LOC122353552 (zgc:194443,LOC107552058,LOC107551053)


Basic Information

Item Value
gene id LOC122353552
gene name zgc:194443,LOC107552058,LOC107551053
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19805893 ~ 19809040 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251329.1
agtctggCAAGCAGGTCTGCGTTGTCATTGTTTGAAAAAGGGGTGGGAAgtttccttttaaatgaaacttaaaGAGGAAGAGATAAACGAAACTCTGCACACACAGGCAACCAAACTATCACCTCGTCACAGTTATGATGGACAACAGAAACCTTCAGAGACAGTTACCAACAACCTTCATTAAACTGGTGGTGCCTTTCATAATAGGGGTCGCTGCTGCAGTAGTGTTGCAGATGTCCAGGCAACAAAATAATCAACATCATGTTTCAGTTCATGATTCAGTTGATATAGTGCATCATCCAGGTGAAGAGCTCCGGATTCTTTTGGTTGGAAAAACAGGAGTGGGGAAAAGCGCAACAGGAAACactattttgagaaaaaaggtttttaaatcagAGATATCGTCCTCTTCTGTGACTGGGGAGTGTGACAAGTTTCATGCAATAATAAACGGCAGAAAAGTGTCCGTCATTGACTCTCCAGGTCTGTTTGACACCAGCTTAACTACAGATGAAGTGGTCAAGAGAATTAAACTCTGCATCCCTCTCTCTGCTCCTGGTCCACATGTCTTCTTGGTTGTGATTCAGCTGGGCAGATTCACAGATGAAGAGGCAGAAGCTGTAAGGATCATTCAAGCTGTTTTTGGTGAGGAATCCTCTGCTTACATCATGGCTCTGTTCACTCATGGAGATCGACTGGAGggcaaaaacattcacacatttGTGCGGGACAACCCAGAACTGCTCAGTTTCATCAAAGCATGCAGCGGACGATACCATGTGTTcaataataaagaacaaaacCCTGAACAGGTCAATCAGCTGCTGGACCAGATTGATAAAATGGTCACTGGAAATGGAGGACAATACTACACCAGTGAGATGCTTGAAAGGGCTGAGAGAGCGATCGAGGAAGAGATGAAACGTATCTTGAAGGAGACAGAGGagcagagacggagagagataGAAGCTCTGAAGTCAGAGCTTGAACGAGAAGAACTGAATAAACGTCATGAGCAGCAGGCAAGATGGAAGGCTGAGAGAAGCAGTTCAATTTTTGATCATATAGCACAATTTGtcagcaatattgtaaaaagaGTCTTCAGATTTTTTAGTTGAACATTTTCGGATGTCAGTTCAAATTATATCCCATATAAAAGTATCTTCTTAAAAAGCCACTTATATTGTGAAGAAAGGTTGAAAAAATTTCCAtgcaaacatgcagtttttagaTTCTTCAAAATCCGTTTTCTCTCAGGTACGTCACCAGCGCAAGCTTCATGCTGAACATTTCTATATCACTCTAGTAAACAATGTCCATagttacaaaagaaaaattgtcttgactttattaaatagttattttggGAAAAACTGTAGGGAGGCGATTTCCCCCACTGTACCctatacactctcagaaatagcCGTCACTGGTGTGgtatacctttttaaaaactacacaCCTTTTGTACCTTTAGGCATACAATTTAAGTACtaatacaaacatgtacctttttaaaaatgtacctacccaatgacagcttttgtatctttatttctgagagtgtatacCTAGTCTTTATAGTCTGATAATACTCAGATTGTTGTAGCCTAGCTGCatatcaacatttttctttctttctttctgtctttctttctgtctttgaatGTTGCAGATCAAATTAGGCATCATTTTCTTGTATGAGTGTGAATTAAAAAGTGCAATTAATGTTGACTGTCTATGTATGGGGTTCAGAACTAAGTGCGCTTAACAGCCAAAGACATGCTTGCTGGGCAATTGGATCCCATTCAAAGCCTACAGTattatttgtacagtataataacGTTTTATCCTatcaaaaaaaaaccctatagGATTCCAATCTGGTTTTGGCCGTTAAAGGTAACCTTTTCAACATTTTCCATGTAGTTGACATCGGCCCAATTTATGTGTGCTGTATGCGAATTCAAGACtagtgtgagtgtgttcttCTAAATTCAgtctattaaaatacatttgaataatcaTAAATTCAAGACATGGggacaaaaaagttaaatatttataacactttatatAGTTAATCAATATGACACAAAGAGTgccatttttctctaaaaatgtttgattaCAAAAGTGATATAGATTTTATACAACAACTCAATAAACAAAAGTTAATTGAGAGACTTATGTTTTAGACACCAAATGTcctgtttttgctctattttgctaataaaaagaaatcaaaccTCA
>XM_043251337.1
CCAGTAGCTGGGGTTTTTAAGTCAGATCACAGAGATagagacaaaaatataaacttgaGTTATGATGGACAACAGAAACCTTCAGAGACAGTTACCAACAACCTTCATTAAACTGGTGGTGCCTTTCATAATAGGGGTCGCTGCTGCAGTAGTGTTGCAGATGTCCAGGCAACAAAATAATCAACATCATGTTTCAGTTCATGATTCAGTTGATATAGTGCATCATCCAGGTGAAGAGCTCCGGATTCTTTTGGTTGGAAAAACAGGAGTGGGGAAAAGCGCAACAGGAAACactattttgagaaaaaaggtttttaaatcagAGATATCGTCCTCTTCTGTGACTGGGGAGTGTGACAAGTTTCATGCAATAATAAACGGCAGAAAAGTGTCCGTCATTGACTCTCCAGGTCTGTTTGACACCAGCTTAACTACAGATGAAGTGGTCAAGAGAATTAAACTCTGCATCCCTCTCTCTGCTCCTGGTCCACATGTCTTCTTGGTTGTGATTCAGCTGGGCAGATTCACAGATGAAGAGGCAGAAGCTGTAAGGATCATTCAAGCTGTTTTTGGTGAGGAATCCTCTGCTTACATCATGGCTCTGTTCACTCATGGAGATCGACTGGAGggcaaaaacattcacacatttGTGCGGGACAACCCAGAACTGCTCAGTTTCATCAAAGCATGCAGCGGACGATACCATGTGTTcaataataaagaacaaaacCCTGAACAGGTCAATCAGCTGCTGGACCAGATTGATAAAATGGTCACTGGAAATGGAGGACAATACTACACCAGTGAGATGCTTGAAAGGGCTGAGAGAGCGATCGAGGAAGAGATGAAACGTATCTTGAAGGAGACAGAGGagcagagacggagagagataGAAGCTCTGAAGTCAGAGCTTGAACGAGAAGAACTGAATAAACGTCATGAGCAGCAGGCAAGATGGAAGGCTGAGAGAAGCAGTTCAATTTTTGATCATATAGCACAATTTGtcagcaatattgtaaaaagaGTCTTCAGATTTTTTAGTTGAACATTTTCGGATGTCAGTTCAAATTATATCCCATATAAAAGTATCTTCTTAAAAAGCCACTTATATTGTGAAGAAAGGTTGAAAAAATTTCCAtgcaaacatgcagtttttagaTTCTTCAAAATCCGTTTTCTCTCAGGTACGTCACCAGCGCAAGCTTCATGCTGAACATTTCTATATCACTCTAGTAAACAATGTCCATagttacaaaagaaaaattgtcttgactttattaaatagttattttggGAAAAACTGTAGGGAGGCGATTTCCCCCACTGTACCctatacactctcagaaatagcCGTCACTGGTGTGgtatacctttttaaaaactacacaCCTTTTGTACCTTTAGGCATACAATTTAAGTACtaatacaaacatgtacctttttaaaaatgtacctacccaatgacagcttttgtatctttatttctgagagtgtatacCTAGTCTTTATAGTCTGATAATACTCAGATTGTTGTAGCCTAGCTGCatatcaacatttttctttctttctttctgtctttctttctgtctttgaatGTTGCAGATCAAATTAGGCATCATTTTCTTGTATGAGTGTGAATTAAAAAGTGCAATTAATGTTGACTGTCTATGTATGGGGTTCAGAACTAAGTGCGCTTAACAGCCAAAGACATGCTTGCTGGGCAATTGGATCCCATTCAAAGCCTACAGTattatttgtacagtataataacGTTTTATCCTatcaaaaaaaaaccctatagGATTCCAATCTGGTTTTGGCCGTTAAAGGTAACCTTTTCAACATTTTCCATGTAGTTGACATCGGCCCAATTTATGTGTGCTGTATGCGAATTCAAGACtagtgtgagtgtgttcttCTAAATTCAgtctattaaaatacatttgaataatcaTAAATTCAAGACATGGggacaaaaaagttaaatatttataacactttatatAGTTAATCAATATGACACAAAGAGTgccatttttctctaaaaatgtttgattaCAAAAGTGATATAGATTTTATACAACAACTCAATAAACAAAAGTTAATTGAGAGACTTATGTTTTAGACACCAAATGTcctgtttttgctctattttgctaataaaaagaaatcaaaccTCA

Function

symbol description
zgc:194443 Predicted to enable GTP binding activity. Orthologous to human GIMAP1 (GTPase, IMAP family member 1); GIMAP4 (GTPase, IMAP family member 4); and GIMAP6 (GTPase, IMAP family member 6).

NR:

description
PREDICTED: GTPase IMAP family member 4-like

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251329.1 True 2253 mRNA 0.38 4 19805893 19809040
XM_043251337.1 False 2180 mRNA 0.37 4 19806119 19809040

Neighbor

gene id symbol gene type direction distance location
LOC122353562 LOC107671374,LOC107712028,LOC107556515,LOC107674199,LOC797949,LOC107752905 coding upstream 2040 19800154 ~ 19803853 (+)
naa15b naa15b,LOC107712022,LOC107737080,LOC107674234,LOC107671368,LOC108434806,LOC108263533 coding upstream 5748 19786710 ~ 19800145 (+)
LOC122353421 LOC107712008,LOC107671479,LOC107552100,LOC107737086,LOC107556535,LOC107674229 coding upstream 142197 19653271 ~ 19663696 (+)
zgc:56493 zgc:56493,LOC107674259,LOC107737089,LOC107559635,LOC107671288,LOC107551115,LOC103040975,LOC108444223 coding upstream 165377 19637305 ~ 19640516 (+)
faah2a faah2a,LOC107551107,LOC107712025,LOC107737091,LOC107559634,LOC107674256,LOC108263609,LOC108434801 coding upstream 170488 19629756 ~ 19635405 (+)
htra3a htra3,htra3a,LOC107671567,LOC107674193,LOC107752916,LOC107712020 coding downstream 1077 19810117 ~ 19817661 (+)
gpr78a LOC107712019,LOC107552545,LOC107671586,LOC107556530,LOC107674203,LOC107752934 coding downstream 22945 19831985 ~ 19834951 (+)
cpz cpz,LOC107712018,LOC107752940 coding downstream 27202 19836242 ~ 19845286 (+)
lrpap1 LOC107749950,LOC107551171,LOC107714242,LOC107679883,LOC107556528,LOC107674255 coding downstream 154117 19963157 ~ 19966782 (+)
si:ch211-89o9.4 LOC107679878,LOC107750040 coding downstream 279688 20088728 ~ 20096155 (+)
G4579 NA non-coding upstream 27810 19743162 ~ 19778083 (+)
G4553 NA non-coding upstream 231133 19574411 ~ 19574760 (+)
G4531 NA non-coding upstream 281113 19524546 ~ 19524780 (+)
LOC122333031 NA non-coding upstream 629066 18993761 ~ 19176827 (+)
G4361 NA non-coding upstream 1058140 18747234 ~ 18747753 (+)
G4677 dok7,LOC107749932,LOC107674231,LOC107552150,LOC107714234,LOC107679881 non-coding downstream 161736 19970776 ~ 19972265 (+)
G4678 dok7,LOC107714234,LOC107674231,LOC107679881,LOC107749932 non-coding downstream 169929 19978969 ~ 19980622 (+)
G4679 dok7,LOC107552150,LOC107749932,LOC107679881,LOC107674231 non-coding downstream 173764 19982804 ~ 19983127 (+)
G4680 NA non-coding downstream 175685 19984725 ~ 19984981 (+)
G4686 rgs12b,LOC107749922,LOC107679871,LOC107551217 non-coding downstream 190301 19999341 ~ 20000548 (+)
scoca scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533 other upstream 28843 19715553 ~ 19777050 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other upstream 283494 19521084 ~ 19522399 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other upstream 1521249 18247250 ~ 18284644 (+)
lsm6 lsm6 other upstream 1907347 17896535 ~ 17898546 (+)
gab1 gab1,LOC107725185,LOC107734574,LOC107684448 other upstream 2195148 17551473 ~ 17610745 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other downstream 333421 20142461 ~ 20145856 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other downstream 432778 20241818 ~ 20243349 (+)
LOC122348864 ctnna2,LOC107706127 other downstream 1512422 21321462 ~ 21361440 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other downstream 1781837 21590877 ~ 21620592 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other downstream 1823175 21632215 ~ 21635052 (+)

Expression


Co-expression Network