CI01000000_10481263_10483211 (RAP2A.S, RAP2C, RAP2A, RAP2AB)


Basic Information

Item Value
gene id CI01000000_10481263_10483211
gene name RAP2A.S, RAP2C, RAP2A, RAP2AB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 10481089 ~ 10483594 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_10481263_10483211.mRNA
AGCCTCGCTCTCTTTTAGAAGCACTAGCCAGCTAACGCTAGTCATGTAGCACTCCATTCACACGGACACCAAACATGGACACGACTACATACAATACTTGTGTTTTATATCGCCTCTGTGGCTAACAAACTCTCGGATGATCGGATCTCGATGGAGATAGAGTGCAGATGGAGGGGCGTTGTGGATTTAGCTAGATATTCACTCAGATAAAACACTCCTCTGTTGAATCTGGTTTTGATTTCTTCGAACCCGAGAAAAGTGTTCCTCTGGTGTTGTTTTGATCATAAAACGTCTCGATAAGAAGTGCTGTGGTATTTTTGGTGTTTTTATGGCCGATGCTGAGCAGATAAAGTTAGCTGTAGCTTAAGCCTGGATCAGACCAAATGAAGGAGTATAAGGTGGTTGTGCTGGGCAGCGGCGGTGTGGGCAAGTCCGCACTCACGGTCCAGTTTGTGACCGGAACATTCATAGAAAAATATGACCCGACCATCGAGGACTTCTATAGAAAGGAGATCGAGGTGGATTCGTCCCCCTCGGTACTGGAGATCCTGGACACCGCTGGGACCGAGCAGTTTGCGTCCATGCGAGATCTGTACATTAAAAATGGGCAAGGCTTCATTTTAGTCTACAGCCTTGTCAATCAGCAGTCATTTCAGGACATCAGACCAATGCGGGACCAGATCGTTCGTGTGAAGCGCTTTGAGAAGGTGCCTCTGATCTTGGTGGGGAATAAGGTAGACCTGGAGTCAGAGCGGGAGGTCGCGGGTTCTGATGGCCGTGCCCTTGCACAAGAGTGGGGCTGTCCCTTCATAGAGACCTCGGCCAAGAGTAAGAGCATGGTGGATGAGCTGTTCGCTGAGATTGTAAGGCAGATGAACTACACCACTTTGCCCGAGAAGCAAGAGCAGTGCTGCACCGCCTGTGTTGTGCAGTGAACGTCCCGGCCTTACTTTCACTCCAGGTAAAAAGCCTTGAGCAAAACAAACCAACATTCAGGCTTTCTAGTGCACTCACATCTGATTGTGTCCGTGATTTTTTTATCTTTACATAAAATTGTGTTGTGATAATTCTGACCAAACAAAAACAGATAGATGGATAGTACAAATAAA

Function

symbol description
rap2c Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Rap protein signal transduction and negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be located in recycling endosome membrane. Predicted to be active in plasma membrane. Orthologous to human RAP2C (RAP2C, member of RAS oncogene family).
rap2ab Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Rap protein signal transduction and negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be located in recycling endosome membrane. Predicted to be active in plasma membrane. Orthologous to human RAP2A (RAP2A, member of RAS oncogene family).
rap2a Enables GTPase activity; guanyl ribonucleotide binding activity; and magnesium ion binding activity. Involved in several processes, including actin cytoskeleton reorganization; microvillus assembly; and positive regulation of protein autophosphorylation. Acts upstream of or within establishment of protein localization. Located in plasma membrane and recycling endosome membrane.

GO:

id name namespace
GO:0055038 recycling endosome membrane cellular_component

KEGG:

id description
K07839 RAP2C; Ras-related protein Rap-2C

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_10481263_10483211.mRNA True 1109 mRNA 0.47 2 10481089 10483594

Neighbor

gene id symbol gene type direction distance location
CI01000000_10474520_10476010 NA coding downstream 5079 10474411 ~ 10476010 (-)
CI01000000_10468528_10473166 NA coding downstream 7923 10467552 ~ 10473166 (-)
CI01000000_10465427_10467327 NA coding downstream 13762 10465203 ~ 10467327 (-)
CI01000000_10448446_10452941 NA coding downstream 28148 10448272 ~ 10452941 (-)
CI01000000_10431043_10433001 NA coding downstream 47890 10431034 ~ 10433199 (-)
CI01000000_10504203_10520863 MBNL3 coding upstream 20609 10504203 ~ 10520863 (-)
CI01000000_10533216_10540624 HS6ST2 coding upstream 49540 10533134 ~ 10540968 (-)
CI01000000_10544400_10562125 GPC4 coding upstream 60728 10544322 ~ 10563078 (-)
CI01000000_10590812_10591914 NA coding upstream 106453 10590047 ~ 10592285 (-)
CI01000000_10612377_10662964 GPC3 coding upstream 128783 10612377 ~ 10662964 (-)
G8028 NA non-coding downstream 46803 10434021 ~ 10434286 (-)
G7946 NA non-coding downstream 109942 10369020 ~ 10371147 (-)
G8016 NA non-coding downstream 135593 10344942 ~ 10345496 (-)
G7924 NA non-coding downstream 258815 10221012 ~ 10222274 (-)
G7884 NA non-coding downstream 332009 10147499 ~ 10149080 (-)
G7968 NA non-coding upstream 102003 10585597 ~ 10589211 (-)
G7991 NA non-coding upstream 221305 10704899 ~ 10719278 (-)
G7985 NA non-coding upstream 288833 10772427 ~ 10774179 (-)
G7996 NA non-coding upstream 311766 10795360 ~ 10796229 (-)
G8080 NA non-coding upstream 432416 10916010 ~ 10916315 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other downstream 66576 10407395 ~ 10409950 (-)
G3931 NA other downstream 4077564 6157013 ~ 6403525 (-)
G3716 NA other downstream 4480320 6000407 ~ 6000769 (-)
G3650 NA other downstream 4940208 5540463 ~ 5540881 (-)
CI01000000_05465020_05466303 NA other downstream 5014573 5464058 ~ 5466516 (-)
CI01000000_10824957_10825464 MMGT1, TMM32 other upstream 340817 10824324 ~ 10825464 (-)
G8125 NA other upstream 556675 11040269 ~ 11040909 (-)
G8699 NA other upstream 2801730 13272585 ~ 13311429 (-)
G9036 NA other upstream 3243206 13726800 ~ 13727090 (-)
G9602 NA other upstream 3857408 14341002 ~ 14346534 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007946 rap2c coding NC_007125.7 CM002898.2 30975163 ~ 30983011 (-)