LOC122358417 (LOC107721946,LOC107662706,LOC107560594)


Basic Information

Item Value
gene id LOC122358417
gene name LOC107721946,LOC107662706,LOC107560594
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29799978 ~ 29806220 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258250.1
GAAATGATGCAACAGAAGACACACTGAAAGATGTTTGAACAGGAAAAGGAAAGGACTTTGGACAGTTTTCCCAAGTTAATGAGAGAACCTCATATCCTTCTTATAAAACACTGTTAGCTGACTCAAGTTCTGCTCTCACCGAGCTCTAGAAGCCCGAAGCTCATTATACCATGTCTTATTCTTCAGTGTAACTTATAGTTACTTACTTTTTTCATCTCATACTTCATGAAGTTTCTCCTTTTACATTTTGGTTAAATTAAAAGGATTTGCAAAATTTGGACTTTTTGGACCGAAGGTTCCTCTgtgAAGTGAATCGTTGAAGGACGATGGCATGTGTTAAAGAGCTGCTCGTAAACCCACTGAAGGATCTGGTTAAGGATGATCTAAAAGAGTTTCGGTGGCACTTGAAGAATTATGAGGGTGTTTCAGCTTCTGAGATGGAGAATGCAGATGTCTTAGACACAGTAGATAAAATGATGGCACTTTTTGGAGAAAAAGAAGCTGTTGAGATCACAATTAACATCCTGAAGAAGATGAACCAGAATCTTCTGGTTGAAGAGATAGAGAACCAATACATCAGAGTCTCAACTCCTAAAGTTGCTGATACAGCTGATTACAGAGAGATCAGTCTCAGGCTGAAGAACAGATTACAAGAAGACTATAATCGGATATTGATTGGTAATTCACAAACGGGTCATCAGAAATATCTGAACGATATTTACACTGATCTATACGTGGTGGAGAACGAGACTGGAGGAATAGTGAATGACCACGAGGTGAGACGCATTCAACTGAACATCCACCACGTTACTGTGAAGAACACCACAATCTTGTGCAATGATCTGTTCAAAGTTCAGCATGATGATGGtcgacaaaacaaaaaagtgttaACAATGGGGATTGCTGGGGTGGGAAAAACTGTCTCTGTCAATAAGTTCATTCTTGACTGGGCTGAAGAAAAGGAAAATCAGGACATTCTCTTCATATTTCCACTCCCATTCCGTAGACTGAATATGATTACAAAGGACTGCAGTCTCATGGAACTGCTTCACGAATGCTTCTTTAGTGATCCTCAAGAGCTACCCTTACTTCCTAAGGATGACTGTAAGGTCATGTTCATTTTCGATGGGCTGGATGAATGTCGCTTCCCTTTGAGATTTCATGATTGTGATAGATTAATGGATGTGCATGAAAAAACAACTGTGAGTCAGATAGTAACAAACCTGATCAAAAGGAATCTGGTTTcgtctgctctcatctggatcacatccagaccagcagcagccggTCTGATACCCAGAGACCACATTGATCAGGTGACAGAAGTGCGAGGATTCAACGATGAGCAAAAAGAGcaatatttcatcaaaaacagcaGTCTTGAGCTTGCCGGAAACATCATGCGTCACATCAGAAAATCAAGGAGTCTgtacatcatgtgccacatccctCTTTTCTGCTGGATCTCTCTCACTGTTCTTCAGCCTCTGCTGGCTCGAGAGAGCAATGACAAAACTCCTACAACTCTCACAGAGATGTACACAGCCTTCTTGCTTTCTCAGAAGcaacagatggaaaaaaaatacagtgataaTCCTGAACTTAGGTTAGAAGCCAGATGCTTTGATAAGATTGTCCTGAAGCTTGGGAAACTGGCCTTTAAACAGCTGGAGAAAGGAAATCTGATTTTCTACAAAGAAGATCTTGAGGAGTGTGGACTAGATGTCAGTGAAGGGTCGGTGTACTCTGGATTATGCACTCAGATCTTTCAGGAGGAAAAGGCTGTTTCagccaaaaacatttacagcttTGTACATCTCAGTGTCCAGGAGTTCCTTGCTGCTCTCTATGTGTTTTTGATTTACAAAgatgagaaatcaaacctattttTTCACACATGGAAAAAGACAATATCATGGAAACTTTCTAACAGGCCACTGTTTCATCTTCTGAAGTCTGCAGTCAACAAGGCATTACAAAGTGAGAATGGACACCTGGACCTTTTCCTCCGGTTTCTCTTGGGTCTCTCATTGGAGTCCAATCAGAATGACTTGAAGGAACTGCTGCCAGAAGTGGAACTGAAaactatgaatattaaaaacaccGTTGACTATATAAAACAGACAATAGAGAAGGAGAAATCAGCGGAGAGGACAATCAATCTGTTCTTCTGCCTAAGTGAACTGAAATATGACTTTGTAAGTGATATCCAGAAGAACCTGAGCTCTGGAAATCTTTCAGCACAGAATCTGTCCTCTGCTCAGTGGTCAGCTCTGGTGTATGTGCTGCTGATGTCAGAAAGCACTCAAGATAAGTTGGAACTGCAAAAATACAGAAGATCTGAAGAAGCACTGATGAGAATGTTGCCAGTGATCAAAAACACAAGAAGGGCACtGCTACAGTCCTGTAATCTCACTGTTGAGTGTTGTGGGAGTTTGTCGTTGGTGTTACAGTCCTCTATCCTGAGGGAGCTGgatctgagtaacaatgacctgcaggattcaggagtgaagctgctctccgatggactgaagagtccaaactgtcagcTGCAGATACTGAGGTGA

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258250.1 True 2567 mRNA 0.41 4 29799978 29806220

Neighbor

gene id symbol gene type direction distance location
LOC122324192 zgc:92827,LOC107758210,LOC107665919,LOC107758399,LOC107573835,LOC107668524,LOC107573875 coding downstream 7741 29786585 ~ 29792237 (-)
ears2 ears2 coding downstream 205151 29589963 ~ 29594827 (-)
wfikkn1 wfikkn1,LOC107678954,LOC107758378 coding downstream 276735 29519894 ~ 29523243 (-)
zmp:0000001082 LOC107572597,LOC107755319,LOC107678952 coding downstream 281102 29502505 ~ 29518876 (-)
LOC122349546 LOC107678949 coding downstream 323897 29472300 ~ 29476081 (-)
LOC122363120 LOC107722580 coding upstream 367 29806587 ~ 29808583 (-)
LOC122324036 LOC107571898,LOC107659785,LOC107659779,LOC107576778,LOC107571412,LOC107574527,LOC107675009 coding upstream 3154 29809374 ~ 29811519 (-)
LOC122357555 sh2d3a,LOC107685029,LOC107662707,LOC107560576 coding upstream 16037 29822257 ~ 29832148 (-)
LOC122349594 si:ch211-15j1.5,LOC107574374,LOC107576777,LOC107725412,LOC100334101 coding upstream 39405 29845625 ~ 29848380 (-)
LOC122351861 primpol,LOC107656685,LOC107702393,LOC107750460 coding upstream 349489 30155709 ~ 30165350 (-)
G7675 cdc37 non-coding downstream 218851 29524195 ~ 29581127 (-)
G7686 NA non-coding downstream 246392 29522899 ~ 29553586 (-)
G7694 NA non-coding downstream 250776 29547872 ~ 29549202 (-)
G7683 LOC107739936,LOC107690077,LOC107566820 non-coding downstream 299281 29496887 ~ 29500697 (-)
G7654 LOC107662685 non-coding downstream 325127 29470716 ~ 29474851 (-)
G7751 NA non-coding upstream 80060 29886280 ~ 29886672 (-)
G7755 NA non-coding upstream 108448 29914668 ~ 29915054 (-)
G7761 NA non-coding upstream 212063 30018283 ~ 30018557 (-)
G7764 LOC107691293 non-coding upstream 226350 30032570 ~ 30037959 (-)
LOC122351377 NA non-coding upstream 291638 30097858 ~ 30099331 (-)
G7648 LOC107662685,LOC107678949 other downstream 323640 29426098 ~ 29476338 (-)
G7655 LOC107662685 other downstream 324590 29452759 ~ 29475388 (-)
LOC122354733 LOC107678949,LOC107566822,LOC107713175,LOC107662686,LOC107758373,LOC107574162,LOC107662685 other downstream 365765 29411107 ~ 29434213 (-)
G7569 gtf3c1,LOC107678316 other downstream 489380 29301807 ~ 29310598 (-)
LOC122362981 LOC107662727,LOC107560596,LOC107685031,LOC107722572 other downstream 647433 29067982 ~ 29152545 (-)
G7816 NA other upstream 385981 30192201 ~ 30197848 (-)
G7868 NA other upstream 824014 30630234 ~ 30630505 (-)
G8009 NA other upstream 1137278 30943498 ~ 30957486 (-)
G8091 abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823 other upstream 1725849 31532069 ~ 31537416 (-)
G8089 abca1a,LOC107571910,LOC107703854,LOC108413301 other upstream 1743966 31550186 ~ 31554035 (-)

Expression


Co-expression Network