arhgef38 (arhgef38,LOC107695304,LOC107714644,LOC107700325,LOC107757628)


Basic Information

Item Value
gene id arhgef38
gene name arhgef38,LOC107695304,LOC107714644,LOC107700325,LOC107757628
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14966434 ~ 14976255 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251509.1
CATGGAGTTAGTGTACACTGCAAGAGCAGCAACACTGCACCTGTTCCTCTTCCCAGACTCTCcccttctctgtctctctctttcacctTTACACCAGACAGCCAAACAAGAGGGAGCAGAAAGGGGTCAACATGGATCCCAACCAGGCCAGTGGGAATGACAGAGAAAGTGAAAAGggggagaagaaagagaaggatAAAGGCATTAAAAGGAGAAACAGACTTTTTATAAGATACCTGGAAAGGAGGAAGACAGATACTATTGTGGATGAGGACGCTTCCAAAGGTGACATCAGCATCTCAACCTTGGTGAGAAGGAGCCATTCTGACAAGACTGAGTATAGCGCTAAACTTAAAGAGAAAATGTCCCCGCATGATCTCTCCTCACCCACATCCCCAGCCATGGATCCAGAAGAGATCCGCCATAGAAGGATGGtaaaaaggtcaaaggtcatcgAGGAGCTGGTTAGGACAGAGGGAGACTATCAAAAGGACTTGGAGCTCTGCATAAGCGAGGTTTTGCTTCCTTTAAGAGCAGCCCAGgtGGTGGATATAGATCGACTGTTCACCAACattgagtctgtgtgtgttgtctcTGCTGAACTGCTCCAAAGACTGAGAGATGCCATAGCTGACCCTGACCCCGAAACTCAACTCATAgGAGAAGTGTTTATCCAAGCCAAAGCTGTCATGGAGGATGTATACAAAATTTACTGCTATCATCACGACGAGGCGAATGCTTTGCTCAAGTCTTATGAAGCACAGGATGACATCCAGCAGCATTTTAGAAGATGCATATCCACACTCAAGAAAATATACGACCAAGAagGGAAGCCCAATTTGCTTGATATGGGCTCTCTGCTTATTAAACCGGTGCAGCGTATTATGAAATACCCGCTGCTATTGGCTGAGCTGTGGAATGCCACACCCACAGACCACCCTGACAACAGGCCCCTACAGGAAGCTCTGACCACTGTAAAGATTATTAACATCAACATTAACGAGTTCAAGAGGAGAAAAGACATAGTGCTGAAGTATAAGAGGAGTGATGATGAAACCTCACTGATCGGTAAACTCAACAAGTTCAACATTCATTCAATCAGAAAGAAATCCGACCGACTGACAAGCTATTTCAAGATTCTCACTGGTGTCGAGCCACAGGTGAGAGATGAGGCGTTTGACAAAGAGGAAAAGCTTTTCCGTAGCCTGGAGAAAGCTGTGAGACAGCTGGTGAAAAACATCACCTGCTACTTGCTCTATACTCAGGAGATGATATCTATTGCTGTTCAAAATGCACAGGACCTAGAAGCTATAATGAAGGATCCAGACAAAATAGACACAAATGGCTTTCAGCAAAAGAAGAACGGCAATGATCCATACAAACAGTTTAAAGATCATATGGAGCGTCTTGTTCTTGCTCCACTCTCAAGCCTGCTGGGAATGTTTGCATCGCCCCAGAAGCTGATACAGAAGCGCTACGACAAACTGTTGGACTACTGCAGCCAGCTGGATTCCCGATCCTCCAAAGAGGAGCAGGGCCAGGCCAAAAAAGATTACCTGGCCCTCAATGCACAGCTGCTTGAGGAGCTGCAGTGCTTCAACCGAGCTGTCAGGACGATCCTCACCAACTGCTTGATTTGTGTAGTAAAATTAATTAGAAAGCTGATGGAAGACGCTCAGCCGCCTGTTCATCAGATACCGGTTCCCTTGTCGAACTTTAGTGAAGTCCAAAACTCAATCATGGAGGAGCTGAGCAACCTTGGATTCTTCAAAGATAATTCCCAAAAGCTGATGGAGCGCAAAGTGAGCTTTGAAAAACGGGACAAGAAAACGGTCCCAGAGATCCCCAGACAGACAGAGGAGCACAGAGCCTGGCTCCTGGAAGAGTTTGCAGTGGATCGTCTCTATCAGCTCAAGCGTAACTGCAACGCCTGTCAGGAAAATGACGTGAGTCTGCTGGAGGGGGAGCTGGTGGCTCTGCTGGAAGACAAAGACCCTATGGGAAGCAGCAGCCGCTGGCTAGTGCATACTGGGAGTACGCAGGGCTATGTGTACTCCTCCTTCCTGAAAGCCTACAACCCCCAGCGGGAGGTGAGCGAGAGGCCAGATGACTTTGACAATCTGAGTCTGTTCGTGTCGAACAGCAGGAGCAGCAGCATGCGGAGCTTCAGTCCGTACAGCACTTCCGACGGTCTGTCCCCTCAGTCTGTACCACAGGACGAGCCGGACTCCTCCGACGAACAACATTTCTACGCGGTTTATGCATTCCAGGCCCGCTGTGAACAAGAGCTCACGCTTCAGGAGTACCAGCATGTTCGTATCCTTCAGTTCTCAGACCTCGTTGGCAACAAAGACTGGTGGCTGGCCGAATCCAACGGACAAAAAGGCTACGTCCCGGCAAATTACCTTGGAAAGATGTCGTATGcttaaaaccatttttgttttaatctgttaatattttaaactttatttaaaagaagaagaatatgAATATAGCTTTTAAATTATTCGCTTAATGAAGGCCACCCCtgcacaaatatttttgcacatGTGATGCTACCGACAGTGTTTTCTTGAATTATATACAAATCGTTATAGAGAGCTTgttaatcaaaaaaatgtattttaactaATTGTAtatagcaatattaatatataaaagattatgtgatgaataaaatatttacgaTCATG
>XM_043251516.1
TGCATGGAGTTAGTGTACACTGCAAGAGCAGCAACACTGCACCTGTTCCTCTTCCCAGACTCTCcccttctctgtctctctctttcacctTTACACCAGACAGCCAAACAAGAGGGAGCAGAAAGGGGTCAACATGGATCCCAACCAGGCCAGTGGGAATGACAGAGAAAGTGAAAAGggggagaagaaagagaaggatAAAGGCATTAAAAGGAGAAACAGACTTTTTATAAGATACCTGGAAAGGAGGAAGACAGATACTATTGTGGATGAGGACGCTTCCAAAGGTGACATCAGCATCTCAACCTTGGTGAGAAGGAGCCATTCTGACAAGACTGAGTATAGCGCTAAACTTAAAGAGAAAATGTCCCCGCATGATCTCTCCTCACCCACATCCCCAGCCATGGATCCAGAAGAGATCCGCCATAGAAGGATGGtaaaaaggtcaaaggtcatcgAGGAGCTGGTTAGGACAGAGGGAGACTATCAAAAGGACTTGGAGCTCTGCATAAGCGAGGTTTTGCTTCCTTTAAGAGCAGCCCAGgtGGTGGATATAGATCGACTGTTCACCAACattgagtctgtgtgtgttgtctcTGCTGAACTGCTCCAAAGACTGAGAGATGCCATAGCTGACCCTGACCCCGAAACTCAACTCATAgGAGAAGTGTTTATCCAAGCCAAAGCTGTCATGGAGGATGTATACAAAATTTACTGCTATCATCACGACGAGGCGAATGCTTTGCTCAAGTCTTATGAAGCACAGGATGACATCCAGCAGCATTTTAGAAGATGCATATCCACACTCAAGAAAATATACGACCAAGAagGGAAGCCCAATTTGCTTGATATGGGCTCTCTGCTTATTAAACCGGTGCAGCGTATTATGAAATACCCGCTGCTATTGGCTGAGCTGTGGAATGCCACACCCACAGACCACCCTGACAACAGGCCCCTACAGGAAGCTCTGACCACTGTAAAGATTATTAACATCAACATTAACGAGTTCAAGAGGAGAAAAGACATAGTGCTGAAGTATAAGAGGAGTGATGATGAAACCTCACTGATCGGTAAACTCAACAAGTTCAACATTCATTCAATCAGAAAGAAATCCGACCGACTGACAAGCTATTTCAAGATTCTCACTGGTGTCGAGCCACAGGTGAGAGATGAGGCGTTTGACAAAGAGGAAAAGCTTTTCCGTAGCCTGGAGAAAGCTGTGAGACAGCTGGTGAAAAACATCACCTGCTACTTGCTCTATACTCAGGAGATGATATCTATTGCTGTTCAAAATGCACAGGACCTAGAAGCTATAATGAAGGATCCAGACAAAATAGACACAAATGGCTTTCAGCAAAAGAAGAACGGCAATGATCCATACAAACAGTTTAAAGATCATATGGAGCGTCTTGTTCTTGCTCCACTCTCAAGCCTGCTGGGAATGTTTGCATCGCCCCAGAAGCTGATACAGAAGCGCTACGACAAACTGTTGGACTACTGCAGCCAGCTGGATTCCCGATCCTCCAAAGAGGAGCAGGGCCAGGCCAAAAAAGATTACCTGGCCCTCAATGCACAGCTGCTTGAGGAGCTGCAGTGCTTCAACCGAGCTGTCAGGACGATCCTCACCAACTGCTTGATTTGTGTAGTAAAATTAATTAGAAAGCTGATGGAAGACGCTCAGCCGCCTGTTCATCAGATACCGGTTCCCTTGTCGAACTTTAGTGAAGTCCAAAACTCAATCATGGAGGAGCTGAGCAACCTTGGATTCTTCAAAGATAATTCCCAAAAGCTGATGGAGCGCAAAGTGAGCTTTGAAAAACGGGACAAGAAAACGGTCCCAGAGATCCCCAGACAGACAGAGGAGCACAGAGCCTGGCTCCTGGAAGAGTTTGCAGTGGATCGTCTCTATCAGCTCAAGCGTAACTGCAACGCCTGTCAGGAAAATGACGTGAGTCTGCTGGAGGGGGAGCTGGTGGCTCTGCTGGAAGACAAAGACCCTATGGGAAGCAGCAGCCGCTGGCTAGTGCATACTGGGATTCTACGCGGTTTATGCATTCCAGGCCCGCTGTGAACAAGAGCTCACGCTTCAGGAGTACCAGCATGTTCGTATCCTTCAGTTCTCAGACCTCGTTGGCAACAAAGACTGGTGGCTGGCCGAATCCAACGGACAAAAAGGCTACGTCCCGGCAAATTACCTTGGAAAGATGTCGTATGcttaaa

Function

symbol description
arhgef38 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in Golgi stack and cell junction. Orthologous to human ARHGEF38 (Rho guanine nucleotide exchange factor 38).

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 38

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20711 ARHGEF38; Rho guanine nucleotide exchange factor 38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251509.1 True 2693 mRNA 0.46 14 14966436 14976255
XM_043251516.1 False 2220 mRNA 0.47 13 14966434 14975992

Neighbor

gene id symbol gene type direction distance location
tet2 LOC107714646,LOC107695330,LOC107595052,LOC107598249,LOC107700324,LOC107757629 coding upstream 7326 14938737 ~ 14959108 (+)
LOC122348129 mtap,LOC107595051,LOC107714626,LOC107700323,LOC107598256,LOC107757575,LOC102313215 coding upstream 104518 14854210 ~ 14861916 (+)
toporsa topors,LOC107695355,LOC107700322 coding upstream 112524 14850160 ~ 14853910 (+)
ndufb6 ndufb6 coding upstream 116763 14848013 ~ 14849671 (+)
mxd4 mxd4,LOC107695376,LOC107714650,LOC107757594,LOC107700283 coding upstream 123025 14832703 ~ 14843409 (+)
g3bp2a g3bp2,LOC107695289,LOC107714642,LOC107700328,LOC107757577,LOC107598276 coding downstream 4117 14980372 ~ 14988078 (+)
uso1 uso1,LOC107714641 coding downstream 12142 14988397 ~ 15004240 (+)
coro2aa coro2a coding downstream 29352 15005607 ~ 15024881 (+)
spag5 LOC107714621,LOC107695699,LOC107595089 coding downstream 62149 15038404 ~ 15049923 (+)
psip1a psip1,LOC107658176,LOC107572235,LOC107742007,LOC108439950 coding downstream 681042 15657297 ~ 15690847 (+)
G3381 LOC107714625,LOC107695349,LOC107595098 non-coding upstream 96542 14862612 ~ 14869892 (+)
G3394 NA non-coding upstream 154291 14749316 ~ 14812143 (+)
G3391 gpank1,LOC107700266 non-coding upstream 156713 14745709 ~ 14809721 (+)
G3384 NA non-coding upstream 183595 14716000 ~ 14782839 (+)
G3374 NA non-coding upstream 191757 14681459 ~ 14774677 (+)
G3432 NA non-coding downstream 49455 15025710 ~ 15029067 (+)
G3443 NA non-coding downstream 61024 15037279 ~ 15037670 (+)
G3431 NA non-coding downstream 86996 15063251 ~ 15114948 (+)
LOC122350773 NA non-coding downstream 468933 15445188 ~ 15446124 (+)
G3593 NA non-coding downstream 494367 15470622 ~ 15475480 (+)
G3380 LOC107572695,LOC107695836 other upstream 174646 14723545 ~ 14791788 (+)
npy2r npy2r,LOC107572195,LOC107714623,LOC107695741,LOC107757570,LOC107700264 other upstream 353757 14610244 ~ 14612677 (+)
lrata lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590 other upstream 362546 14602312 ~ 14603888 (+)
LOC122345399 NA other upstream 485088 14480198 ~ 14481346 (+)
G3187 gatb,LOC107695556,LOC107695902 other upstream 848001 14114431 ~ 14118433 (+)
hemgn hemgn,trmo other downstream 54689 15030944 ~ 15034800 (+)
bnc2 bnc2,LOC107595060,LOC107737409,LOC107737408,LOC107678088,LOC107598241 other downstream 202348 15178603 ~ 15317624 (+)
G3599 NA other downstream 501843 15478098 ~ 15498680 (+)
G3647 NA other downstream 676838 15653093 ~ 15653381 (+)
LOC122348759 raph1b,LOC107654246,LOC107707841,LOC107719733,LOC107705038 other downstream 1088016 16064271 ~ 16069915 (+)

Expression


Co-expression Network