LOC122348671


Basic Information

Item Value
gene id LOC122348671
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 15665228 ~ 15668159 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251351.1
GGATGGCATTTTTGGGATTCCCAGGCAATTTCAATGGGTGTTCATGGTAGTTGTTGTGCTGCTCGGCTTTGGAGGATTCCAGTGTTTAAACTGTAGAGGGTCAATGGAGTTCTCACTGAAGGAACGCTGGAGCAGTTCAGTGATGTGCATTGTGGCAGCTCGCGCAGTGTCCTTGGCAGCTTCCAGTTGTTCCATGCAGTGAGTTTGTGGAGGAGTTGCAGTGCAAGTGATGGAATGTGCACTGCTCTGATTGAGGAAAACTCTCAGATGGAGGGAAGACGACgacttctctttctttcatttgcttccttctttttttttttctctccctcttcgAAAACCATCAAGCTTTGATCACCTCTGATGAGCACTCAGTCAACCACCACCACCCACAGCACCTGTCACCCACACCACTTCTTAGCCGACTATTTCATCCAGTCCCATGGCCTGTCCAGCGCAGACACTTAACGGACACTGGCTTGGCGGAGAACTGCAATGaattcttcttcttcagtgCTTCCTcctgtttaaaatgaatcctCTGTTATATCCTACCGAACAATCTAGGATagctttcaatatttttttactttcaggATCCTCTCTTCGATGGGCAGAAACACAGTGGGGACAAGGTGGTCCCATCATCaatttcagtgattcagtgattTCAAGGAAGTATTTGGCCATACAGACGGAGAAGTATCAGCAGGTGAACAGTTGTATCATCTTGCACAAGgtacaaaataaattcaagaaTACACGTTTATGATTTAGTACTCTCGCTGCAGCCAGCAGATGGAACGAGAGGGCGTTTTTAATGACCTTTCATCAAGGTCTGGAGCATAAACTTCGTCTCCAACTAGCTGCTCAGGATGAATATTGCGGATTGGAACAATTTATTCAACACACTATTAAATGTGCTTCCAGAATGCAATCCACTTACAGCGATATGTATAGCACTCGCCCCCTTCCATCAGCAAGAGCTAGGTAACCCTCCAGAACTTCTGCCGGAACCCATGCAGATTAATTCTGGAAAAATGACACCCGTTGAGCGGCAGAGGAGAATGACCCAGGGGCTGTGACTGTATTGTGGTACTTAAGAGCATTACATACGTGTATGCCCCCACTTTCCCCCACGTCCCATGAGAGCGGTTCAATTACCACCACACCGGCCATGGGACTGTGCCATCAATTTTATTCCAGGTACCTCTGAGCCAGCTCCCGTTAATCTGCCAGACTGTCCCCAGGGAAACACCAGGAACAACGCTAACAACTCATCCACTCCACGTACTTATCCTTGGTCACTGGCCACCCAGGGGCCAACAACACTCTCTCAATGCTCTAAGGTCACCTGGTGGCCTGAGATGGCCAGGGACGTGAGAAGGTAAGTGAGTGGATGTAAGGATTGTGTAATGTCTAAGACTCTGTGACACTTACCAGTCGGCAAGCTATGTCCACTTCCAATCTCGAATTGCCCCTGGGCACACCTGGGAGTCCACTTCATTACTGATATGCCATCCTCAGAAGGTAACAATTATGTTCTAGGTATTGTGGACAGATTTTCCAAGTTTGGTTATTCAATCaatctcttttatttatatagcttttaACAATAAAGATTGTGCCAAatcactgaacagtataaaatagaaaaattaaatgatagggatgttataatgacgagattgaacaatttgttattaaatgcagaaacgGGTCTCTGtcatcaattcaacgataattgCTTATAATTAAGTGTCCTGCCTTGGAAACTGCTGAATGTTTAATCACGTTTTCAAGTTATTCATACTCCCAGAGGATTGTGGGCGCCAGTTCATCTCCAGGGTGTGCAGatctttcttctttctcctgGATGTGACCATTAGTCTCTTATCAGGTTTACGCCTGCAAACTAACGGACAAACGGATAGAAAGTGGGGTGATTCCTCTGTACCTTCTGCCATGGCCACCAGAACTCCTGGAACCAGTTCTTGGTCTGGGTCGAGTATGCACAGAATTCCCTGAGGCAACCACCTACTGGACTCACTCTCTTCCAGTGTGTGCTCGGTTTCTAGCCTCCCCTATTCTCCTATTCTACAAAGTTCCTTTTATGCTCTTCTgtgcaaataaaactaatacttATACCATACAATCGTAAcacgttttgCTGTTTTATATGCTATAGATAAAGGAATTCTGAATGGTATCTTTTTTAGCGAGCC
>XR_006251352.1
GGATGGCATTTTTGGGATTCCCAGGCAATTTCAATGGGTGTTCATGGTAGTTGTTGTGCTGCTCGGCTTTGGAGGATTCCAGTGTTTAAACTGTAGAGGGTCAATGGAGTTCTCACTGAAGGAACGCTGGAGCAGTTCAGTGATGTGCATTGTGGCAGCTCGCGCAGTGTCCTTGGCAGCTTCCAGTTGTTCCATGCAGTGAGTTTGTGGAGGAGTTGCAGTGCAAGTGATGGAATGTGCACTGCTCTGATTGAGGAAAACTCTCAGATGGAGGGAAGACGACgacttctctttctttcatttgcttccttctttttttttttctctccctcttcgAAAACCATCAAGCTTTGATCACCTCTGATGAGCACTCAGTCAACCACCACCACCCACAGCACCTGTCACCCACACCACTTCTTAGCCGACTATTTCATCCAGTCCCATGGCCTGTCCAGCGCAGACACTTAACGGACACTGGCTTGGCGGAGAACTGCAATGaattcttcttcttcagtgCTTCCTcctgtttaaaatgaatcctCTGTTATATCCTACCGAACAATCTAGGATagctttcaatatttttttactttcaggATCCTCTCTTCGATGGGCAGAAACACAGTGGGGACAAGGTGGTCCCATCATCaatttcagtgattcagtgattTCAAGGAAGTATTTGGCCATACAGACGGAGAAGTATCAGCAGGTGAACAGTTGTATCATCTTGCACAAGAATGCAATCCACTTACAGCGATATGTATAGCACTCGCCCCCTTCCATCAGCAAGAGCTAGGTAACCCTCCAGAACTTCTGCCGGAACCCATGCAGATTAATTCTGGAAAAATGACACCCGTTGAGCGGCAGAGGAGAATGACCCAGGGGCTGTGACTGTATTGTGGTACTTAAGAGCATTACATACGTGTATGCCCCCACTTTCCCCCACGTCCCATGAGAGCGGTTCAATTACCACCACACCGGCCATGGGACTGTGCCATCAATTTTATTCCAGGTACCTCTGAGCCAGCTCCCGTTAATCTGCCAGACTGTCCCCAGGGAAACACCAGGAACAACGCTAACAACTCATCCACTCCACGTACTTATCCTTGGTCACTGGCCACCCAGGGGCCAACAACACTCTCTCAATGCTCTAAGGTCACCTGGTGGCCTGAGATGGCCAGGGACGTGAGAAGGTAAGTGAGTGGATGTAAGGATTGTGTAATGTCTAAGACTCTGTGACACTTACCAGTCGGCAAGCTATGTCCACTTCCAATCTCGAATTGCCCCTGGGCACACCTGGGAGTCCACTTCATTACTGATATGCCATCCTCAGAAGGTAACAATTATGTTCTAGGTATTGTGGACAGATTTTCCAAGTTTGGTTATTCAATCaatctcttttatttatatagcttttaACAATAAAGATTGTGCCAAatcactgaacagtataaaatagaaaaattaaatgatagggatgttataatgacgagattgaacaatttgttattaaatgcagaaacgGGTCTCTGtcatcaattcaacgataattgCTTATAATTAAGTGTCCTGCCTTGGAAACTGCTGAATGTTTAATCACGTTTTCAAGTTATTCATACTCCCAGAGGATTGTGGGCGCCAGTTCATCTCCAGGGTGTGCAGatctttcttctttctcctgGATGTGACCATTAGTCTCTTATCAGGTTTACGCCTGCAAACTAACGGACAAACGGATAGAAAGTGGGGTGATTCCTCTGTACCTTCTGCCATGGCCACCAGAACTCCTGGAACCAGTTCTTGGTCTGGGTCGAGTATGCACAGAATTCCCTGAGGCAACCACCTACTGGACTCACTCTCTTCCAGTGTGTGCTCGGTTTCTAGCCTCCCCTATTCTCCTATTCTACAAAGTTCCTTTTATGCTCTTCTgtgcaaataaaactaatacttATACCATACAATCGTAAcacgttttgCTGTTTTATATGCTATAGATAAAGGAATTCTGAATGGTATCTTTTTTAGCGAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251351.1 True 2225 lncRNA 0.45 4 15665228 15668159
XR_006251352.1 False 2034 lncRNA 0.45 5 15665228 15668159

Neighbor

gene id symbol gene type direction distance location
spag5 LOC107714621,LOC107695699,LOC107595089 coding upstream 615305 15038404 ~ 15049923 (+)
coro2aa coro2a coding upstream 640347 15005607 ~ 15024881 (+)
uso1 uso1,LOC107714641 coding upstream 660988 14988397 ~ 15004240 (+)
g3bp2a g3bp2,LOC107695289,LOC107714642,LOC107700328,LOC107757577,LOC107598276 coding upstream 677150 14980372 ~ 14988078 (+)
arhgef38 arhgef38,LOC107695304,LOC107714644,LOC107700325,LOC107757628 coding upstream 688973 14966434 ~ 14976255 (+)
raph1b raph1b,LOC107707841,LOC107588825,LOC107719733,LOC107556694,LOC107654246 coding downstream 355780 16023939 ~ 16064272 (+)
cpb2 cpb2 coding downstream 406156 16074315 ~ 16078793 (+)
zc3h13 zc3h13,LOC107588823,LOC107707838,LOC107654272,LOC107719732,LOC107705029,LOC107556716 coding downstream 411251 16079410 ~ 16092907 (+)
tm9sf2 tm9sf2,LOC107654273,LOC107556717,LOC107719731,LOC107705039,LOC107588853,LOC107707817 coding downstream 425043 16093202 ~ 16104199 (+)
zic2b zic2b,LOC107707837,LOC107588821,LOC107654274,LOC107699076,LOC107719739 coding downstream 448931 16117090 ~ 16119734 (+)
G3646 NA non-coding upstream 12199 15652830 ~ 15653029 (+)
G3630 sugt1,sgut1 non-coding upstream 29284 15632781 ~ 15635944 (+)
G3593 NA non-coding upstream 189748 15470622 ~ 15475480 (+)
LOC122350773 NA non-coding upstream 219104 15445188 ~ 15446124 (+)
G3431 NA non-coding upstream 550280 15063251 ~ 15114948 (+)
G3650 NA non-coding downstream 16050 15684209 ~ 15685007 (+)
G3674 NA non-coding downstream 26228 15694387 ~ 15694699 (+)
G3680 NA non-coding downstream 31064 15699223 ~ 15699434 (+)
G3693 NA non-coding downstream 89774 15757933 ~ 15758145 (+)
G3695 NA non-coding downstream 170199 15838358 ~ 15838596 (+)
G3647 NA other upstream 11847 15653093 ~ 15653381 (+)
G3599 NA other upstream 166548 15478098 ~ 15498680 (+)
bnc2 bnc2,LOC107595060,LOC107737409,LOC107737408,LOC107678088,LOC107598241 other upstream 347604 15178603 ~ 15317624 (+)
hemgn hemgn,trmo other upstream 630428 15030944 ~ 15034800 (+)
G3380 LOC107572695,LOC107695836 other upstream 873440 14723545 ~ 14791788 (+)
LOC122348759 raph1b,LOC107654246,LOC107707841,LOC107719733,LOC107705038 other downstream 396112 16064271 ~ 16069915 (+)
gab1 gab1,LOC107725185,LOC107734574,LOC107684448 other downstream 1883314 17551473 ~ 17610745 (+)
lsm6 lsm6 other downstream 2228376 17896535 ~ 17898546 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other downstream 2579091 18247250 ~ 18284644 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other downstream 3852925 19521084 ~ 19522399 (+)

Expression


Co-expression Network