LOC122359935 (LOC107709532,LOC107571128,LOC107674943,LOC107662715,LOC107719079,LOC107560584)


Basic Information

Item Value
gene id LOC122359935
gene name LOC107709532,LOC107571128,LOC107674943,LOC107662715,LOC107719079,LOC107560584
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28924616 ~ 28928580 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260208.1
CGACGGCGAACTCCCACTAGAAGGAGTTGTCCCCAAGCTCGTGTTAGGGCTAGTTTGTTCGCTCCAGCACAGACGGTGGCGCTGTCAGGGTCTTCGGTGAGACTGAACAAACCGCAGAACGACAGAAACAGCAGCTTACAGTTTCAGCCCTCGACCGATGTTGATCATGAAAGCTCAGGTGGATGTGGTCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTATATCACAGAAATCTGTCAGCTGAAGAAAGAGGTGGCGTCACTGGAGGAGAAGCTGAGAGAAAGAGGGGAGGATTCAGTCTGGAGCGTCAGAGATCAGCCCACAGAGCAACTCTCTGATCAGAGATCTAGAAACACACAGGACTCTGAGCTCAGCCTTAGTTTGCTCTGTTACACTGACGCTCAGGAGAGCGTGTGTGACAGTCATAGGTCCGCCGACCAAAACTCAGAGTCTCTGGGGTCTGACTGCAACGCTGGAGAACAGCAGATGCTGCAGACACCGATGAAGATGTGCTCCGTCGAACTGGTGGACTGTAGTACTTCAAAGGAGACGAGAGAAAAAACTATAGCGGACAAAGTACAAagtgacgatgatgatgatgaagatgacaaTTGCGGcagtggtggtggtggtgatgatgatgatgatgactttAATCCCTCGGGTGAAAACACCAGTCCATCTTCTGATGAAGAAATGGCCTCAACATCCAAAAAGCAGCCGGCAGTTAAGAATTTTTCTTGTGCCACCTGTGGGAGAACCTTCAGAAAACAGGGAAATTTAGCGAAACATGAGAGAAAACACTCCGAACCTAAAAAATACACTTGCAAGATATGCAGCATCAGCTTTCCTACCTTGAAAGAAAGAAGCCTTCATTCAAAAGAGCACCGCGTGAAGAAGGAGTTTCGCTGCGAGCAGTGCGGGAAGGTGTCCTTCTCTTCCGGTAATTTGAAGATTCACATGAAGACGCACACTGGCGAGAAGCCTTTCCACTGCAGCGAGTGCGACAAGTATTTCAGCACCAAACAGTCTCTTCTTGTTCATAATCGAATCCACACGGGGGAAAAGCCGTACAAGTGCCCTCACTGCGAGAGAAGGTTCCGAGACGGGTCTCAATTCAAGACCCACATGCGTTCGCACGCCAGCGAGAGGCCTTACCAGTGCAGCGAATGTGGGAAAACCTTTAAGCAGCCCATTTGTCTCATATCGCACCAAAAAATACACTCTGAGAAACTGCACCAGTGCACGCACTGCGACAAACGATTCCGGCAGATTTTTCAGCTGAAACGACACGAGAGAATGCACTCCGGAGAAAGGCCGTACCTGTGCTTTCACTGCGGGAAGAGCTTTTCCGATCCTGCTCATTTCAGAGTGCATCAgaggattcacaccggagaaaaACCGTACCAGTGTAGCGTTTGCGAGAAGAGTTTCCGTCAACACACCAACCTACTGAAGCACCAGAGGATACACACTGGAGAAAGACCCTTCAAGTGTTCTCACTGCGACAAGACGTTTGCTCGATCCGATGTCCTGAAGATCCATGAGCGAGTTCATACAGGAGAGAAACCTTACCGCTGCTCCATCTGTGGTGAGAGATTCGCTTATCTAGGGGGTTTTCAGACccaccaaaacaaacacgctAAAGAACAAACTACTCCAGAGTCATCATAGTGGCTTTCATCGGTCCCAGCTCATCCTGGAACTTTTCCACTTTTTAATGCCAGTAGGAGGCTTTTATGACATGAACTGGGAGTAGAAATGGACTAAATGTTAAATGCTGTGATTGTGATGGTGTTTGACAAAGCAGGGCAATGATGCTGTAACTAACACTATTTCAAAAGTAGTTGTatattttcaccttttttttctcctcccaAGCAACTTTTaagtcttttaaatgtttttatgacatTATAGCAGATGTTTGACAGGGAGAACGTACAATAATCGAGCAACTGCTATTGGGATGTACGGGACTATTAATGGATAGCTTTCTGCAAGTGTGTTAGACCTCCATGATATGCACTAAGAAATAAATTATGGAGATGAAAATGGAAATCACTGGTAAGTGTAATAATGTGTTAACTTGGAATTTTTGACCAtactttgttttgaaaatggCATAATCAGGCCCTGGAACCAaggtaataatgttttattattattttaatacctGAACCAAGCAGATATGGGTctgttaattataataacataattaagGGATTATAATAACGTAAccagggatcctcaaatctggcTCACAACATCCACTTTCCAGCAAAGTTGAGCTCTAAAgcaaatcaaacacacctgagcatgctaaccactgtcttcaggatcactagaaaAATGCAGGTAGGTGAGTttgatcagggttggagctaaactcagATTTTAGGATCCCAGTTGCACACACACCTGAGGAACGTTGGATTTATAgcaatgtgcttttaattttttgaaatgctaatttaattagcaattgtatggaaaaaaaacaaatacaaaataaaagggatgtacttttttatttcataa

Function

NR:

description
PREDICTED: zinc finger protein 501-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260208.1 True 2560 mRNA 0.44 4 28924616 28928580

Neighbor

gene id symbol gene type direction distance location
LOC122358117 LOC107571122,LOC107675016,LOC107709529,LOC107560588 coding downstream 112 28914998 ~ 28924504 (-)
LOC122325105 slc27a1b,LOC107662711 coding downstream 10758 28899713 ~ 28913858 (-)
LOC122349524 LOC107572981 coding downstream 25881 28893141 ~ 28898735 (-)
LOC122355940 NA coding downstream 83081 28809212 ~ 28841535 (-)
LOC122362864 LOC107739961,LOC107574374,LOC107742984,LOC107717634,LOC107574376,LOC107725412,LOC107724128,LOC107576777 coding downstream 247791 28674433 ~ 28676825 (-)
LOC122357989 LOC107571123,LOC107709529 coding upstream 1123 28929703 ~ 28941914 (-)
LOC122360916 LOC107668674,LOC107571136 coding upstream 27727 28956307 ~ 28961850 (-)
LOC122323133 LOC107571137,LOC107668677,LOC107662732,LOC107560590,LOC107719145,LOC107742532,LOC107560573 coding upstream 109142 29037722 ~ 29043291 (-)
dnm2b dnm2,dnm2b,LOC107742527,LOC107571132,LOC108258735,LOC100701110 coding upstream 122194 29050774 ~ 29061674 (-)
LOC122358964 LOC107560570,LOC107742521,LOC107571120,LOC107746494,LOC107668675 coding upstream 133587 29062167 ~ 29065547 (-)
G7541 LOC107575099,LOC107576344,LOC107574587,LOC107576324 non-coding downstream 116910 28743444 ~ 28807706 (-)
G7551 NA non-coding downstream 122951 28792644 ~ 28801665 (-)
G7550 si:dkey-222h21.2,si:ch211-114l13.4,si:ch211-236p5.3,LOC107729025,LOC107575333,LOC107574376,LOC107575359,LOC107659785,LOC107576777,LOC107575507 non-coding downstream 123760 28790466 ~ 28800856 (-)
G7547 NA non-coding downstream 150450 28773354 ~ 28774166 (-)
G7535 NA non-coding downstream 251982 28670921 ~ 28672634 (-)
G7579 NA non-coding upstream 43314 28971894 ~ 28981118 (-)
G7591 NA non-coding upstream 87085 29015665 ~ 29017156 (-)
G7575 NA non-coding upstream 186916 29115496 ~ 29124052 (-)
G7574 NA non-coding upstream 228264 29156844 ~ 29158718 (-)
G7620 NA non-coding upstream 362181 29290761 ~ 29291343 (-)
G7527 LOC107575698,LOC107577169,LOC107575696 other downstream 399065 28523705 ~ 28525551 (-)
G7515 slc27a1b,slc27a1,LOC107662711,LOC107560569,LOC107739969,LOC108413363 other downstream 478025 28406182 ~ 28446591 (-)
G7508 LOC107739967,LOC107747700,LOC107716241,LOC107572978 other downstream 532563 28391039 ~ 28392053 (-)
G7475 NA other downstream 676093 28244128 ~ 28248523 (-)
nxnl1 nxnl1,LOC107748002,LOC107713785,LOC107571423,LOC107659782,LOC107690637 other downstream 701369 28220899 ~ 28223247 (-)
LOC122324333 NA other upstream 14408 28942988 ~ 28944618 (-)
G7563 ubl5,pin1,LOC107727173,LOC107685032,LOC107571794,LOC107662743 other upstream 121163 29049743 ~ 29132092 (-)
LOC122362981 LOC107662727,LOC107560596,LOC107685031,LOC107722572 other upstream 139402 29067982 ~ 29152545 (-)
LOC122325037 sh2d3a,LOC107662707,LOC107685029,LOC107560576,LOC107727164 other upstream 173106 29101686 ~ 29112734 (-)
G7569 gtf3c1,LOC107678316 other upstream 373227 29301807 ~ 29310598 (-)

Expression


Co-expression Network