CI01000000_10544400_10562125 (GPC4)


Basic Information

Item Value
gene id CI01000000_10544400_10562125
gene name GPC4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 10544322 ~ 10563078 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_10544400_10562125.mRNA
ATGAACAAGACGCCAGTTGTGGTGGTTTCATACTCGTTGAGTGAACCAAAGTATTTAGACTTGAATAAATAAAGATTTAGTGCTAAAGGTGACTATTTGATGATCTGGGTTTTTTTTGTCTTCAAAGGAATTATCATTTCAACCAAGTAAATTCAAAATATTTAATTTTGTTTAGTAAAATACTGGAATGTAAAATACTTTAGCTATAAGCGTCAATTTTTACTTTAATATGGAAAATCTTTCTCAGGCACTTCTGTAAAAAATTGAGTTTGATGCTAACAAGTTGTTGAGTGTTGAAACGACATTGAAATGGGCCATTTGAATTTTTATTTGTAGATTCTGACACAAAGAAGAATCATTATTACAGCATTTCATTACATCAGTCAATGAAATGACTTATGCACTTTTTTTTTTTCACCATTAAGTTTACAAAAGGGCATCTTGATATCCACAATGTTGCTTTAATTTTATATTGTCAGCAAAATCATTGCAAATATATTCAATATCCCACAGCCCTAGTGATTACCAAGAGTGTCTTTAAAAATATCTAATATTTTTTGGATCTTTTTGTTCTTGTAAAGCACTTTTGTGTGTTTTATAAACGCTTCAGAGGTGTTGCATGATGTCTGTCTTGTTGATATCAAGTCCCGTGTCCATTCAGGCTGTTAGACAGCTATTAGAGAGAAGGACGATTGTCAGGAGTCATTGTGAAAACGCTCCTTCCTCCACCCTGTATTCATGAGTCTGTAAATGAAGGATGGACAGTCCAAAGATAGCCTCAGGCCACACAGAGAGAGAAGGGCTGAGATCTGTCTTCATGCAGATGGTGTGAAGGCAGGAGAGTGCATGAGCAGGGACATGTCTGAACATGAAAGGCACATTTTGGTGGAGACAACCATATAATAGAAAGGCTATGATTTAGAAATCAAATATTTAGCTTTTATCTGTCTGAAATGCCTGCGCTTAATTTCACTCTGCCTTTTATCTCAACAATCTACTCTCATCTCAAAGCTTGTGTTAGTGTAAAGAAGGCTCTGGTGTTGGTTAGGTTCTCTCTCTCTCTCCAAATGCCCATATACAAAGAGCTGTCTGTTGGGCTGAGATATGATGTACAGGTCTTGTATGTACCTGATGCCAAGTGTGTGAAAATTGTGCCTCGATCATCCCTCACAGGAACATGCTGGCCTTCAAAACATGGAGATGAATGTATATGCGCATTGAGGAATGGCCTGAGAGCAGGGGTCTCTCATCGGTGTGCAGTATGCAATCCAGAGTGGCCAGTCTTGCTGAACAGCAGCAGGGGGGACCATCTGAAAGTGTGTCCTCAAGGTTTCTCCTGCTGTACTCTGGAGATGGAGGAGAAGTTGAGTCAGCAGAGCCGCACAGACCTGAAAGCACCCGTTCATCAGCTCAGCTCCAATCTACAAAACACCTTCACCCAGAGACACCGTCACTTTGACCTGCATGTGGCAGTGAATATCAGGCTAAGAGAGGGGGATCAGGTTTCCCCAGTGCAGGGCAGAGGGAGCATCCGAGCGGTTTTTAATGGACTCGACACAGTCGGTTTTCTGGCATGTTCTGCGAGAGCTGGGAGCATCTGTGCTGTGGGCCGGCAGGCTTTAAGCGAGAGGAGAAAGGTGATACAAAGGCAAAAAACAAATGGTGCACTTTGCGGGGCGAGCGTGTGTGAGCGCGGGAAGAGAGAGTTCTTCAGAGAGCTGTTGAACAATGCAGAGAAGTCTCTCAATGACATGTTCGTGCGGACCTACGGCTTGATGTACGTGAAGAACGCCGAGCTCTTTGAGCAATTCTTCCGCGACCTACGCCGCTACTACAGCCACGGGAGCAGCGCTGTCAACCTGGACGACATGCTAGCGGAGTTCTGGATGGAGCTTCTGGAGCGCATGTTCCGACTGGTCAATGTGCAGTATGAGTTCGGCGACTCGTACATGGAGTGCGTCAGCAGGCATATGGAGCAGCTCAAACCCTTCGGTGACGTTCCACGCAAGCTCCGCCTGCAGTTGACCCGTTCTTTCATCGCAGTCCGCACGTTCACCCGCGGCCTGGCGCTCATGCCCGAGGTGGTGGGCAAAGTCTCCACGGTAAGCGCCTCTCCGAGCTGCGTCCGTGCAGCTATGAAGATGTATTACTGTCCGTACTGTACCGGCCAGGTGGCGCTGAAGCCCTGCAAGAACTACTGTCTCAACGTTATGCGAGGCTGCCTGGCTAATCAGGCCGATCTGGACACAGAGTGGAATAACTTCCTGGATGCCATGTTGGGTCTCGCTGAGAGGCTAGAGGGACCCTTTAACTTTGAGTCTGTCATGGACCCCATAGATGTGAAGATTTCAGATGCCATCATGAACATGCAGGAGAACAGCATACAGGTCTCACAGAAGGTGTTTCAGGGTTGTGGGCAGCCCAAACCCAACATGGCTTTACGCACCCGACGCTCTCCTAAAGACTCAGGGTTCCCTGGGCGTTTCCGACCCTACAGCCCTGATGCCAGACCCACCACTGCCGCTGGCACCAGCCTGGACCGACTGTTGACGGATGTCAAGAAGAAACTGAAGCATGCCAAGAAGTTCTGGTCCACCCTGCCGGACACGGTGTGTGTTGGAGACCGGATTGCCAATGGTGATGAATGCTGGAATGGTACAGCCAAAAGCAGGTACGAATCTGTCGTCATGGGCAATGGCTTAGCCAATCAGGTGTCTAATCCTGATGTGGAAGTTGACATCACCAAACCAGACATGGTGATTCGGCGGCAAATAGCAGTGCTGAAGGAAATGACCAGCTGGCTTAAGGCTGCTTACACTGGCACTGACATCTCATTTGTCAATGAGGATGCCGGCAGCGGAGAGGAAAGCGGAAGTGGCTGCGACTCGCCCTCTTGCGACAGTGACGGCGACATCTACTTCTCCACCCCGGCGCCCGTTAAACCTCGCATCCTCAGTGTTCATCCCTCCAGCGGTACACGGTTGACACCTTGCAGCCTGGCACTGGTGGTGGCAGCGCTCCTGTTCACCCTTCACACGAGATAAGACCGGCCTAGAGAGGAAGAGGATGTGTGTTTGTACGAATTTGAACAAGAGAGCAGAAAACTGCCATAGGACATTAAA

Function

symbol description
gpc4 Acts upstream of or within several processes, including animal organ development; gastrulation; and post-anal tail morphogenesis. Predicted to be located in collagen-containing extracellular matrix and membrane. Predicted to be anchored component of plasma membrane. Predicted to be active in cell surface and synapse. Is expressed in several structures, including axial chorda mesoderm; blastomere; lateral line system; quadrate-anguloarticular joint; and tail bud. Human ortholog(s) of this gene implicated in Keipert syndrome. Orthologous to human GPC4 (glypican 4).

GO:

id name namespace
GO:0008104 protein localization biological_process

KEGG:

id description
K08110 GPC4; glypican 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_10544400_10562125.mRNA True 3122 mRNA 0.48 15 10544322 10563078

Neighbor

gene id symbol gene type direction distance location
CI01000000_10533216_10540624 HS6ST2 coding downstream 3354 10533134 ~ 10540968 (-)
CI01000000_10504203_10520863 MBNL3 coding downstream 23459 10504203 ~ 10520863 (-)
CI01000000_10481263_10483211 RAP2A.S, RAP2C, RAP2A, RAP2AB coding downstream 60728 10481089 ~ 10483594 (-)
CI01000000_10474520_10476010 NA coding downstream 68312 10474411 ~ 10476010 (-)
CI01000000_10468528_10473166 NA coding downstream 71156 10467552 ~ 10473166 (-)
CI01000000_10590812_10591914 NA coding upstream 26969 10590047 ~ 10592285 (-)
CI01000000_10612377_10662964 GPC3 coding upstream 49299 10612377 ~ 10662964 (-)
CI01000000_10722125_10723905 NA coding upstream 158978 10722056 ~ 10724052 (-)
CI01000000_10734747_10737823 NA coding upstream 171472 10734550 ~ 10737823 (-)
CI01000000_10745761_10748814 CAB39L1 coding upstream 182457 10745535 ~ 10751206 (-)
G8028 NA non-coding downstream 110036 10434021 ~ 10434286 (-)
G7946 NA non-coding downstream 173175 10369020 ~ 10371147 (-)
G8016 NA non-coding downstream 198826 10344942 ~ 10345496 (-)
G7924 NA non-coding downstream 322048 10221012 ~ 10222274 (-)
G7884 NA non-coding downstream 395242 10147499 ~ 10149080 (-)
G7968 NA non-coding upstream 22519 10585597 ~ 10589211 (-)
G7991 NA non-coding upstream 141821 10704899 ~ 10719278 (-)
G7985 NA non-coding upstream 209349 10772427 ~ 10774179 (-)
G7996 NA non-coding upstream 232282 10795360 ~ 10796229 (-)
G8080 NA non-coding upstream 352932 10916010 ~ 10916315 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other downstream 129809 10407395 ~ 10409950 (-)
G3931 NA other downstream 4140797 6157013 ~ 6403525 (-)
G3716 NA other downstream 4543553 6000407 ~ 6000769 (-)
G3650 NA other downstream 5003441 5540463 ~ 5540881 (-)
CI01000000_05465020_05466303 NA other downstream 5077806 5464058 ~ 5466516 (-)
CI01000000_10824957_10825464 MMGT1, TMM32 other upstream 261333 10824324 ~ 10825464 (-)
G8125 NA other upstream 477191 11040269 ~ 11040909 (-)
G8699 NA other upstream 2722246 13272585 ~ 13311429 (-)
G9036 NA other upstream 3163722 13726800 ~ 13727090 (-)
G9602 NA other upstream 3777924 14341002 ~ 14346534 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007949 gpc4 coding NC_007125.7 CM002898.2 31090151 ~ 31151148 (-)
bowfin (Amia calva) AMCG00021361 LOC106586057,LOC106612107,LOC105026369 coding CM030130.1 CM030130.1 15740735 ~ 15752170 (+)