LOC122360916 (LOC107668674,LOC107571136)


Basic Information

Item Value
gene id LOC122360916
gene name LOC107668674,LOC107571136
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28956307 ~ 28961850 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261792.1
TGACTAAAACAGataagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgataaagagagagagcagtgtAAACAGCGATCCAGACAGAAGAAGATCTCCAGTCCATCATGAAGGTCCAGACCGTAGCGCTGCTCCTCTCCGCTGTCCTGCACTCAGTGTGGGGTCAGAGTCCTGTGGTGACCGTCCGGCCGCGGGCGGCTGCCGTTAAACCCGGCGAGGCGGTCAGCTTCCACTGCCGTGTGACCGGCGGCTCCCAGCCCGTCCAGCTGGAGTGGAGGAGGACCAACAGCCAGCCGCTGGGAGATAACGTGAAGCTTGGACCTGATGGTGCCGTGCTGACCATCGCTAGCGTCCGTCTCGGGGACCAGGGCGGGTACCGCTGCATCGCCACCAACGCTCAGGGCAAAGGGATGACCACGGCGTCTCTGAACATCAGACAGCCTCCGAAGGTGCGTGTGACGCCCGCTGGGCCGCTGTCGGTTACCGCCGGCGACAGCGTGACTCTGGAGTGCAGCGTCACAGGGAAGCCCCGCCCCTCCATCAGCTGGATCAAACAGGGAAGCGATACGGCGCTCGTCTCCACGACAACAGAAGCTACAGCATCCCTACAGGTGACAGTGATGTCAGCCGAGGATGTCGGGGTGTTTGTGTGCCGCGCTCAGAGCAGGGAGGGGCTTGCTGAGGGGCAGGTGGAGCTTACGCTGAAGGGCGGGGCGTTTCCTCAGGCCTCGGTAACAGAAACAGATCTGACAGCCGTCGAGGGACAGAGCGTCACCATGCACTGCCACGCCAgcgGTTCACCCGCTCCAGTCATCTCCTGGTCGAAGCTGCGGGCGCCGTTGCCGTGGCAACACAAAGCGCACGGCGGGGTTCTGACGCTCAGTCACGTGGGTCGACAGGACTCAGGACAGTACATCTGTAACGCCACCAACGCCCTGGGCTTCAGCGAGGCCTACGTGCAGCTGGAGGTGGACTCTCCTCCCTACGCCACCACGCTGACGGAAGAGACCGTCGCGCGCCCCGGAGACGCCTTGCGCCTGCAGTGCCTCGCTCACGGAACTCATCCAATCCGCTTCCGCTGGACGCGTGTGGGCGGGGCCTCCATGTCGCCGGGGGCGGAGTCCACCAAAGACGGCCTGCTGAAGATCGCGCAGCTCAGAGTGACGGACAGCGGCACATATAAGTGTGTGGCGACCAATCACGTGGGCTCCAGTGAAGCGCTGACAAAGGTCACTGTGAGAGCTTAATCACAGACCTGCTTGCTGATTGTAAAAATCTACCCATTAATTACGAGGACAAAAGAGGCTTCAGACCTACAAGATGATGAAGCTCAGAGACCAAACAAATGTTGAGTTTCGCAATGGTGTTCAGAACATCAAAAAAtagttcaattttttttatattctgctATTGTGATTATTTCTGAAATAGCACAATGGAAAAATGCTTTCACTTTGGCATTCAAATCAAATGCGTAATAAAACATTGTGtgaataaatgtgtaattacctTCCA

Function

NR:

description
PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like

GO:

id name namespace
GO:0009653 anatomical structure morphogenesis biological_process
GO:0042802 identical protein binding molecular_function
GO:0050840 extracellular matrix binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261792.1 True 1516 mRNA 0.57 9 28956307 28961850

Neighbor

gene id symbol gene type direction distance location
LOC122357989 LOC107571123,LOC107709529 coding downstream 14393 28929703 ~ 28941914 (-)
LOC122359935 LOC107709532,LOC107571128,LOC107674943,LOC107662715,LOC107719079,LOC107560584 coding downstream 27727 28924616 ~ 28928580 (-)
LOC122358117 LOC107571122,LOC107675016,LOC107709529,LOC107560588 coding downstream 31803 28914998 ~ 28924504 (-)
LOC122325105 slc27a1b,LOC107662711 coding downstream 42449 28899713 ~ 28913858 (-)
LOC122349524 LOC107572981 coding downstream 57572 28893141 ~ 28898735 (-)
LOC122323133 LOC107571137,LOC107668677,LOC107662732,LOC107560590,LOC107719145,LOC107742532,LOC107560573 coding upstream 75872 29037722 ~ 29043291 (-)
dnm2b dnm2,dnm2b,LOC107742527,LOC107571132,LOC108258735,LOC100701110 coding upstream 88924 29050774 ~ 29061674 (-)
LOC122358964 LOC107560570,LOC107742521,LOC107571120,LOC107746494,LOC107668675 coding upstream 100317 29062167 ~ 29065547 (-)
LOC122362918 LOC107662727,LOC107722580 coding upstream 110885 29072735 ~ 29074696 (-)
LOC122356586 LOC107721946,LOC107662706,LOC107560594 coding upstream 114569 29076419 ~ 29085458 (-)
G7541 LOC107575099,LOC107576344,LOC107574587,LOC107576324 non-coding downstream 148601 28743444 ~ 28807706 (-)
G7551 NA non-coding downstream 154642 28792644 ~ 28801665 (-)
G7550 si:dkey-222h21.2,si:ch211-114l13.4,si:ch211-236p5.3,LOC107729025,LOC107575333,LOC107574376,LOC107575359,LOC107659785,LOC107576777,LOC107575507 non-coding downstream 155451 28790466 ~ 28800856 (-)
G7547 NA non-coding downstream 182141 28773354 ~ 28774166 (-)
G7535 NA non-coding downstream 283673 28670921 ~ 28672634 (-)
G7579 NA non-coding upstream 10044 28971894 ~ 28981118 (-)
G7591 NA non-coding upstream 53815 29015665 ~ 29017156 (-)
G7575 NA non-coding upstream 153646 29115496 ~ 29124052 (-)
G7574 NA non-coding upstream 194994 29156844 ~ 29158718 (-)
G7620 NA non-coding upstream 328911 29290761 ~ 29291343 (-)
LOC122324333 NA other downstream 11689 28942988 ~ 28944618 (-)
G7527 LOC107575698,LOC107577169,LOC107575696 other downstream 430756 28523705 ~ 28525551 (-)
G7515 slc27a1b,slc27a1,LOC107662711,LOC107560569,LOC107739969,LOC108413363 other downstream 509716 28406182 ~ 28446591 (-)
G7508 LOC107739967,LOC107747700,LOC107716241,LOC107572978 other downstream 564254 28391039 ~ 28392053 (-)
G7475 NA other downstream 707784 28244128 ~ 28248523 (-)
G7563 ubl5,pin1,LOC107727173,LOC107685032,LOC107571794,LOC107662743 other upstream 87893 29049743 ~ 29132092 (-)
LOC122362981 LOC107662727,LOC107560596,LOC107685031,LOC107722572 other upstream 106132 29067982 ~ 29152545 (-)
LOC122325037 sh2d3a,LOC107662707,LOC107685029,LOC107560576,LOC107727164 other upstream 139836 29101686 ~ 29112734 (-)
G7569 gtf3c1,LOC107678316 other upstream 339957 29301807 ~ 29310598 (-)
LOC122354733 LOC107678949,LOC107566822,LOC107713175,LOC107662686,LOC107758373,LOC107574162,LOC107662685 other upstream 449257 29411107 ~ 29434213 (-)

Expression


Co-expression Network