clgn (clgn,LOC107551136,LOC107671330,LOC107712024,LOC107737082,LOC107674239,LOC107556507)


Basic Information

Item Value
gene id clgn
gene name clgn,LOC107551136,LOC107671330,LOC107712024,LOC107737082,LOC107674239,LOC107556507
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19777091 ~ 19785647 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251231.1
TTTATCGCAGAGGGGCGGTTGTAAGTGGCATCCTGCGCTTCTGATAACACTGGCTATCGCTCTCATTCATAGCGGACTCTTCGCGCCGAAACACTGAATGACAAACCCATCCGCTTAAGCCACAGTTGACCGAAATATTGCCAATATTCATTGAGCTGGAGaTGAAGTTGTGGTGGGGCTGGACGTGTCTCTTGTTGCTCTCCATCTCCATGGTAACATGGGCCCAGAAAGAAGAGCtggatgatgaagaggaggcTCAAGTGGAAGATGGAGATGTGGACATGGAGACAGACAGCGGGGAAAGCACTGAAGCAGACGCCAATGTGTCTTTTGAGGTAACATACAAGACCCCAGTTCCAACAGGAGAAGTGTACTTCACTGCGACATTTGATGATGAGTCTTTGAGCAGctggcAGGTgtcaaaaacaatgaaagaGGATGCTGATGAAGATATTGCAAAATATGACGGTAAATGGGAGGTTGAGCCCCTGAAGGAAAACAAGGTGCCTGGTGATCTGGGGTTGGTCCTGAAATCTCGTGCTAAGCACCATGCCATCTCTGCTCTGCTTAACAGACCCTTTGTGTTTAAGGACAAACCCCTTATTGTCCAATATGAGGTCAACTTTCAAAACGGAATTGACTGCGGCGGTGCTTACATCAAGCTATTGTCAGACTCAGAAGATTTAGACCTGGAGCAGTTTCATGACCGGACACCATACAGCATTATGTTTGGGCCGGACAAATGCGGAGAGGACTACAAACTGCACTTCATCTTCAGACATAAAAACCCTCTTAATAAAGATGTGGAGGAAAAACATGCCAAACGACCAGACGTTGATCTAAAGAAGATCTACATCGATAAAAAGACTCACCTTTTTACTCTGGTTTTAAATCCGGACAATAGCTATGAGCTGTTTATAGACCAGTCCAGTGTTAGCAGAGGAAGTCTGTTGACAGATGTCGTCCCGCCTGTGAACCCTCCAAAAGAGATCGACGATCCCAAAGACTCCAAGCCAGAGGACTGGGATGAGAGAGCCAAAATCCCTGACCCGGAAGCAGTCAAACCTGAAGACTGGGACGAGGAGGCCCCAGCTAAGGTGCCTGATCCTGATGCAGTGAAGCCTGATGGCTGGTTGGATGATGAGCCAGAGTTTGTGCCTGACCCCACTGCAGAAAAGCCCGAGGACTGggatGAAGAAATGGATGGAGAATGGGAGGCTCCTCAGGTGCCAAATCCAGCATGTTCAGCTGCTCCTGGCTGTGGTGAATGGAAGCCGCCCATGATCAACAATCCTCAGTATAAGGGCAAATGGAAAGCTCCTCTCGTAGACAACCCCAACTACCAGGGTGTGTGGAGTCCACGGAAGGTCGCAAACCCTGACTACTTCGAGGATCTTCACCCATTTAGGATGGAGTCATTTAGTGCTGTAGGTTTGGAGCTGTGGTCTATGACCTCTGACATTTACTTCGACAATTTCATTATTACCTCGGAAAAGGAAGTGGCGGACCGCTGGGCTGCAGACAGCTGGGGACTCAAAAAACTGGTGGCTAGTGCCAATGAGCCTGGAGTGTTGAGTCAGCTGGCACTGGCTGCGGAAGAGAGGCCCTGGCTGTGGGTGGTTTACATCCTTACCGTTGGTTTGCCTGTTGGACTGGCTGTGCTCTTCTGCTGGCCAAAGAAGTCGGACGATGACTACGTATACAAGAAAATCGATCAGCCCAAAGCCGAAGCAGAGGAGGtagcagaagaagaagaggaggaggaagacgaggcagagaaaggaaaagatgaagatgaagcgAAAGAAGAGGAAGATACCGAAGCTACTGGTAATGAGAATGGCGAAGGGATGGACAACGACATTGGAAAAGATGGTGGAGAgtcagaggaggaggaagaggaggaggaggaggaggaggaggaagaagaggccAGTAAGCCAAATGACACGCCCTCAGAGGATGAAATGAAGGACGCCGATGAAGGAATTCAGAGCACAGGAGAAGAACCTAAAGCTGTGAGAAAGAGAAGAGTACGGAAGGACTGAAAATCCGCATTTTCCCCATGTTTCTTCCTCCCTTCTCTCGTTCCTTTGCCTCTTTTTGCTGCATGCTTTTGGCAATATGCCCTTCAGCATGCAAAAAAACGGCAAACCTAGCCGCTCTCCTGAAGAGGTCATTCTTCATCCAACTGAACCTCGCCTCCCCTCTTTCAGTCTTCCGCTTAGTTCTTATCGGTTACAGTTGGGATTTAGATACAAGAGTCAGACCTGCTGAGTTTTAGCTCTacgttttttccttttttcgaTTACGATTCAAGTAGTACTGGGCCAGTGTTTCCCTACTAGTAAGTCTGAATACTGTGAAGGGAAATGGATATTTTAGAAAGACGAGCTAGTTTATGATCACCTCAACgtttttaagttattaaaaaagGGTTCAGTTCTTTTGTGAGTTTTTAAGTTATGAGCTTTTTAACATGATCAAATCACTCTGATcgtatttattgtttgtatctTGTTTGAAAAATGATGCAATTGAGTTTAGATATAGGACCTTTTAATCTTGCATTCTACTGTCATTACCAATGTTAGCAGGCTCTGGAGGAGAGCTCCGTCAAACCAGGAGCCGTCTTCACCAAACATCTAGGTCAGTGAAGTGCTAGGAATGCAAATCAGTATTGCTTTTTTGGCATCGAAGAAAGTCGTTACGCACAAGTCAGAGCTGATCTCAGCTCCGCGTCATCACTGACACTCTAACAGCAGACCCAGACACAAGCACACTGAAAACAGACTGACCACCATGTATGAAACCATTCAGCTTCGGAAGGTTGTTTTTCAAGTGatgaacagttttatttttctgctttttttttttttggttgtgtgTTCAGCCTTACAAGGACAGccttttgtttacatgtttgcaAACTGTTCATTGCTCttggaaataaatatttactataaa

Function

symbol description
clgn Predicted to enable calcium ion binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in blood; central nervous system; and ventral mesoderm. Orthologous to human CLGN (calmegin).

NR:

description
PREDICTED: calmegin isoform X2

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09551 CLGN; calmegin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251231.1 True 2967 mRNA 0.46 15 19777091 19785647

Neighbor

gene id symbol gene type direction distance location
maml3 maml3,LOC107674228,LOC107737085,LOC107712021,LOC107556508,LOC107671314 coding downstream 19735 19665097 ~ 19757356 (-)
tesk1a si:ch211-113e8.3,LOC107671138,LOC107551064,LOC107712023,LOC107737090,LOC107674262,LOC107559636 coding downstream 152850 19611829 ~ 19624241 (-)
zfp91 LOC107671112,LOC107551018,LOC107748831,LOC107674257,LOC107737094 coding downstream 180089 19589806 ~ 19597002 (-)
cntf NA coding downstream 198416 19575214 ~ 19578675 (-)
si:dkey-117m1.4 LOC107671095,LOC107748830,LOC107551007,LOC107674247,LOC107559642,LOC107737095 coding downstream 205386 19554440 ~ 19571705 (-)
hmx4 hmx4,LOC107712017,LOC107552578,LOC107671594,LOC107674271,LOC107752946,LOC107556514 coding upstream 92544 19878191 ~ 19879651 (-)
hmx1 LOC107671606,LOC107712016,LOC107556513,LOC107674270,LOC107552587,LOC107752954 coding upstream 95478 19881125 ~ 19882724 (-)
adra2c adra2c,LOC107552592,LOC107671617,LOC107712015,LOC107752971,LOC107556512,LOC107674202 coding upstream 126033 19911680 ~ 19916332 (-)
dok7b dok7,LOC107749932,LOC107679881,LOC107674231,LOC107714234 coding upstream 181220 19966867 ~ 19984964 (-)
rgs12b rgs12b,LOC107749922,LOC107556525,LOC107714241,LOC107679871,LOC107674230,LOC107551217 coding upstream 209543 19995190 ~ 20032019 (-)
G4615 NA non-coding downstream 144838 19631098 ~ 19632253 (-)
G4611 NA non-coding downstream 165576 19608383 ~ 19611515 (-)
G4607 NA non-coding downstream 196230 19579564 ~ 19580861 (-)
G4600 NA non-coding downstream 223945 19552628 ~ 19553146 (-)
G4597 lgi2b,LOC107671185,LOC107550949,LOC107748826,LOC108263253 non-coding downstream 232731 19542976 ~ 19544360 (-)
G4671 NA non-coding upstream 150743 19936390 ~ 19936759 (-)
G4713 NA non-coding upstream 152372 19938019 ~ 19938401 (-)
LOC122345298 NA non-coding upstream 370017 20155664 ~ 20157523 (-)
G4870 NA non-coding upstream 414348 20199995 ~ 20265069 (-)
LOC122345304 NA non-coding upstream 479638 20265285 ~ 20266183 (-)
cdk2ap2 cdk2ap2,LOC107684972 other downstream 237945 19535964 ~ 19539146 (-)
znf827 znf827,LOC107550613,LOC107684451,LOC107742547 other downstream 1896674 17811459 ~ 17880417 (-)
smad1 smad1,LOC107684445,LOC107734580 other downstream 2012359 17745837 ~ 17764732 (-)
LOC122330431 lsm6 other downstream 2340384 17434717 ~ 17436707 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 3328572 16447088 ~ 16448519 (-)
si:dkey-9i23.16 NA other upstream 351388 20137035 ~ 20140579 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other upstream 503670 20289317 ~ 20312948 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 581482 20367129 ~ 20369111 (-)
G4958 NA other upstream 898195 20683842 ~ 20686740 (-)
ctnna2 ctnna2,LOC107689479 other upstream 1120523 20906170 ~ 21410571 (-)

Expression


Co-expression Network