LOC122350488


Basic Information

Item Value
gene id LOC122350488
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24175891 ~ 24177649 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251604.1
TCATGTATTAGCTACTATAAATCAAATGTACAAGTACAATTATGTAAAATGCGTGTATAAAAGTACAGTTGTGTAACATTCAGTTAACACGGACTGACCATaaccatacacacacatcaacacacactcactaaatCCACGGCATCCATTTGAGTATTTTTAGTATCTGCTTTCAATGCCAAAGGATTTAAAGTCACTAACTAGGTGGTAAATCCTCAACAGAGCACAAGACGCACTTGAGAAGCAGGTCCTCTGAGCAGATCTGGACCTCAAGACATCACTCAAGACATCAAGGGAACCTACAGCATGAAGCCCAGGAGGCGTCTGACCTCTGTGGATCTCCTCCCTACGATTCTGGAGCTCCAGGAGAGCCAGAGTCTGGAGGACTACATAGACTCCATACGAGAGCTGTCCCAACCCAGCTACCCTCTCAGCGGACCCCTCCGGGGCTCCCGTCTGTCCCCGTTGCGCATGGCTAAGCAACGCAGCATGTCTTTGGCCACCACAGGTTCTGTCCTGGCACACAAGCCCTGGGTTCTCTCTGGACCTGACAACGTATCACTAACCTTGACAGACTCGAAGGGTCCGACGAGATCGAATCAGGACCCTCTGGACTGGCTTTTTGCACAAGCACAGACCGACCCGGAAGATGTGTGCATGATATGATGGAGACAAAAATGATGAAGTCCCAGCCTCAGGAATATGCTGCTATAATcataaaagttgcaattatttttatttttagtatattaagttgagtatttttttaaatactatatatatatgtgtgtttgtgtgtgtgtgtgtgaagttttgtagttttttttgttcaaattttattatttaatattatgtttaacaaatgtaaatgtgttgaatGAACCGAAGACTATACTGATGCAtgtgaaataaaactatttgcaGCTTTGCATTTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251604.1 True 937 lncRNA 0.42 2 24175891 24177649

Neighbor

gene id symbol gene type direction distance location
LOC122351487 LOC107675992,LOC107729366,LOC107569046 coding downstream 7255 24164545 ~ 24168636 (-)
LOC122330280 zgc:154142,LOC107676135,LOC107594422 coding downstream 74602 24091408 ~ 24101289 (-)
LOC122348966 LOC107675992,LOC107569046,LOC107729366 coding downstream 137235 24032892 ~ 24038656 (-)
neurl1aa neurl1,neurl1aa,LOC107676877,LOC107746052,LOC107746293,LOC107692176 coding downstream 972755 23152502 ~ 23203136 (-)
setd4 setd4,LOC107676883,LOC107560975,LOC107603051,LOC107746057,LOC107692116,LOC107746281,LOC107603006 coding downstream 1262283 22909995 ~ 22913608 (-)
gsk3bb si:dkeyp-80c12.7,gsk3b,LOC107729358,LOC107569048,LOC107675878,LOC107684292 coding upstream 44474 24222123 ~ 24242004 (-)
zgc:175214 zgc:175214,rn122,LOC107675969,LOC107684287,LOC108434705,LOC105891037 coding upstream 90429 24268078 ~ 24274231 (-)
LOC122351310 LOC107675897,LOC107574145,LOC107684327,LOC107706793,LOC107729342,LOC107684326 coding upstream 98080 24275729 ~ 24278863 (-)
zp3c NA coding upstream 104240 24281889 ~ 24284486 (-)
LOC122341589 LOC107729348,LOC107676039,LOC107729349,LOC107578077,LOC107729356,LOC107577678 coding upstream 106971 24284620 ~ 24291130 (-)
LOC122351911 NA non-coding downstream 114679 24058013 ~ 24061212 (-)
G5568 NA non-coding downstream 438998 23735976 ~ 23736893 (-)
G5583 NA non-coding downstream 440288 23733174 ~ 23735603 (-)
LOC122346633 NA non-coding downstream 462434 23708413 ~ 23713457 (-)
G5577 NA non-coding downstream 553010 23619700 ~ 23622881 (-)
G5763 NA non-coding upstream 322744 24500393 ~ 24501238 (-)
LOC122362739 gstcd,LOC107757010,LOC107684312,LOC107729368,LOC107676029 non-coding upstream 325324 24502973 ~ 24508467 (-)
G5769 NA non-coding upstream 373934 24551583 ~ 24551880 (-)
G5780 NA non-coding upstream 383190 24560839 ~ 24561453 (-)
G6019 NA non-coding upstream 511529 24689178 ~ 24689696 (-)
G5624 LOC107675992,LOC107569046,LOC107729366 other downstream 3829 24032863 ~ 24172062 (-)
LOC122351900 tcf7l2,lef1,LOC107750316,LOC107757012,LOC107684275,LOC107676173,LOC107594427 other downstream 93015 24061440 ~ 24082876 (-)
LOC122350023 LOC107675992,LOC107729366,LOC107569046 other downstream 133933 24037063 ~ 24041958 (-)
LOC122351696 LOC107729347,LOC107583214,LOC107566139,LOC107746059,LOC108434669,LOC106951888,LOC108258286,LOC106586852,LOC105012299 other downstream 259443 23771024 ~ 23916448 (-)
gja5b cx41.8,LOC107746285,LOC107676875,LOC107566537,LOC107692115,LOC107746055,LOC107676898,LOC107746286,LOC107566538,LOC107692192,LOC107603053,LOC107746072 other downstream 1145581 23018238 ~ 23030310 (-)
atp5md taf5,LOC107676012,LOC107583167,LOC107574147,LOC107684290 other upstream 16072 24193721 ~ 24251239 (-)
si:dkeyp-80c12.8 NA other upstream 40945 24218594 ~ 24221446 (-)
LOC122341607 LOC107729348,LOC107676039,LOC107578077,LOC107729356,LOC107594453,LOC107676194,LOC107729349,LOC107706808 other upstream 113782 24291431 ~ 24297591 (-)
G6056 NA other upstream 690792 24868441 ~ 24870465 (-)
G6073 NA other upstream 794842 24972491 ~ 24973371 (-)

Expression


Co-expression Network