LOC122356986 (si:dkey-222h21.3,LOC107659785,LOC107571418)


Basic Information

Item Value
gene id LOC122356986
gene name si:dkey-222h21.3,LOC107659785,LOC107571418
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28634924 ~ 28643497 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256174.1
tgtgtgtgtgtgtgtgtttcaaaatACCGTGCAGTAGGCTGTTACTGCAGAATATTTCACTTTCTACTTCCAATGAAGTAAAGTACCCTTATTACCGTGTGCAGTGCTCTTCGAGTATGTCGGAGTATACTTAGTGTCGAGTGGAACACGCTCCAAAGTCAAACACGGAAGAGAGACTCGTTCAGAGACCTAAAATGAAACTAACCCCGTGTGCTTAAATCCGAAGACTATATTCCGCGATAATTACCAGATAAAGGTCTTAAATCAGGTGAAACAGGAGAGGAACATGAGTCACTGCAAGGAGACAGAGGAGAAGCAAGAAGAGCTTGGTGCAGAACCCAGCTGTGTGTCAATGAAAAGTGATCGGTCCTTGAACAAACCAATTGATTTCAGTGATGGAGCTGTGGCGTCTGACCCCAGATCTGTGCCATCATCTACATTCCACTGTCAGACCCACATCAGGGAGGACAAACCTAAAGCAGTCCTGCAGAAACATATACTGGAGACAGAAAACCTGCAAAGACTCAAAGACCAACACAAAACCAGTATAAGGATCAAGTATGAGAGATTATTTGAGGGATTGAAACTCCAAAAGAATGAAACCCCCTTGAACAGAATCTACACACAGCTCTACATcatagagggagagagtgaaggagtGAATAAAGAACATGAGGttttacagatggagaaaacagCCAGAACAAAACACTTACAAGACACTCCAGTCTACTGCAATGACATCTTTAAAGCCTCACCTAAACCAGGATGTGAGGAGAAAGACCAGATCAAGACTGTTTTTACTAAAGGCATCGCTGGAATCGGAAAAaccgtctctgtgcagaagtttaTTCTGGACTGGGCTGAGGGAAAAAAcaatcaggatgtagattttatgtttgtgcttccatttcgagagctgaacttgatccgagatcatcagtacagtcttcacagacttctgctGGACTTTCATCCAGAACTTCAAGATCTGGACTTAAAGATTTATGAGGAGTCtaaagttgtgttcatctttgatggtctggatgaaagcagaatcaccctgatgttttcagatgatcAGAAAGTTTGTGATGTGACTGAGACTTCATCAGTGAGTGTGTTGATGACAAACCTCATGAAAGGAGTGatgcttccctctgctctcatctggatcacctccagaccagaagcagccaatcagatcccctCCAAATACATTAACCGTCTGACAGAAATTCAGGGATTCACTGATcctcagaaggaggaatatttcaggaagagAATCAGTGACGAGCATCAAGCCAGCAGAATAATCTCACACATCAGAAGAGCAAGAAGCctccacatcatgtgccacatccctgtcttctgctggatctcatccaCTGTGTTTCTGAAGCTCCTGAAAGAAGATCTGAGTGCAGAAATccctcaaactctgactgaaatgtacatccacTTCCTGCTGATTCAGATCAACATGAGGAACCAGAAGTATGAAGAGAGTGATCCAGAGAAACTCCTGCAGTCTAACGGAGACGTAATTGTGAAACTTGCTAAAGTGGCTTTCAAACAGTTGATGAAGGGCAATGTGATGTTCTATGAGGAGGACCTGATTCAGAGCGGCATAGATGTCACTGATGCCtcagtgtattctgggatttgCATTGAGCTTTTTAAGGAGGAAACTGTGATTCTTCAAAGGAAAGTGTATAGCTTCATTCATTTGAGCATTCAGGAGTTTCTCGCTGCTTTCTATGTGTTCTactattatgtaataaaacatattgATACATTGCAGTTTAGTGATATTATTCATAACCTGCATAGAGATGCCGTAGATAAGGCCCTCATGAATGAGAACGGACACCTGGATCTGTTCCTGCGGTTCCTGCTGGGCGTCTCACTGGagtccaatcagagactcttacaggatctactgacacacacagagaacagctCAGCGAGTATCAGTAGGACCACGCAGTACATTAAAGAGAAGATTAAAGATGGACATGACCTCTCCACTGAACGATCCATCAATCTTTTCCTCTGTCTGCTAGAAGTGAAAGATCAGACTCTGTACAGAGAGATTCAGGAGTTTGTGAAATCAGACAAACACTCAGAGAAGAAACTCTCTCCTGGTCACTGCTCAACAATCTCCTACATGCTTCAAATGTCAGAGGAGCCACTGGATGAGCTGGACCTCAAGAAATACAACACATCAGATGAAGGGAGAAGAAGAATGATACCAGCAGTGCTAAACTATAGAAAAGCCCTTCTTACTGGCTGTAATCTAGGTGCTCAGTCCTATGAAATTGTGTCATTAGCTCTTCAGTcttcaaactctgtcctgagagagctggatctaaGTAACAATGACCTCCAGGATTCGGGattgaagctgctctctgatggactgaagagacCAAACTGTCTGCTCGAGATACTGAgGTTGTCAGGTTGTATGGTGACAGAGAAAGGCTGTGGttatttgtcttcagctctgagttcaaacccctcacacctgagagagctggatctgagctacaatcacccaggagattcaggagtgcaGCTGCTCAAACACAGACTGGAGGATCCAAACTACTCGCTGCAGATACTCAAtTTGGACCATGGAGGACATATCAGATTGAAACCAGGACTGAGAAAATACGCCTGTGATCTCACaatggatccaaacacagcacacactcgaCTCATCCTGTCTGAAgactacaaaaaaacaacatgtctGAAAGATCAgccgtatcctgatcatccagacagattcgAGAACCAGGAGCAGGTTCTGTGTAGAGAGAGTCTCactggacgctgttactgggaggttAAATGGGAAGGCTCGGGTCATGTAGCGGTGTCATATAAAGGAATCAACAGGAAAAGTGGGATTGACAGTTGGTTTGGTCTCAATGAAATGTCCTGGAGTATGTACTGTTCTGATACAACTTATACTGTCtggtacaataataataacaaagacGTATTTGGCCCTTCATCCCGCTCTAATAGAGTAGGAGTTTATCTGGACTGGTCGGCCggctctctgtccttctacagcgtctctgacacacacacactcacacacttacacacattcaaCACCACATTCACCGAACCCCTCTACGCTGGGTTTGGGGTTTATCCTCAAGCTTCAGTGTCTCTGTGTCAGATTTAACAACCTCTTGTGAGGATCAACAGAGACACATACAGAATTTATGATTCACACTTTCactgtgtttttgcatttttcagtttaGCTAGTTTCAGTAATGCatatgtgttcatttaaatcTGTTCTATATTAATTctataatattattagaaacacatttttaattattggaaAACGCATTTGGGtgtacaattatatttttaataactttaagtCATATGTATTTCTAAAATGAGCTCACTATGAAGCCTTGAGAGCATGTGACATAATATGTGCTTTTGTCTCCTTTAGTACTTAGTTATCAAAAATGTGAAGGACttgtataataaatgaaattttacaGGTTGAAGTGGATTTCATTTGACATCACTAAAAAATGTGTTGGTTAaacattactattatatttttgaaggcaaattttctttttttaattttataaaagacGCTACTCCATAGAGGGTTAAATCTTAAATATCTAACATGTTTGATATAATCGGGGCAGACCTGATTTGTTGTTAGTTTGTTGTAATGTGCTCACATGCAATTCTTGTTTTCGTATTAAATTGATATGTAGTAAGATCTAAAAGGCTTATGTAAATCCACTCTGGTGACTTACGTGTGGAGCTCCTGTTTgctatacataataaaacaagtttttacagtaaaa

Function

symbol description
si:dkey-222h21.3 Predicted to be involved in intracellular signal transduction.

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256174.1 True 3869 mRNA 0.41 7 28634924 28643497

Neighbor

gene id symbol gene type direction distance location
LOC122361856 LOC107575100 coding downstream 8132 28614050 ~ 28626792 (-)
LOC122349510 LOC107577948 coding downstream 18023 28604870 ~ 28616901 (-)
LOC122356751 zgc:194906,LOC107575333,LOC107739961,LOC107576777,LOC107565530,LOC107571418 coding downstream 23562 28585817 ~ 28611362 (-)
LOC122349500 NA coding downstream 31716 28598018 ~ 28603208 (-)
LOC122349482 LOC107578851,LOC107748053 coding downstream 128386 28496270 ~ 28506538 (-)
LOC122356692 si:dkey-222h21.3,LOC107659785,LOC107571418,LOC107576777 coding upstream 2164 28645661 ~ 28652183 (-)
LOC122356533 LOC107571418 coding upstream 10512 28654009 ~ 28663246 (-)
LOC122362864 LOC107739961,LOC107574374,LOC107742984,LOC107717634,LOC107574376,LOC107725412,LOC107724128,LOC107576777 coding upstream 30936 28674433 ~ 28676825 (-)
LOC122355940 NA coding upstream 165715 28809212 ~ 28841535 (-)
LOC122349524 LOC107572981 coding upstream 249644 28893141 ~ 28898735 (-)
LOC122326719 NA non-coding downstream 145415 28488581 ~ 28489509 (-)
G7521 NA non-coding downstream 203296 28431323 ~ 28431628 (-)
LOC122326209 NA non-coding downstream 217353 28414952 ~ 28417571 (-)
G7516 NA non-coding downstream 224616 28408242 ~ 28410308 (-)
G7480 LOC107724128,LOC107574374,LOC107571134,LOC107742984,LOC107717634,LOC107574376 non-coding downstream 349590 28264397 ~ 28285334 (-)
G7535 NA non-coding upstream 27424 28670921 ~ 28672634 (-)
G7541 LOC107575099,LOC107576344,LOC107574587,LOC107576324 non-coding upstream 99947 28743444 ~ 28807706 (-)
G7547 NA non-coding upstream 129857 28773354 ~ 28774166 (-)
G7550 si:dkey-222h21.2,si:ch211-114l13.4,si:ch211-236p5.3,LOC107729025,LOC107575333,LOC107574376,LOC107575359,LOC107659785,LOC107576777,LOC107575507 non-coding upstream 146969 28790466 ~ 28800856 (-)
G7551 NA non-coding upstream 149147 28792644 ~ 28801665 (-)
G7527 LOC107575698,LOC107577169,LOC107575696 other downstream 109373 28523705 ~ 28525551 (-)
G7515 slc27a1b,slc27a1,LOC107662711,LOC107560569,LOC107739969,LOC108413363 other downstream 188333 28406182 ~ 28446591 (-)
G7508 LOC107739967,LOC107747700,LOC107716241,LOC107572978 other downstream 242871 28391039 ~ 28392053 (-)
G7475 NA other downstream 386401 28244128 ~ 28248523 (-)
nxnl1 nxnl1,LOC107748002,LOC107713785,LOC107571423,LOC107659782,LOC107690637 other downstream 411677 28220899 ~ 28223247 (-)
LOC122324333 NA other upstream 299491 28942988 ~ 28944618 (-)
G7563 ubl5,pin1,LOC107727173,LOC107685032,LOC107571794,LOC107662743 other upstream 406246 29049743 ~ 29132092 (-)
LOC122362981 LOC107662727,LOC107560596,LOC107685031,LOC107722572 other upstream 424485 29067982 ~ 29152545 (-)
LOC122325037 sh2d3a,LOC107662707,LOC107685029,LOC107560576,LOC107727164 other upstream 458189 29101686 ~ 29112734 (-)
G7569 gtf3c1,LOC107678316 other upstream 658310 29301807 ~ 29310598 (-)

Expression


Co-expression Network