XLOC_006592 (vps26a)


Basic Information

Item Value
gene id XLOC_006592
gene name vps26a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23058268 ~ 23067381 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012734
gaaattcacTGGAATCGTTCTCTTGCTGGTTGAGCGCTCCCTCTCCGTCTGTGTTGTTCCTGTGTGGATCCAGAGTGAGTCCGCGAGCGCGCAGTGGAACGAACAGGGATCCAGCAGAAGCTGCACTGAGGAGGACCGTGTTCAAGCTAAAGCTACGGAGCTGAAATGAGTTTCCTTGGAGGTCTGTTTGGTCCTGTGTGTGAAATCGATGTCATTCTGAATGATGCAGAGAGCCGAAAAACGGCAGAGCTGAAGACTGAGGAAGGGAAATTGGAGAAGCATTATCTGTTTTATGATGGAGAATCGGTTTCAGGAAAGGTAAATATCAATGTGAAGCAAACCAGCAAACGGCTTGAACATCAGGGAATCCGCATCGAGTTTGTAGGACAAATTGAGCTTTTCAGTGATAAAAGCAATACTCATGAGTTTGTCAACCTTGTGAAGGAGCTCGCTCTGCCTGGAGAGCTGACACAAAACCGCAGCTATGACTTCGAGTTCATGCAGGTGGAAAAGCCGTACGAGTCCTACGTTGGAGCAAATGTCAGACTGAGGTATTTTCTTAAAGTTACAATTGTGAGGAGGCTGTCTGATTTGGTAAAGGAGTATGACCTCATTGTTCATCAGCTGGCTACTTACCCTGACGTCAACAACTCTATCAAAATGGAAGTGGGCATTGAAGACTGCCTGCACATAGAGTTTGAATACAACAAGTCCAAGTATCATCTCAAAGATGTTATTGTGGGTAAAATCTATTTCTTGCTGGTACGGATTAAAATCCAACACATGGAGCTGCAGCTGATCAAGAAAGAAATGACAGGAATAGGGCCGAGCACGACTACTGAGACAGAGACTGTTGCTAAATATGAGATTATGGATGGAGCACCAGTCAAGGGCGAATCCATTCCTATCCGACTTTTCCTGGCTGGCTATGACCTTACACCCACAATGAGAGACGTAAACAAGAAGTTCTCTGTGAGGTACTTTCTGAACTTGGTGCTTGTGGATGAAGAAGATAGAAGATACTTCAAACAGCAGgaAATAGTTTTGTGGAGGAAGGCACCGGAGAAAATGCGGAAAAGGAATTTCCATCAGCGCTACGAGTCGCCTGAGCCCCGGCCGAGTCTCTCTGCCGAGCAGCCAGAAATGTGAGCGGGGTTTGAAGAGTGACCAACAGGGACACACGTACCTCTCAGTGACCAGTCGCAACTTCCACTGAACACCCCTGCAGATCGCTGTTCACACGGTCACCCCTCACTGCTTACGGTGATATAAACTGTGCCTGAAGTGGCTCTGTCCTCCCTGCCGTCCACAGCAAGCAGTCTGTTAGTATACAAGGACACTTTTTAGAAAGCACTGGAAACAATAATGTAAGTCATATAGCACATCTTCAAGATTGCACGTCTCCCTAAAtgaagaaatgtttttaaaagaagtgcACTCACTGGTATCCTCTATGTTCCACGTCATAGAGCAGACAAATAGAGacctaaacacattttaaagagcTTCCTCATGCATGCTAGCTGGTGAATCCGAGTAAGTACTGGTTAATAAAGGCCATGGGTAAAGTTTAAAAAGAAATGCAACAGCACCCAAGCCACACTGtattttcaatccactttaagctgtaaaacatttgtttaacttatttagtgtcttttttttttcttttggtttgtttgtttgtttcttatatacTCTGATAAATTATGTTCTTgaaatttaaagaaattatatgtctatatataatatttaaagagGTTTTGGACTAGAAGCTTTATAAAACTAGGGCAGTTTGTGTATTGATATTGGGCACATCTATTGAATATCTATTCTCAGCCCAATTTTAAATAACACACTGGCTTAGTAGTAAAAGAGGGCCATTTGAAATTCTTAGTTTTATGAACTGTTAAATATCATCTCTGCTGCAATTACATTTCATATGACACTTAAAAAAGATTTTgaattgttttgttgtatttcttGCATGTCATCCTGCTTTAAGGTTTCCTAAGAATGGGGATGTTATCAATGTTTCACTGTCACAAATGTGCGCTTGCATATGTTATGTGGTTTGtgaagtaaatgtttatttagacTATCATTTCAAAAGTCTTTATTTCATTCTAAAGCATTAAATGTTTTCTGTTTCCTTCTATTGCTTTGATTTTAAAACTTACACTacattaataatgaaaatgtgtgtgttcaAAACCGTCGAGAGTGCCCCAATGGAAATGACTAGTGTTTGGAGAACAGAGTGAGTAGTTGTGCTGCGGGAACTGAGTCATTTGTACATCTTGAAAAATTGTACATATCCAGCCATAGTTTGTTTATCTgccaaaatgtcaaataaaaatggAAGTTTATACTTA
>TCONS_00012735
TATCATCTCAAAGATGTTATTGTGGGTAAAATCTATTTCTTGCTGGTACGGATTAAAATCCAACACATGGAGCTGCAGCTGATCAAGAAAGAAATGACAGGAATAGGGCCGAGCACGACTACTGAGACAGAGACTGTTGCTAAATATGAGATTATGGATGGAGCACCAGTCAAGGGCGAATCCATTCCTATCCGACTTTTCCTGGCTGGCTATGACCTTACACCCACAATGAGAGACGTAAACAAGAAGTTCTCTGTGAGGTACTTTCTGAACTTGGTGCTTGTGGATGAAGAAGATAGAAGATACTTCAAACAGCAGGTCTAGTGTTTTTGATGAAAATATCATGTTCCATTGCACTTACAGTGTCTTATTAGACACAAAGAAGTGATATAAATGaattctgtcttttttttgtgtgtgtaggaAATAGTTTTGTGGAGGAAGGCACCGGAGAAAATGCGGAAAAGGAATTTCCATCAGCGCTACGAGTCGCCTGAGCCCCGGCCGAGTCTCT
>TCONS_00013780
GTATGACCTCATTGTTCATCAGCTGGCTACTTACCCTGACGTCAACAACTCTATCAAAATGGAAGTGGGCATTGAAGACTGCCTGCACATAGAGTTTGAATACAACAAGTCCAAGTATCATCTCAAAGATGTTATTGTGGGTAAAATCTATTTCTTGCTGGTACGGATTAAAATCCAACACATGGAGCTGCAGCTGATCAAGAAAGAAATGACAGGAATAGGGCCGAGCACGACTACTGAGACAGAGACTGTTGCTAAATATGAGATTATGGATGGAGCACCAGTCAAGGGCGAATCCATTCCTATCCGACTTTTCCTGGCTGGCTATGACCTTACACCCACAATGAGAGACGTAAACAAGAAGTTCTCTGTGAGGTACTTTCTGAACTTGGTGCTTGTGGATGAAGAAGATAGAAGATACTTCAAACAGCAGGTCTAGTGTTTTTGATGAAAATATCATGTTCCATTGCACTTACAGTGTCTTATTAGACACAAAGAAGTGATATAAATGaattctgtcttttttttgtgtgtgtaggaAATAGTTTTGTGGAGGAAGGCACCGGAGAAAATGCGGAAAAGGAATTTCCATCAGCGCTACGAGTCGCCTGAGCCCCGGCCGAGTCTCT
>TCONS_00012736
GTATGACCTCATTGTTCATCAGCTGGCTACTTACCCTGACGTCAACAACTCTATCAAAATGGAAGTGGGCATTGAAGACTGCCTGCACATAGAGTTTGAATACAACAAGTCCAAGTATCATCTCAAAGATGTTATTGTGGGTAAAATCTATTTCTTGCTGGTACGGATTAAAATCCAACACATGGAGCTGCAGCTGATCAAGAAAGAAATGACAGGAATAGGGCCGAGCACGACTACTGAGACAGAGACTGTTGCTAAATATGAGATTATGGATGGAGCACCAGTCAAGGGTGAGCAGCTGCTTCAAATCATTTTCTGTATCATTTTGTTTGgaaaattaatgtaattttgagtttattaaagACTTAAGACACAGGACCGCTTATGGAAGCACATTCTCTGGTTAGGTAATTACTTTGAACAAGTAACTGCTTTCTTAACTGATTTAAAAAGTATGCTTGATACAAAATGATTGTGTAGAGTGTATG

Function

symbol description
vps26a Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in early endosome and endosome membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26A (VPS26, retromer complex component A).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0015031 protein transport biological_process
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0030904 retromer complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1108 Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in early endosome and endosome membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26A (VPS26, retromer complex component A).

Ensembl:

ensembl_id ENSDARG00000056549

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012734 False 2375 mRNA 0.41 9 23058268 23067381
TCONS_00012735 False 514 lncRNA 0.42 3 23059517 23062293
TCONS_00013780 False 629 lncRNA 0.42 4 23059517 23062531
TCONS_00012736 True 488 lncRNA 0.38 3 23061224 23062531

Neighbor

gene id symbol gene type direction distance location
XLOC_006591 supv3l1 coding downstream 6502 23037585 ~ 23051766 (-)
XLOC_006590 hkdc1 coding downstream 26465 23017498 ~ 23031803 (-)
XLOC_006589 hk1 coding downstream 50455 22972888 ~ 23007813 (-)
XLOC_006588 tspan15 coding downstream 96658 22924024 ~ 22961610 (-)
XLOC_006587 rufy2 coding downstream 151008 22876467 ~ 22907260 (-)
XLOC_006593 srgn coding upstream 3200 23070581 ~ 23074454 (-)
XLOC_006594 kifbp coding upstream 16477 23083858 ~ 23095006 (-)
XLOC_006595 NA coding upstream 145378 23212759 ~ 23217818 (-)
XLOC_006596 si:dkey-103j14.5 coding upstream 166575 23233956 ~ 23270576 (-)
XLOC_006597 NA coding upstream 340648 23408029 ~ 23411631 (-)
XLOC_006471 BX537274.2 misc downstream 12793363 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 22232043 825904 ~ 826225 (-)
XLOC_006585 BX530068.1 non-coding downstream 210784 22843830 ~ 22847484 (-)
XLOC_006582 CR550304.1 non-coding downstream 273835 22778060 ~ 22784433 (-)
XLOC_006578 BX649385.1 non-coding downstream 863100 22191361 ~ 22195168 (-)
XLOC_006577 NA non-coding downstream 1118303 21925701 ~ 21939965 (-)
XLOC_006570 NA non-coding downstream 1910886 21146114 ~ 21147382 (-)
XLOC_006602 AL772289.1 non-coding upstream 893911 23961292 ~ 23961406 (-)
XLOC_006605 CR762497.2 non-coding upstream 1059682 24127063 ~ 24127179 (-)
XLOC_006607 CR762497.1 non-coding upstream 1216289 24283670 ~ 24286390 (-)

Expression


Co-expression Network