XLOC_006591 (supv3l1)


Basic Information

Item Value
gene id XLOC_006591
gene name supv3l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23037585 ~ 23051766 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012732
CCACAATTTTAAGGGTCCTTCTGCACGTTGTTACTGAGACGAACTTGACCTCCTTGTCATCACAGGCACTCTTGCTGTAGCTCTAAACAGTTTACCAGAATGAAGATTATAACGTTAATATTGTGACCTTCATTATTCTGTTTAGCTAACGTTATATGCGCATGATTAACAGAAACCTAAAATGTCGGTAAATCGTTGTATTTACTTATTGTCGCGCTCCCACATCCGATACCGGGTCTGTGCTAGCACAAACCTCTCTACTGTTTCTACACTAAGCACAACACAGCATTCAACAAGAAGGACATTTGACAAACTATCCACTAGACATTCATCATCAGGCTCGTCAAGACCGCTGGACACCTCACTGTTTATTCCGCTCGCCGTCAAAACAGATGAAGACGCGGAGGGATCAGTCGGCGCGGAGTTAACGAAGCCCCTGGATAAAAATGAGCTTCTCAAAGTGTTGAATAGATTCTACAAAAGGAAAGAGATGCAAAAACTGGCTTCTGACCAAGGACTTGACGCTCGTCTCTTTCATCAAGCATTTGTTAGTTTTAGGAAATATGTGTTGGAAATGAACTCTCTAAATGCTGACTTGCACATCATCCTTAATGACATCTGTTGCGGAGCTGGTCACATAGATGATATTTTCCCTTACTTTATGAGACACGCCAAACAGATTTTTCCAATGTTGGACTGTATAGATGATTTACGCAAGATCAGTGACTTACGAGTTCCAGCAAACTGGTATCCAGAGGCCAGAGCTATTCAAAGAAAGATTGTTTTTCATGCAGGACCCACCAACAGCGGTAAAACTTATCATGCCATTAAAAGATACTtagaagccaaatctggagtttaCTGTGGACCTCTAAAGCTGCTGGCCCATGAAATCTATGAGAAGAGCAATGCTGCAGGAGTGCCATGTGACCTGGTGACAGGAGAAGAAAGGATATTTGTTGATCCAGAAGGAAAACCATCTGGCCACATCGCCTCTACCATTGAGATGTGCAGTGTCACAACTCCTTATGAAGTGGCTGTGATTGACGAGATTCAGATGATCAAGGATCCTGCCAGAGGCTGGGCATGGACAAGAGCTCTTCTTGGTCTGTGTGCTGAGGAGATTCATGTGTGTGGAGAAGCAGCAGCTGTGGACTTTATCACTGAGCTCATGTTTACCACTGGAGAAGAGGTTGAGGTACATAATTATAAAAGGCTGACCCCGTTTTCAATCTCAAATCATGCTGTGGAGTCATTAGATAACCTGAAGCCTGGTGACTGCATCGTGTGCTTCAGCAAAAATGACATCTACTCAATCAGCAGACAGATAGAAATTCGTGGCTTGGAGTGTGCCGTCATTTATGGCAGTTTGCCTCCTGGCACCAAGTTGGCTCAAGCTAAAAAGTTTAATGATCCAGATGACCCTTGCAAAATCCTTGTTGCCACAGATGCCATTGGAATGGGTTTGAATCTGAGTATCAGGAGAATCATCTTCAACTCTCTGGTGAAACACAGTCTGAATGAGAAGGGGGAGAAAGAGGTGGACACTATCTCCACATCACAGGCGCTGCAGATCGCTGGCCGAGCGGGACGCTTCAGCTCTGTGTTTAAAGAGGGGGAGGTCACCACCATGCACAGAGATGACCTGCCTGTTTTGAAAGAGATCTTGGGGAAGCCTGTTGACCCCATTGCAACTGCAGGATTACACCCCACAGCGGAGCAGATAGAGATGTTTGCCTACCATCTTCCCCAAGCGACTCTCTCAAACCTCATTGATATTTTTGTAAGTCTTTCACAAGTGGATGGACTGTACTTTGTTTGCAACATCGATGACTTCAAATTCTTAGCAGATATGATTCAGCACATCCCTCTAAATCTGCGCTCCCGCTATGTGTTCTGCACAGCTCCTATCAACAAAAAACAGCCTTTTGTTTGTACATCCTTTCTCAAGTTCGCCAGACAGTTCAGCAGAGACGAGCCTCTGACATTCAACTGGGTGTGTCGACAAGTCAATTGGCCCCTGTCCCCTCCCAAAAACATCAAGGACCTGGTTCACCTGGAGGCTGTCCATGATGTTCTAGATCTTTATCTCTGGCTCAGCTATCGTTTTATGGACATGTTCCCGGATTCCAACCAAATCCGTGAAATTCAGAAGGAACTGGACGAAAACATCCAGATTGGTGTTCGTAACATCACACGGCTTATCCGTGCCATTGATAGCCAACCAACAGACACAGAATCCAACAGTTCATCCACGGTTCCTGAATCAGAGACGTCACAGAGGAAGGGACGAGTACTAAGAAGCCAAAATCAAAGAAAAGAGCTTCCTAGGAAGTCTTCGCTCAGCTCGAGACTGTTGCGGGACGGACTGCTGACAAAAGAGCTGTTATCGCAGCTGCAAAAAGAATGGGCTCGAGAGCAAAACGAAGACAACTCCATTCCAGTAAATAAtggcaaaagaaagaaaaagtgaaGCTTTTTTTTGTAGGATGGACTTTTCTTCACTTTTTTCATAAAAgtaagactgtactgatgatgtTCTGAAATGGAAAGTCTCTTCATTTTTGGAGCATCTATTGTTCACTATATATAAAACACCACAATTTTCATATTAATGTAAAACAGAGCATCAGATCGAGGCCTGTACTAACCTGTACAATTTTAGATgtgacaataaaataatattgatatttttaaaa
>TCONS_00012733
ACTTGACCTCCTTGTCATCACAGGCACTCTTGCTGTAGCTCTAAACAGTTTACCAGAATGAAGATTATAACGTTAATATTGTGACCTTCATTATTCTGTTTAGCTAACGTTATATGCGCATGATTAACAGAAACCTAAAATGTCGGTAAATCGTTGTATTTACTTATTGTCGCGCTCCCACATCCGATACCGGGTCTGTGCTAGCACAAACCTCTCTACTGTTTCTACACTAAGCACAACACAGCATTCAACAAGAAGGACATTTGACAAACTATCCACTAGACATTCATCATCAGGCTCGTCAAGACCGCTGGACACCTCACTGTTTATTCCGCTCGCCGTCAAAACAGATGAAGACGCGGAGGGATCAGTCGGCGCGGAGTTAACGAAGCCCCTGGATAAAAATGAGCTTCTCAAAGTGTTGAATAGATTCTACAAAAGGAAAGAGATGCAAAAACTGGCTTCTGACCAAGGACTTGACGGTAAGCATTGTGAACTTATGGTTGTTGTTACCTGAAAAGGTACAATTGAACACAAGAATTCAGCcatatgaagaagaaaaaaaaaaaaaaaaa

Function

symbol description
supv3l1 Predicted to enable helicase activity and nucleic acid binding activity. Acts upstream of or within liver development. Predicted to be located in mitochondrial matrix and nucleus. Predicted to be part of mitochondrial degradosome. Orthologous to human SUPV3L1 (Suv3 like RNA helicase).

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006401 RNA catabolic process biological_process
GO:0070827 chromatin maintenance biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0070584 mitochondrion morphogenesis biological_process
GO:0000958 mitochondrial mRNA catabolic process biological_process
GO:0000962 positive regulation of mitochondrial RNA catabolic process biological_process
GO:0000965 mitochondrial RNA 3'-end processing biological_process
GO:0001889 liver development biological_process
GO:0035945 mitochondrial ncRNA surveillance biological_process
GO:0035946 mitochondrial mRNA surveillance biological_process
GO:0030307 positive regulation of cell growth biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005634 nucleus cellular_component
GO:0042645 mitochondrial nucleoid cellular_component
GO:0045025 mitochondrial degradosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0034458 3'-5' RNA helicase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0016817 hydrolase activity, acting on acid anhydrides molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0003725 double-stranded RNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-030131-2838 Predicted to enable helicase activity and nucleic acid binding activity. Acts upstream of or within liver development. Predicted to be located in mitochondrial matrix and nucleus. Predicted to be part of mitochondrial degradosome. Orthologous to human SUPV3L1 (Suv3 like RNA helicase).

Ensembl:

ensembl_id ENSDARG00000077728

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012732 False 2699 mRNA 0.44 15 23037585 23051766
TCONS_00012733 True 575 lncRNA 0.41 2 23050990 23051724

Neighbor

gene id symbol gene type direction distance location
XLOC_006590 hkdc1 coding downstream 5782 23017498 ~ 23031803 (-)
XLOC_006589 hk1 coding downstream 29772 22972888 ~ 23007813 (-)
XLOC_006588 tspan15 coding downstream 75975 22924024 ~ 22961610 (-)
XLOC_006587 rufy2 coding downstream 130325 22876467 ~ 22907260 (-)
XLOC_006586 pbld2 coding downstream 175452 22849796 ~ 22862133 (-)
XLOC_006592 vps26a coding upstream 6502 23058268 ~ 23067381 (-)
XLOC_006593 srgn coding upstream 18815 23070581 ~ 23074454 (-)
XLOC_006594 kifbp coding upstream 32092 23083858 ~ 23095006 (-)
XLOC_006595 NA coding upstream 160993 23212759 ~ 23217818 (-)
XLOC_006596 si:dkey-103j14.5 coding upstream 182190 23233956 ~ 23270576 (-)
XLOC_006471 BX537274.2 misc downstream 12772680 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 22211360 825904 ~ 826225 (-)
XLOC_006585 BX530068.1 non-coding downstream 190101 22843830 ~ 22847484 (-)
XLOC_006582 CR550304.1 non-coding downstream 253152 22778060 ~ 22784433 (-)
XLOC_006578 BX649385.1 non-coding downstream 842417 22191361 ~ 22195168 (-)
XLOC_006577 NA non-coding downstream 1097620 21925701 ~ 21939965 (-)
XLOC_006570 NA non-coding downstream 1890203 21146114 ~ 21147382 (-)
XLOC_006597 NA non-coding upstream 356263 23408029 ~ 23411631 (-)
XLOC_006602 AL772289.1 non-coding upstream 909526 23961292 ~ 23961406 (-)
XLOC_006605 CR762497.2 non-coding upstream 1075297 24127063 ~ 24127179 (-)
XLOC_006607 CR762497.1 non-coding upstream 1231904 24283670 ~ 24286390 (-)

Expression


Co-expression Network