LOC122358964 (LOC107560570,LOC107742521,LOC107571120,LOC107746494,LOC107668675)


Basic Information

Item Value
gene id LOC122358964
gene name LOC107560570,LOC107742521,LOC107571120,LOC107746494,LOC107668675
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29062167 ~ 29065547 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259012.1
ACTCCTACTACTATTGAGAAAACACGACAGGCTCCGGAAGGATTTGTCTTGTTTCTAGATCACGAAATCAACGATGTCGcccaaaaagtgtgtgtttggttgCGAGGGGAAGCTGTCCTTGTTCAGATTCCCGCCGAACCCCGCGCTGAGGGAGCAGTGGACGCGCTTCGTGTTTCCCGCGCAGCGGCGCACATGCGATAACTTGTTCGTCTGCTCCCGACATTTCAGCGACGACTGCTTTATAAACAAGGCCCAGCTCGACGCGGGGTTCGCGGAGCGTTTGATTCTGAGAGATGGCGCGATCCCAGCAATAAAAGATCCAGAGCACGAGCCGAAAGCGCGGGCGATGTTGATCATGGAAGCTCAGGTGGATGTGGTCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAggatttgatcacagaaatctGTCAGCTGAAGAAAGAGGTGGCGTCACTGGAGGAGAagctgagagaaagaggagacaAACTCAACAGAGAGGATGTGGAGAAGGTTTCGGTGCGTGTGACTGATGGGACAGAAGATCCAGTCTGGAGCGTCAGAGATCGGAGATCCAGAGACACACAGGACTCAGAGCTCAGCCTCACTTTACTCTGTTATACTGACGCTCAGGATCATGAATCCACCGATCAAACCTCCGACTGTAACGCTGGAGAACAGCAGACGCTGAAGATGTGCTCCGTCAAACTGGTGGACTGCAGGAACCTGATCCAGAGCAGAGAGGAAGAACACAGCAACGAGGAGGAGCaggatgaagaagaggaggagaattATGCATATGACGACGATGATGAAGATTTCATTCCTTCAGATGATGACGAGGATGGTTCATATTCTGCCACGGATGAAGAAACGTTCTCGACCTCAAAAGACCAGCTGAAGAGTTTCTCCTGCAGCACCTGTGGAAGAACGCTGAGTTCACAGGGTCATTTAGAGAGACACGAGAGAACACACGCAGAACAGGAAGACTTCAGCTGCAGGAGATGCAACGTCAGCTTTCCTACCGCAGAAGAGAGGAGACTTCATTCAAAAGAGCACAGCGTGAAGAAGGAGTTTCACTGCGGGAAGTGCGGGAAGGTTTTATTCACCACTGCTCATAATATGAGAGCTCACACAAAGAGACACGATGAAAAGTCCTTCCGCTGCAGCGAATGTGACAAGTGTTTCAGCACCAAAGCCAACCTCGATGTTCATAAGAGGATCCACACGGGAGAAAGACCTTACGAGTGTCCTCACTGTGAGAGAAGATTCATGTGCGGATCTCAGCTAAAGACACACGTGCGTTCACACACCAACGAGAGGCCGTATCAGTGCAGTGAATGTGGGAAAACCTTCACAAACTCGAGCTATCTGAAGCTGCACCAGAAAATCCACTCTGATGAGAAACCGTTTCAGTGCAAGCACTGCGACAAGCGCTTCCGCCAGAGACCTTCTCTGGTTTGCCACGAgaggattcacaccggagagaaaccgtaccTGTGCTCCTACTGCGGGAAGACCTTCGCCAAATCAAATTCTTTGGTATTTCATAAGCgagtccacaccggagagaaaccgtatcTGTGCGCCTACTGCGGGAAGAGCTTTGCCAGACCGAACTCTCTCACGGTCCATAAGAgagtccacaccggagagaaaccgtatcACTGCGGCGTCTGCGGGAAGAGTTTCCGTAAACACACTAAATTACAAAACCACAAGAGGATTCATACTGGAGAAAGACCGTTCAAATGCTCGCAATGCGGCAAGACGTTTGCTCAGTCAAGCAACCTGAAGGTCCATCGGAGAGTCCATACAGGAGAGAAACCTTACTCCTGCTCCCTCTGCGGAGAGAGATTCGTTTATTTAGGTACTTTTCAGATCCACCAGAACAAACACGCTGAAGATCAAACCGCTCCACAATCAAAAATATGACTTGGGTCAAAACTCTTTGTTAGAATTTTAACTTgcatcaattttaatttaaagtcatGTGACATTTTGctcatgtacattttttttttccaagtacagaataaaaatttgGACCGATCATCTAAAGTCTGTTTGTTAATAGAGCTATTAAATGAGTAAAACTTTAGCATAAATATTGTACTCACGAACTCGAAAATCAGTCAaggatgtaaataaatgaagccgATGATTagaaagctcatttatttttgcatagtgAAATTACTTCAATAAATTGCCCCCATATTTTC

Function

NR:

description
PREDICTED: zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259012.1 True 2238 mRNA 0.47 4 29062167 29065547

Neighbor

gene id symbol gene type direction distance location
dnm2b dnm2,dnm2b,LOC107742527,LOC107571132,LOC108258735,LOC100701110 coding downstream 493 29050774 ~ 29061674 (-)
LOC122323133 LOC107571137,LOC107668677,LOC107662732,LOC107560590,LOC107719145,LOC107742532,LOC107560573 coding downstream 18876 29037722 ~ 29043291 (-)
LOC122360916 LOC107668674,LOC107571136 coding downstream 100317 28956307 ~ 28961850 (-)
LOC122357989 LOC107571123,LOC107709529 coding downstream 120253 28929703 ~ 28941914 (-)
LOC122359935 LOC107709532,LOC107571128,LOC107674943,LOC107662715,LOC107719079,LOC107560584 coding downstream 133587 28924616 ~ 28928580 (-)
LOC122362918 LOC107662727,LOC107722580 coding upstream 7188 29072735 ~ 29074696 (-)
LOC122356586 LOC107721946,LOC107662706,LOC107560594 coding upstream 10872 29076419 ~ 29085458 (-)
LOC122322914 LOC107722580 coding upstream 20297 29085844 ~ 29088593 (-)
LOC122324118 NA coding upstream 23599 29089146 ~ 29090774 (-)
ubl5 ubl5 coding upstream 61373 29126920 ~ 29128828 (-)
G7591 NA non-coding downstream 45011 29015665 ~ 29017156 (-)
G7579 NA non-coding downstream 81049 28971894 ~ 28981118 (-)
G7551 NA non-coding downstream 260502 28792644 ~ 28801665 (-)
G7550 si:dkey-222h21.2,si:ch211-114l13.4,si:ch211-236p5.3,LOC107729025,LOC107575333,LOC107574376,LOC107575359,LOC107659785,LOC107576777,LOC107575507 non-coding downstream 261311 28790466 ~ 28800856 (-)
G7547 NA non-coding downstream 288001 28773354 ~ 28774166 (-)
G7575 NA non-coding upstream 49949 29115496 ~ 29124052 (-)
G7574 NA non-coding upstream 91297 29156844 ~ 29158718 (-)
G7620 NA non-coding upstream 225214 29290761 ~ 29291343 (-)
G7624 NA non-coding upstream 227079 29292626 ~ 29293410 (-)
G7629 NA non-coding upstream 252034 29317581 ~ 29318226 (-)
LOC122324333 NA other downstream 117549 28942988 ~ 28944618 (-)
G7527 LOC107575698,LOC107577169,LOC107575696 other downstream 536616 28523705 ~ 28525551 (-)
G7515 slc27a1b,slc27a1,LOC107662711,LOC107560569,LOC107739969,LOC108413363 other downstream 615576 28406182 ~ 28446591 (-)
G7508 LOC107739967,LOC107747700,LOC107716241,LOC107572978 other downstream 670114 28391039 ~ 28392053 (-)
G7475 NA other downstream 813644 28244128 ~ 28248523 (-)
LOC122362981 LOC107662727,LOC107560596,LOC107685031,LOC107722572 other upstream 2435 29067982 ~ 29152545 (-)
LOC122325037 sh2d3a,LOC107662707,LOC107685029,LOC107560576,LOC107727164 other upstream 36139 29101686 ~ 29112734 (-)
G7569 gtf3c1,LOC107678316 other upstream 236260 29301807 ~ 29310598 (-)
LOC122354733 LOC107678949,LOC107566822,LOC107713175,LOC107662686,LOC107758373,LOC107574162,LOC107662685 other upstream 345560 29411107 ~ 29434213 (-)
G7648 LOC107662685,LOC107678949 other upstream 360551 29426098 ~ 29476338 (-)

Expression


Co-expression Network