LOC122356343 (LOC107571418)


Basic Information

Item Value
gene id LOC122356343
gene name LOC107571418
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28376999 ~ 28382875 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254998.1
TAACCAGCAAATTGCGGTTAAAAGAGTCTTGTGAGAAATCACCAACGGGAATTTTCCCAAAAGgagaagtgaagaaaaaaacaggcaCTGTTCTGGGGCTGTAAACCTTTGAAACTACATTTAAACAGATCCATATTTCATGGAAAAAGAAATGGAGGGCACCTCTAAAATGAGTTCTCCATCTCCTGAATCAAGCAGTGCGTCATTAAAGAGTGATCGGCCTTTGATGAACCATCTCCTTAAATTGAGTGATACAATGACCTCTGACACCAGCAGGAGACAGAGATCGGAGTCTCCAGAacccagctgtgtgtctctgAAGAGTAACAGATCCATGGATCATCCATTTCAATTTAGTGATGGACCGGTGAACTCTGACCTTCTAAAGGAAATATATGAGCCAATCAGATATTTGCCATCCTCTACATACCATGATCAGACTCATATCAGAGAGGAAAGAAGTGAATCAATCCTGCATACACATATACTACAGACTGGAAACCATCAGCGTGCCAAAGACCAGCACAAAATccacatgaaaaaaatgtatgagaGATTATTTGAAGGAACCAAAGTACAAGAGAATGAAACGCTTCTGAACAATGTTTACACACAACTCTGCATTACAGAGGGAAACAGTGAAGGTgtgaatgaagaacatgaggttttacacacagagaaaacatcCAGAACAAAACACTCACAAGACACTACAATCTACTGCAATGACATCTTTAAAGCTTTACCTGAACCAGGATTTGAGGAGAAAGACCAGATCaagactgttcttactaaaggcatCGCTGGAATAGGAAAAACCGtatctgtgcagaagttcattctggactgggctgagggaaaagccaatcaggatgtagattttatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttcaagatctggactcaaagatttatgaggagtgtaaagttgtgttcatctttgatggtctggatgaaagTAGAATCCCACTAATGTTTTCAGGTGATCAGAAAGTTTGTGATGTGACTGAGACTTCATCAGTGAGTGTGTTGATGTTAAACCTCATGAAAGGAGAGCTGTGTTCTTCTGCTCtgatctggatcacctccagaccagcagcagccaatcagatcccctCCAAATACATCAACCGTTTGACAGAAATTCAGGGATTCACTGAAcctcagaaggaggaatatttcaggaagaggatcagtgaccagcatcaagccagcagaatcatctcacacatcagaagagcaagaagcctccacatcatgtgtcacatcccCGTCTTTTGCTGGATCTCATCCACTGTGCTTCAGAAGCTCCTGGAAGAAGATCTGAATGTAGAAATCCCTCAAACTCTaactgaaatgtacatccacTTCCTGCTGATTCAGATCAAAATGAGGAACCAAAAGTATGAAGAAAGAGATCCAGAGAAACTCTTGCAGTCCAACAGAGAAGTGATTGTGAAACTTGCTGAAGTAGctttcaaacagctgatgaagggTAATGTGATGTTCTATGAGGAAGACCTGATTGAGAGCGGCATAGACATCACTGATGCCTCAGTGTTTTCTGGAATTTTCACTGAGATCTTTAAGGAGGAGTCTGTAATTAATCAGAGGAAAGTCTACAGCTTCATTCACCTGAGCGTTCAGGAATTTCTCGCTGCATTCTATGTTTTTTACTTTCATGTGAGTGTAACTATGCAGGGACTTAGGAATTTTGCTTTAGTACAACATTTGCTCAAAACTGCAGTAGATGAAGCCCTTCAGAGTGAGAATGGTCACCTGGATCTGCTCTTGCGGTTCTTGCTTGGTGTCTCACTGGagtccaatcagagactcttacaggatctactgacacacacagagaacagctCAGAGAGCATCAGGAGAACCACGCAGTACATTAAAGAGAAAATCAGAGATGGACATGACCTCTCCACTGAAAGATCCATCAATCTTTTCCACTGTCTGCTGGAAGTGAAAGATCAGACTCTGTCCAGAGAGATTCAGGAGTTTGTGAAATCAGACAAATACTCAGAGAAGAAACTTTCTCCTGCTCACTGCTCAACAATCTCCTACATGCTTCAGATGTCAGAGGAGCCACTGGATGAGCTGGATCCAATTAAATACAACACATCAGATGAGGGGAGAAGAAGACTGATACCAGCTGTGATCaactgcagaaaagctctTGTTGCTGGCTGTAATCTCAGTGATCAGGATTGTGAAACTGTGTCATCAATTCTACAATcttcaaactctgtcctgatagagctggatctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgatggactgaagagtccaaactgtcagcTGGAGATACTGAGGTTGTCAGGCTGTATGGTGACGGAGGTAGGCTGTGGttatttgtcttcagctctgagttcaaacccctcacacctgagagagctggatctgagctacaatcacccaggagattcaggagtgcagctgctcaaacacaaactggaggatccaaactACTCACTGGataaactcaaTATGGAATATGGGGGACATTTAAGGGTCAGAGCAGGACGGAGAAAATATGCCTGTGATCTCACACTgaatccaaacacagcacacactcaaCTCATTCTGTCTAAAGACAACAAAGAAATAACGTCTGTAAAAGATCATCAGTCGTATCCTGACCATCCAGACAGGTTTGAGTTCTTTGAGCAGGTTTTGTGTCGAGAGAGTCTgactggacgctgttactgggaggttAAATGTAAAGGCTCAGGTCATATTGCAGTAACATACCAggaaatcaaaagaaaagaagggaGTGACTGTCGGTTTGGACGCAATGACAAGTCCTGGAGTCTTTTCTTTTGTGATAAGCTGTACACTTTTTGGAACAATGACAAGGACACTAACATTCCTTCTTCACCCTCCTCTAATAAACTAGGAGTGTATCTGGATTGGTCGGCCggctctctgtccttctacagtgtctctgacacacacacactcacacacttacacacattcaaCACCACGTTCACTGAACCCCTCTACGCTGGGTTTACAGTGTATCCTGATTCCTTAGTGTCTCTAAATAAGACAAACAACAGAGACTCATTTTAAAACTTCCATCTCGCAAATGTAAgcttacataaaaacacaaataattattGATATCTGAACAACAATCTCAAATTGCAGAATCAACAGTCTATCAATGATTTATAATGATTGGCAGAATACAGTTTAAACTGGCGGTTCTGTTCTGGACAGATTAGCATGGACAAGAGCAGCAATAACCCACCAGGGTAACATCACTGTGAGGGTCTGCGTGTATGCTGTGAGGTGCttccacacaaaaaagaaaaaatgattaaaatgttgtttccaAATCAAA

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254998.1 True 3485 mRNA 0.42 8 28376999 28382875

Neighbor

gene id symbol gene type direction distance location
LOC122360989 NA coding downstream 52983 28321180 ~ 28324016 (-)
LOC122360275 NA coding downstream 56037 28314466 ~ 28320962 (-)
LOC122360767 LOC107723996 coding downstream 98390 28273718 ~ 28278609 (-)
LOC122349362 NA coding downstream 103450 28271569 ~ 28273549 (-)
LOC122350202 NA coding downstream 156652 28218282 ~ 28220347 (-)
LOC122349470 LOC107578851,LOC107748053 coding upstream 103893 28486768 ~ 28488502 (-)
LOC122349476 NA coding upstream 110821 28493696 ~ 28496147 (-)
LOC122349482 LOC107578851,LOC107748053 coding upstream 113395 28496270 ~ 28506538 (-)
LOC122356751 zgc:194906,LOC107575333,LOC107739961,LOC107576777,LOC107565530,LOC107571418 coding upstream 202942 28585817 ~ 28611362 (-)
LOC122349500 NA coding upstream 215143 28598018 ~ 28603208 (-)
G7480 LOC107724128,LOC107574374,LOC107571134,LOC107742984,LOC107717634,LOC107574376 non-coding downstream 91665 28264397 ~ 28285334 (-)
G7238 NA non-coding downstream 137304 28238856 ~ 28239695 (-)
G7182 NA non-coding downstream 262072 28109682 ~ 28114927 (-)
G7157 NA non-coding downstream 412365 27961915 ~ 27964634 (-)
G7156 NA non-coding downstream 419000 27956825 ~ 27957999 (-)
G7516 NA non-coding upstream 25367 28408242 ~ 28410308 (-)
LOC122326209 NA non-coding upstream 32077 28414952 ~ 28417571 (-)
G7521 NA non-coding upstream 48448 28431323 ~ 28431628 (-)
LOC122326719 NA non-coding upstream 105706 28488581 ~ 28489509 (-)
G7535 NA non-coding upstream 288046 28670921 ~ 28672634 (-)
G7475 NA other downstream 128476 28244128 ~ 28248523 (-)
nxnl1 nxnl1,LOC107748002,LOC107713785,LOC107571423,LOC107659782,LOC107690637 other downstream 153752 28220899 ~ 28223247 (-)
LOC122349330 LOC107571875,LOC107574524,LOC107703776,LOC107573813,LOC107707718,LOC107732931,LOC107703675,LOC107703672 other downstream 300354 27891901 ~ 28076645 (-)
G7105 epn3,epn3b,LOC107707724,LOC107571871,LOC107703747,LOC107745640,LOC107574648,LOC108411852 other downstream 437547 27754782 ~ 27939452 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other downstream 991920 27375317 ~ 27385079 (-)
G7508 LOC107739967,LOC107747700,LOC107716241,LOC107572978 other upstream 8164 28391039 ~ 28392053 (-)
G7515 slc27a1b,slc27a1,LOC107662711,LOC107560569,LOC107739969,LOC108413363 other upstream 23307 28406182 ~ 28446591 (-)
G7527 LOC107575698,LOC107577169,LOC107575696 other upstream 140830 28523705 ~ 28525551 (-)
LOC122324333 NA other upstream 560113 28942988 ~ 28944618 (-)
G7563 ubl5,pin1,LOC107727173,LOC107685032,LOC107571794,LOC107662743 other upstream 666868 29049743 ~ 29132092 (-)

Expression


Co-expression Network