LOC122345303


Basic Information

Item Value
gene id LOC122345303
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20401851 ~ 20404258 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250989.1
CACGAAATGACGACTTTTCGCTGCACCTGTGGACCTGCGACACTTCATCACTGACTGATTGGAAATCTGAGCTGAGAGAATTCCTCGAGAATaggaacaaaaacaatagaaagCCTGCTAGGCTGCAAAGAACCTagatgaaataaacacaataatGTCCTCACACCGCCTTATGATTCTCCATTGGGTTAAACCAGTGCAGTGCCTTAAGTGACTTTAATTAGTATCCTGCAGGTGCAATGGAAAAACGAGCAGCGTTATCAATAAAAAGGAAGATGTGCTTGCTAACTACACATCCTGACTTCATATTTggaatttgattattattttaagtagccatcgcattatttattataacagatATGAGTTTGCAGGTCGTTTGCTCAGAAGACGTCCCGAGGTCATCAGATGAATATGTCAGTTTACAGTTTGGAAAACAGACCCGATGGATTTCATAATCACAAGGCGAACACTGATATTGGGTGTTAGCTTGAAATGCGGCGGACTCAGTTCCTATATTTATCACTCGAATCAGCCTGACTCATGATCTGTCACTGGCGGGTCAATAAGTGTCAGTCATATCTAGTCAAAGTCATCTGAACCTTTCGGCGTGGGATATTACAGTAAGTTCCACACCCAGAGAATCAAGCTCAGCTGATGGTAAAGCTCGGTTGAGTTGCTGTAAACTAACCTCGACGCAGCCGGTCAGGATGGGAGTTTGTGGATCTAAGCGCTCTGAGTCACGGCCGCCCGGCTGTTTGCAAGTACAGGAGCACACAGCCGCTCCTGATGGGTTCATAGGTCACTCTCATGACCCTAGGGCACACAAAATGTTCAGCGGCTACAGCACGGAGAATTCCACGTTTGTCCATGTGGTGTAGCACAACGGTGTCAGGTCACATGGTGTATTGTCAGCCAGCAGGCAGTTCGATTCTAAAACTAGCCCCAGCAAGCTGGGGAGCTGTTCAAATGTGAGTCAGAAGTTGCTCACCAATTCTCCATAACCGCTTAtccttcattcattttatttgacccTATTATGcatctttaatgtatttaatgtgttgtgcaaccttggtgagcatgaAATGTGAAATGGTAGTTTATGCCCACTTGGCTGTATTGTTTATTCTGTGCCCGTTTAGAACAGTTCCTGATGTTCTCTCTGAACGCCACAATTAAAGCTCAGAGAAGGTCAGGATGGAATCCACGACCATTTCAAGGACTGACAAGACAAATAAGCAAACACAGGAGTAACAACAGACATCCGAAGAACCTTAGACTGGTTTGGAGCTCATTGTGGCACATTTTACACATAATGCAGACGTTCGTGAAAAGTTCCCCGATATTAGCAGGAGCTAGAAACAAACCCGCTATTAAGGCAAGTTCCTTTACATTGTTGCTTCTAATCAAGCTCCATGTCCATTCCTGTTgttctcacatcaaaatccaccacaTAACTATTTAGAACTGGAATTTgcttcttaaaaatacaaagcctttcacttcacaagatgttagcTGTTGGATTTGTGGATCGTTATACTCTCATACTGGCACCCATCCGCTGCAGAAGACTCATTGTTGAGCaagtaatgcaatgcaatatttaCCCAAATCTGTTCAGGAGATCATACAAACTTGTCTACATCTTGCATGGCCCGagaatgagtttttattttgggtAAATCATTCCCATTCCTTTAAAACTAAGTCATTAACCGGAGAGAAATAGGCAGATGATTCCGACAGGTAACAGAAGTAAGATTTTTATCACAATATGACTAAAAACTCAGCTGCGAAGACTGGTACACATATAATTGTCAAAAGccagacagatttgattaaaagtgtttaattgaACTGCCGAGAAGATTATGCATGGAGGTTAGAATCAGTTgcataatgtttatatttgccAAATGTGGCAGTGtattaaataattgattaaacTCTGCACGGGGCACAAGATGACTCATGATGCTGAGCAGAGCAAGCCAGTTCAGATTCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250989.1 True 2013 lncRNA 0.42 4 20401851 20404258

Neighbor

gene id symbol gene type direction distance location
cryba1l2 cryba1l2,LOC107556821,LOC107664562,LOC107674250,LOC107551533,LOC107746552 coding upstream 46617 20351650 ~ 20355234 (+)
tmx2b tmx2b,LOC107664575,LOC107674258,LOC107556817,LOC107730509,LOC107551492 coding upstream 113228 20284242 ~ 20288623 (+)
slc43a1b slc43a1b,LOC107664571,LOC107551476,LOC107730511,LOC107674269,LOC107556815 coding upstream 120549 20269043 ~ 20281302 (+)
si:dkey-28b4.8 si:dkey-28b4.8,LOC107664566,LOC107551445,LOC107556825,LOC108434786,LOC108262771 coding upstream 136782 20244740 ~ 20265069 (+)
si:dkey-9i23.6 NA coding upstream 186112 20209054 ~ 20215739 (+)
slc43a3a slc43a3a,LOC107746630,LOC107674217,LOC107730523,LOC107664567,LOC107551582 coding downstream 2161 20406419 ~ 20413525 (+)
vwa11 LOC107730535,LOC107556812,LOC107674268 coding downstream 28746 20433004 ~ 20444796 (+)
si:ch73-109d9.2 LOC107674212,LOC107746722,LOC107556810,LOC107730527,LOC107664578 coding downstream 46900 20451158 ~ 20454879 (+)
si:ch73-109d9.3 LOC107730528,LOC107551616,LOC107664580,LOC107674213,LOC107746741,LOC107556809 coding downstream 50762 20455020 ~ 20459072 (+)
si:ch73-109d9.1 LOC107556808,LOC107746687,LOC107551630,LOC107664569,LOC107730521,LOC107674214 coding downstream 56861 20461119 ~ 20470161 (+)
G4829 NA non-coding upstream 22519 20377325 ~ 20379332 (+)
G4823 NA non-coding upstream 35268 20365859 ~ 20366583 (+)
G4817 NA non-coding upstream 47504 20353978 ~ 20354347 (+)
G4686 rgs12b,LOC107749922,LOC107679871,LOC107551217 non-coding upstream 401303 19999341 ~ 20000548 (+)
G4680 NA non-coding upstream 416870 19984725 ~ 19984981 (+)
G4852 NA non-coding downstream 55241 20459499 ~ 20460183 (+)
G4853 NA non-coding downstream 56079 20460337 ~ 20460568 (+)
G4976 NA non-coding downstream 316021 20720279 ~ 20721036 (+)
G4984 ctnna2 non-coding downstream 524039 20928297 ~ 20930642 (+)
G4991 NA non-coding downstream 612962 21017220 ~ 21020726 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 158502 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 255995 20142461 ~ 20145856 (+)
scoca scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533 other upstream 624801 19715553 ~ 19777050 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other upstream 879452 19521084 ~ 19522399 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other upstream 2117207 18247250 ~ 18284644 (+)
LOC122348864 ctnna2,LOC107706127 other downstream 917204 21321462 ~ 21361440 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other downstream 1186619 21590877 ~ 21620592 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other downstream 1227957 21632215 ~ 21635052 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 2436430 22840688 ~ 22851393 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 3138806 23543064 ~ 23554625 (+)

Expression


Co-expression Network