zgc:175214 (zgc:175214,rn122,LOC107675969,LOC107684287,LOC108434705,LOC105891037)


Basic Information

Item Value
gene id zgc:175214
gene name zgc:175214,rn122,LOC107675969,LOC107684287,LOC108434705,LOC105891037
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24268078 ~ 24274231 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252642.1
AGGGGAATCGCTCaggaagggagggagggatTGGAGGACAGAGTTGCGAGGCAAACCAGGATCACATGAGCGCAGATCTGTTTACAAACTGAAACTGTGCGGCCAGGAAAGACGCAGGAGCCTTCCTGGAGAATATTACTGGCTGGCCCGACTAGAACACATCTTTAACCCCCAGATGCTTGCGTTTTGGCTCGGATATTTGTTGAATGAGCTAAGGGACTGTTCGGGGGGGTTTTTTGGTTCACTTTCTTGATGGAAGGACTGAGGGAGCAGATGGTTTTAGGTGGAGAGAAAAAATACTCCCCCACACAGGCGAACACATAAACACTCCAGCGGCTGGATGGTGGCGAAAATACAGTTCTCTTCGATCTCTAAACCGCTTGATGTTCGATAAAGGAATATacctaaaaaaaccccaaaacagaCGGATCGAGAGCGACGTCAAGGAAGAGGAGCTAGAATAATCGACAGAGAGAGACATGCCAAAGTCTTTTGCAATGAGGATTTGAGGGAAGACTGTAGATGGAGTCTTGTGTCAGTTTGGATGTTGTGGATGTTTAGTGCTCGCTAAACCACCATACGCAGGAATTATTATTAAGGAATTTGGCAACTTCTGTGTATGACAACACAAAGAAGTGCCATCCGGCCACATACGGACTGGATCTCAGCGACAAGAAGAATATCAAGGGCACATTATGCTCCCTTTGTCTGTGTAACAAAGCACCTTGTGCATATTCACATCAGCGGAGCCAAAGAGTGATTGAAATCTTTTGTTCTTCGATGCTGACATCATAAAAGTGGGATGAATGGAGGAATAATTGAACTATAATCAAGACAGCACACCCTGTCATTTGAAGAGCTGCTTTTGAGACCCGTCTGACCTACGGGAAGAACGTCAGGAAAATTGTTGAGAATAAGTGAACCCGGAATCAAGCTTTTGCTTGTGTCCTCCAGCCCCCGCATTGCCTGTTCCAGACAAGCAGTGAGTTTGCAGCGGCAGTGCTTGGAGTCAGATTACATGCAACCATTCCAATGGTGTAACGgcTGCCTCTGTGGTCTAGGACTGCAGCATTCAGACTGTGATATGTCAGAGGAAGACATCTACCGTCTGCCGCTCAACGTGTACGTCATCGTACTGGGCATAGGCATGTTCATCTTCATGCTCAGTGTAATCTTCTGCTGCTATCTGTTCAGATTGAAACAGCAAGGTACAAGGGAGCAGTACAGCTACAACGAGGTGGTGTTGAAAGGCGCGGGAAAGAAGCTGAGCCTGCTGGGACAGCCCTGCGCCGTGTGTCTAGAGGAATTCAAGACCAGAGACGAGCTGGGCGTCTGCCCGTGTTCACACACCTTCCATAAGAAGTGCCTGCTGAAATGGCTAGAGATCCGCAGCGTCTGCCCGATGTGCAATAAACCCATCATGCGTCTCCACAACACCGACGCCCCCCGAGGAGCCGAGGGGCTACAAGACCCCGAGGAGGTGTGACCCCAGAAACTGTACGGCCCACGGCCAGACTTAACACCCTCAAGTTCTGCGACTGATAGAACATATCATGTGACCTGCCAAGGCTCACCAAAGCCATCTATATGCACCGCCACAGCGGACCCAGAGAACGCGGGGAAACCAGGACGACACTAGTGATTCAGTACCATATCGCCAGTAGCCAAACATAAGAATAATCTCCTATATTATCGTGCCACAATAATCTTTAAAAGTAGTATCGTGCCGAGGTTCTAAAGCGTGAGACGCACCGTGCATGCTGGGTAACGGATGTTAAAACGAGAGGTAAATATCTCAGGAGTTTGCCTCAGGGGATCTAACCAggcaacaaaagaaaacattaaacttCGGCAGTTAAACTTCTGCTGTCGGTGGACAGCCGTATATATGTGATAATAGGTGTAGTGCACTGTCCGTTTGACCGGTACTACAGGTCTTCAAGAAGATCCTGCGTAGTccttacagaaatattaaatatataatcagtaaCCAGCAGTTCTTATCCAATATCGTGTCCATTGCTTGAATTGTTCccttttcattgttattttgtattgtttgtttttgaataaaatgtcatgtttttgtg

Function

symbol description
zgc:175214 Predicted to enable ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system.

NR:

description
PREDICTED: RING finger protein 122-like isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252642.1 True 2090 mRNA 0.47 6 24268078 24274231

Neighbor

gene id symbol gene type direction distance location
gsk3bb si:dkeyp-80c12.7,gsk3b,LOC107729358,LOC107569048,LOC107675878,LOC107684292 coding downstream 26074 24222123 ~ 24242004 (-)
LOC122351487 LOC107675992,LOC107729366,LOC107569046 coding downstream 99442 24164545 ~ 24168636 (-)
LOC122330280 zgc:154142,LOC107676135,LOC107594422 coding downstream 166789 24091408 ~ 24101289 (-)
LOC122348966 LOC107675992,LOC107569046,LOC107729366 coding downstream 229422 24032892 ~ 24038656 (-)
neurl1aa neurl1,neurl1aa,LOC107676877,LOC107746052,LOC107746293,LOC107692176 coding downstream 1064942 23152502 ~ 23203136 (-)
LOC122351310 LOC107675897,LOC107574145,LOC107684327,LOC107706793,LOC107729342,LOC107684326 coding upstream 1498 24275729 ~ 24278863 (-)
zp3c NA coding upstream 7658 24281889 ~ 24284486 (-)
LOC122341589 LOC107729348,LOC107676039,LOC107729349,LOC107578077,LOC107729356,LOC107577678 coding upstream 10389 24284620 ~ 24291130 (-)
pkd2 LOC107675808,LOC107729350,LOC107684281,LOC107583176,LOC107594434 coding upstream 39080 24313311 ~ 24323076 (-)
aimp1a aimp1,LOC107594432,LOC107729369,LOC107675933,LOC107684278,LOC107757008 coding upstream 124629 24398860 ~ 24409528 (-)
LOC122350488 NA non-coding downstream 90429 24175891 ~ 24177649 (-)
LOC122351911 NA non-coding downstream 206866 24058013 ~ 24061212 (-)
G5568 NA non-coding downstream 531185 23735976 ~ 23736893 (-)
G5583 NA non-coding downstream 532475 23733174 ~ 23735603 (-)
LOC122346633 NA non-coding downstream 554621 23708413 ~ 23713457 (-)
G5763 NA non-coding upstream 226162 24500393 ~ 24501238 (-)
LOC122362739 gstcd,LOC107757010,LOC107684312,LOC107729368,LOC107676029 non-coding upstream 228742 24502973 ~ 24508467 (-)
G5769 NA non-coding upstream 277352 24551583 ~ 24551880 (-)
G5780 NA non-coding upstream 286608 24560839 ~ 24561453 (-)
G6019 NA non-coding upstream 414947 24689178 ~ 24689696 (-)
atp5md taf5,LOC107676012,LOC107583167,LOC107574147,LOC107684290 other downstream 16839 24193721 ~ 24251239 (-)
si:dkeyp-80c12.8 NA other downstream 46632 24218594 ~ 24221446 (-)
G5624 LOC107675992,LOC107569046,LOC107729366 other downstream 96016 24032863 ~ 24172062 (-)
LOC122351900 tcf7l2,lef1,LOC107750316,LOC107757012,LOC107684275,LOC107676173,LOC107594427 other downstream 185202 24061440 ~ 24082876 (-)
LOC122350023 LOC107675992,LOC107729366,LOC107569046 other downstream 226120 24037063 ~ 24041958 (-)
LOC122341607 LOC107729348,LOC107676039,LOC107578077,LOC107729356,LOC107594453,LOC107676194,LOC107729349,LOC107706808 other upstream 17200 24291431 ~ 24297591 (-)
G6056 NA other upstream 594210 24868441 ~ 24870465 (-)
G6073 NA other upstream 698260 24972491 ~ 24973371 (-)
G6074 LOC107583193,LOC107757030,LOC107747412 other upstream 714545 24988776 ~ 24993345 (-)
G6078 kif16b,LOC107747412,LOC107583193 other upstream 720252 24994483 ~ 24995820 (-)

Expression


Co-expression Network