peli1a (peli1a,LOC107700844,LOC107747159,LOC107598475,LOC107709617,LOC107594259,LOC107703798)


Basic Information

Item Value
gene id peli1a
gene name peli1a,LOC107700844,LOC107747159,LOC107598475,LOC107709617,LOC107594259,LOC107703798
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26821073 ~ 26833754 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251440.1
TCTGGAGAGCTGTCAGTGCACGGAGACTGCTGGGGACATCCTGCCTCACTCCCTACATGATTATTTTGGGCATTTTATCCGACAAACAGAACGACCGTTGTCACTTATTTCCGACAACTCCCGAGTCAGTCCGCCTGGAGTTTCTTTAGTTTGGCGCGTATCTGAGAAGGCACGCtaaaaaagtcttattagagATGTCTTACGCTGGAGCACTGAGGAAGCAAGAAGGAAAGAAATAGATATACAAGAAGGGTTTGAGCTATAGACCAGAGCGATGTTGGCCCCTGAACAGGAGCCGCTGAGCTCCTCCAAACCCATCAAATACGGAGAGCTCATCGTCCTCGGCTACAACGGCTCCCTACCGAACGGAGACCGGGGCAGAAGAAGGAGCCGTTTCGCTCTCTTTAAGAGACCCAAAGCCAACGGCGTCAAACCCAGCACCGTCCACAGCACATGCAGTCCGCAGACCGCCAAGGCCATCAGCAACAAAAACCAGCACAGTGTGTCGTACACGCTCTCCAGGGCGCAGACGGTGGTCGTGGAGTACGCACACGACAGCACCACCGACATGTTTCAGATCGGCCGGTCCACCGAAAGCCCCATTGACTTCGTGGTGATGGACACGGTGCCTGGTTGTCACGGCAGAGGCGACACGCTGTCGTCTCAGAGCACTATATCGCGCTTCGCGTGCCGGATCGTGTGTCAGAGAGCGCCGCCCTACACCGCGCGCATCTACGCCGCCGGCTTCGACTCGTCCAAAAGCATCTTCCTAGGGGAGAAAGCGGCGAAATGGTGGTGCGCCGACAGCCAGATGGACGGCCTGACCACTAACGGCATATTAGTGATGCGACCCCGGCACGGCTTCACCTGCGAGTCCAAACCCGGCTCCTGGAGAGAGATCTCCGTCTGCGGCAACGTCTTCACGCTCCGGGAGACCCGCTCCGCTCAGAAACCCGGAAAACTGGTGGAGAATGAGTGTCACGAGCTGGTGGACGGCACTTTCCTCGACCTGTGCGGCGCGACGCTGCTGTGGCGATCGGCCGAGGGCCTGTCCCGCACGCCCACCCCCAAACACCTGGAGCTGCTGCGGCGGGAGCTGAACGCGGCGCGGCCCCAGTGTCCCGTGGGCTTGCACACCCTGGCCTTCCCCAGCCTGGAGCGCTCGTCCAGCCCCGAGCAGCAGCCCTGGGCCTACCTGAGCTGCGGGCACGTGCACGGACAGCACTGCTGGAGGGGCTCGGCCGAGGAGGACGGCTCGCGGAGCGGAGAGGAGCTGGGGCTGGAGCCGGGCGAGCGCGAGTGCCCTCTGTGCCGCTCGCGGGGCCTGTACGTGCCGCTGAAGCTGGGCCGCGAGTCGGCCTTGTACCTGGACGCCGCTCCGCCGACGCACGCCCTCAACCCCTGCGGTCACGTGTGCTCGGAGCGCACCGCCGCCTTCTGGAGCAGACTGCTGCTGCCTCACGGAGCCCACGGCTTCAGCCCCGCCTGCCCCTTCTGCATGCGGCCCCTCGCCCGCCACCGGAGGAGCGTGCGGCTCATCTTCCAGGGGCCGCTGGACTGAGTGTGTGCGGCCGGGTCCCAGTAACCTGCTACACCCCTGAAGGCGCAGTCTGCCCAAAAGTGACCATCTAGACCGTGCTTTATTCACCCTCGAGATCCTAGATGTATATGAGACGAATCTGAGTTATATGTGGAGCACAAAACcggtcttaaaggaatagttcacccttTTACGAGTATTTCCAAGCTCAtttcgggtgaactatttctttaagtaGTTTGGGTATATTTGAAGAAATAgccaacaatatattttatgagccaaaatgataaatcattaggatactaagt
>XM_043251449.1
tAGCGCTTTCATTTGTTTGTAGATTTGCTCTCGTGTTTCCTTCTTTCCTGTCTTGTATGTTTTTTGTCTGTTAGCTACTttttgcttgtgtttgtttgtagatGTGTTCTCGTTTCGTTTGTTTTGTTACTTTGCGCTTGTGGTGTTGATTTGTTTGTGGCTTATTTGCACATGTAAGCGTGCCGCGTGTAGTTTTGCGCTTCATTGAGTTTTAACTGATTTGAGCTTGTTAtcctttttttgtgtattgtttGGTTTGCAGGTGTATTTGTGCATGCGCGCGTTTGCTGATGTATCTCGTCTTTGTGTCCCTGtgttctttgtttatttgtgctgGACAGTGTTTGTTTACTTACAGTTCATGTTTGTAAGCGTCTGTAGTTGATTCGTGCATGTTTGCTATCTCTATTGTGATTCACATCTCTCGTTTCGTttgttgcgtgtgtgtgtgtgtgtgttctttgcacatttatttatgtctgtcgttgttttgtttgtttgttgcttgGGACTGGTGTAAATTGTATGCAGTGTTTGTATGGGTGTGCACACTTTCTCatggttgtttgtttgtgttgattttgcatcagtgttttcttttgcaCTTGTTTATCTCCGTTCACGCACACGAGAGATTAAAGTCATTTGTGGCCAGTTGATGTTTTTTGTGTCTGAAAACACCGATGTCTGTCGCCTGCTATTTTTGCGACTCGTGGTTTCATCGCGTGCCAGCGGCAACTTTTCGTGACCGCTTGACCCTGACAGATCAAAACAGCACCGATGCCAACCCACACCGAGAGGAAGTGAAACCATCCCAGTGATATTTAGAGAAGATCTCCTTCGTCTTATTTCCCAGACGTCATTACCTACTTGTGTCTTATCGAACGAGTCTCTTCATTGTAATACAATCTTTCTCTGATTCCTAttttttgagggtttttttttaacgctaCAGTCTCAGCGGCGCCTCCCTGCAGATGTCTTACGCTGGAGCACTGAGGAAGCAAGAAGGAAAGAAATAGATATACAAGAAGGGTTTGAGCTATAGACCAGAGCGATGTTGGCCCCTGAACAGGAGCCGCTGAGCTCCTCCAAACCCATCAAATACGGAGAGCTCATCGTCCTCGGCTACAACGGCTCCCTACCGAACGGAGACCGGGGCAGAAGAAGGAGCCGTTTCGCTCTCTTTAAGAGACCCAAAGCCAACGGCGTCAAACCCAGCACCGTCCACAGCACATGCAGTCCGCAGACCGCCAAGGCCATCAGCAACAAAAACCAGCACAGTGTGTCGTACACGCTCTCCAGGGCGCAGACGGTGGTCGTGGAGTACGCACACGACAGCACCACCGACATGTTTCAGATCGGCCGGTCCACCGAAAGCCCCATTGACTTCGTGGTGATGGACACGGTGCCTGGTTGTCACGGCAGAGGCGACACGCTGTCGTCTCAGAGCACTATATCGCGCTTCGCGTGCCGGATCGTGTGTCAGAGAGCGCCGCCCTACACCGCGCGCATCTACGCCGCCGGCTTCGACTCGTCCAAAAGCATCTTCCTAGGGGAGAAAGCGGCGAAATGGTGGTGCGCCGACAGCCAGATGGACGGCCTGACCACTAACGGCATATTAGTGATGCGACCCCGGCACGGCTTCACCTGCGAGTCCAAACCCGGCTCCTGGAGAGAGATCTCCGTCTGCGGCAACGTCTTCACGCTCCGGGAGACCCGCTCCGCTCAGAAACCCGGAAAACTGGTGGAGAATGAGTGTCACGAGCTGGTGGACGGCACTTTCCTCGACCTGTGCGGCGCGACGCTGCTGTGGCGATCGGCCGAGGGCCTGTCCCGCACGCCCACCCCCAAACACCTGGAGCTGCTGCGGCGGGAGCTGAACGCGGCGCGGCCCCAGTGTCCCGTGGGCTTGCACACCCTGGCCTTCCCCAGCCTGGAGCGCTCGTCCAGCCCCGAGCAGCAGCCCTGGGCCTACCTGAGCTGCGGGCACGTGCACGGACAGCACTGCTGGAGGGGCTCGGCCGAGGAGGACGGCTCGCGGAGCGGAGAGGAGCTGGGGCTGGAGCCGGGCGAGCGCGAGTGCCCTCTGTGCCGCTCGCGGGGCCTGTACGTGCCGCTGAAGCTGGGCCGCGAGTCGGCCTTGTACCTGGACGCCGCTCCGCCGACGCACGCCCTCAACCCCTGCGGTCACGTGTGCTCGGAGCGCACCGCCGCCTTCTGGAGCAGACTGCTGCTGCCTCACGGAGCCCACGGCTTCAGCCCCGCCTGCCCCTTCTGCATGCGGCCCCTCGCCCGCCACCGGAGGAGCGTGCGGCTCATCTTCCAGGGGCCGCTGGACTGAGTGTGTGCGGCCGGGTCCCAGTAACCTGCTACACCCCTGAAGGCGCAGTCTGCCCAAAAGTGACCATCTAGACCGTGCTTTATTCACCCTCGAGATCCTAGATGTATATGAGACGAATCTGAGTTATATGTGGAGCACAAAACcggtcttaaaggaatagttcacccttTTACGAGTATTTCCAAGCTCAtttcgggtgaactatttctttaagtaGTTTGGGTATATTTGAAGAAATAgccaacaatatattttatgagccaaaatgataaatcattaggatactaagt

Function

symbol description
peli1a Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in Toll signaling pathway and protein K48-linked ubiquitination. Predicted to act upstream of or within regulation of Toll signaling pathway. Orthologous to human PELI1 (pellino E3 ubiquitin protein ligase 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase pellino homolog 1-like

GO:

id name namespace
GO:0008063 Toll signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251440.1 False 1851 mRNA 0.59 7 26821073 26833754
XM_043251449.1 True 2634 mRNA 0.53 7 26821073 26828425

Neighbor

gene id symbol gene type direction distance location
vps54 vps54,LOC107709616,LOC107700845,LOC107598476 coding downstream 1902 26803408 ~ 26819171 (-)
slc25a23a slc25a23a,LOC107747161,LOC107594260,LOC107703801 coding downstream 23059 26787308 ~ 26798014 (-)
LOC122350383 khsrp,LOC107703803,LOC107594262,LOC107700847,LOC107598477 coding downstream 34173 26778467 ~ 26786900 (-)
crtac1a crtac1a,LOC107700849,LOC107598482,LOC107747162 coding downstream 47253 26767286 ~ 26773820 (-)
avpi1 LOC107730030,LOC107700857,LOC107598489,LOC107703811 coding downstream 82033 26734472 ~ 26739040 (-)
sertad2a NA coding upstream 16475 26850229 ~ 26853814 (-)
rab1aa rab1a,LOC107598472,LOC107747156,LOC105021598,LOC107666439,LOC107676578,LOC107594256,LOC107601860 coding upstream 23703 26857457 ~ 26861770 (-)
pane1 cenpm,pane1 coding upstream 36540 26870294 ~ 26871984 (-)
zgc:158803 zgc:158803,LOC107700834,LOC107747154,LOC107703792,LOC107598467,LOC107709610,LOC107594252,LOC108411937 coding upstream 38902 26872656 ~ 26878150 (-)
mri1 mri1,LOC107700835,LOC107594353,LOC107703717,LOC107598470 coding upstream 45313 26879067 ~ 26891282 (-)
G6870 NA non-coding downstream 56593 26760004 ~ 26764480 (-)
G6874 NA non-coding downstream 62781 26754732 ~ 26758292 (-)
G6873 NA non-coding downstream 72117 26748723 ~ 26748956 (-)
G6827 gprc5b,gprc5bb,LOC107729503,LOC107578286,LOC107700862,LOC107598492,LOC107709629,LOC107703814 non-coding downstream 114245 26653242 ~ 26706828 (-)
G6887 NA non-coding upstream 99378 26933132 ~ 26942207 (-)
G6923 NA non-coding upstream 160684 26994438 ~ 26994699 (-)
G6926 NA non-coding upstream 172893 27006647 ~ 27007143 (-)
G6927 NA non-coding upstream 173749 27007503 ~ 27007987 (-)
G6929 NA non-coding upstream 175402 27009156 ~ 27009552 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 18119 26801910 ~ 26802954 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 297671 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 403176 26416859 ~ 26417897 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other downstream 685587 26130788 ~ 26135486 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other downstream 957286 25831324 ~ 25863787 (-)
si:ch211-286b5.5 NA other upstream 83915 26917669 ~ 26920034 (-)
LOC122349164 NA other upstream 150790 26984544 ~ 26992582 (-)
LOC122344379 NA other upstream 362484 27196238 ~ 27202628 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 406570 27240324 ~ 27255067 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other upstream 541563 27375317 ~ 27385079 (-)

Expression


Co-expression Network