to enable clathrin light chain binding activity. Predicted to be involved in clathrin coat assembly and endosomal transport. Predicted to act upstream of or within dopamine receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in endosome. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder. Orthologous to human CALY (calcyon neuron specific vesicular protein).

NR:

description
PREDICTED: neuron-specific protein family member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251223.1 False 2011 mRNA 0.44 5 24184081 24192107
XM_043251224.1 True 2165 mRNA 0.44 5 24184367 24192107

Neighbor

gene id symbol gene type direction distance location
sorcs3 LOC107746061,LOC107566138,LOC107684317,LOC108443686,LOC103372478 coding upstream 451835 23684795 ~ 23732246 (+)
cfap58 cfap58,LOC107746299,LOC107583211,LOC107659560 coding upstream 907313 23205389 ~ 23276768 (+)
sh3pxd2aa sh3pxd2a,sh3pxd2aa,LOC107692111,LOC107746291,LOC107746053 coding upstream 1036781 23064152 ~ 23147300 (+)
stn1 obfc1,LOC107566536,LOC107746306,LOC107572935,LOC107683323,LOC107746305,LOC107746065 coding upstream 1120731 23059632 ~ 23063350 (+)
trnae-cuc_5 NA coding upstream 1124978 23059032 ~ 23059103 (+)
msx1b msx1b,LOC107569049,LOC107675944,LOC107706889,LOC107684328,LOC107583240,LOC107729361 coding downstream 23704 24215811 ~ 24218006 (+)
taf5 taf5,LOC107676012,LOC107574147,LOC107583167,LOC107684290 coding downstream 50587 24242694 ~ 24250298 (+)
pdcd11 LOC107729346,LOC107676223 coding downstream 59246 24251353 ~ 24265835 (+)
LOC122341621 LOC107729353,LOC107574144,LOC107577677,LOC107675842,LOC107684284,LOC107583168,LOC107706779 coding downstream 87410 24279517 ~ 24281818 (+)
ppm1kb LOC107594437,LOC107729359,LOC107675910,LOC107706815,LOC107583174,LOC107684283 coding downstream 106003 24298110 ~ 24305263 (+)
G5606 NA non-coding upstream 15386 24165193 ~ 24168695 (+)
G5611 zgc:154142,LOC107594422,LOC107676135 non-coding upstream 90367 24092261 ~ 24093714 (+)
G5584 NA non-coding upstream 444224 23738605 ~ 23739857 (+)
G5551 NA non-coding upstream 448478 23491614 ~ 23735603 (+)
G5552 NA non-coding upstream 451358 23489995 ~ 23732723 (+)
G5650 NA non-coding downstream 95586 24287693 ~ 24295237 (+)
G5644 LOC107729350,LOC107675808,LOC107594434 non-coding downstream 113561 24305668 ~ 24315548 (+)
G5689 NA non-coding downstream 149885 24341992 ~ 24342299 (+)
G5690 NA non-coding downstream 154056 24346163 ~ 24346391 (+)
G5696 NA non-coding downstream 194417 24386524 ~ 24407457 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other upstream 629456 23543064 ~ 23554625 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other upstream 1332688 22840688 ~ 22851393 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 2549029 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 2563489 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 2822641 21321462 ~ 21361440 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 91375 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 364690 24556797 ~ 24558929 (+)
G5817 NA other downstream 511741 24703848 ~ 24704319 (+)
LOC122329747 ndufaf5,LOC107594415,LOC107583196,LOC107684300,LOC107675590,LOC107756989 other downstream 791939 24984046 ~ 25398340 (+)
LOC122349019 gstcd,LOC107757010,LOC107729368,LOC107676029,LOC107594450,LOC107684312 other downstream 950403 25142510 ~ 25185475 (+)

Expression


Co-expression Network