LOC122352692


Basic Information

Item Value
gene id LOC122352692
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2194085 ~ 2197429 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU109952
GGCGCTATCTTCACCTGGCCCTTATTTGTCCCGTGAGCTGAAAGTTCGCTCCTCCTTGACCACGCGTTACCTGACAGGAGTTGAGTTTCACCGAGTATTGTGGTGAAGGGAGTGTCTCTTTTCAGCTTGGGAACACCGCTTAATTCTTTCAGCCTCAATACGTTCATCTGTTCTAAAGCCATCTCTGTCAGTATCTTTTCCTCATTCGTACACAGAGCTCCAGCATGTCCGTTCCTGCCGGTGACGATGGCGGTGCATCTCGCCATCTGATTGCGTGCGTCGAAAAGATATGCAGATATGGAAGATGTGTGCTGATGGACGGGAAGCCCACCTGCGAGTGTCAGCTGGGCTACGTTGGAGAGTCCTGTAGCGAAACGGTAAATGACGCTCTGTCTGTACCTCTCACCCTCGGCGTCATTGCGTTCATCGTTGGCGTTATCATCATGTTCTTTGGCGTGGCTTTTATCCGGCAAAGGCTAAAGGCGAAGAAGAGACAAAAGGCAGCCGAGGAAGCCCTGTTGAGAAATGGAGCGCACCCTTAGCATGCTTTTAATGCAGCGTGCCATAAAATAGTACCGTCAACACTTTCCACCGTGACACTTAACTCACACTTCGCGTGATGTTAGGCTTCTTTATATATGTAGGACTGAACGCATTCGACGTTAACCGAAAGCTGTTGTTTATGAAATCCGTGAAGTCTGCAGCACGTCTGAATGATTGTAGAACATGGAGAGGAGATACGTGTAAATCACGTTAGACGAGCATGGACTGGTTCCTCAAACATGCCAGGTATTTCAGTGCTGCTTcttctgctgttatttttagctCGGTCCTGACTGGCGAGTTTCAATAACTGAAAGCCGAATAGTTTCACGGACTGATAAGACACAGACTGGTATCTTTTTCAAGCATTTATGGAAAACATGCGTGCCATTTTTTTTATGGGTTGGGttgagtttatttttgcttttgtagtTTCACGACAGCTTTGAATTCAACCTTTTTAGCTTTTTAGCCTTATTCAGCTGTTAACATGACTGTCTGTACAGTATTTT
>XR_006251908.1
GCGTCGCGCGAGGGCGGAGGACGCGAACGCTCGCGGAACCGTGTGATCGTTCTGAGGGTGTAACGACACCCGTATGTCAAATCCTACACTGATTTAAATGCCGCCAAACTGTTACTCCGGCGCTATCTTCACCTGGCCCTTATTTGTCCCGTGAGCTGAAAGTTCGCTCCTCCTTGACCACGCGTTACCTGACAGGAGTTGAGTTTCACCGAGTATTGTGGTGAAGGGAGTGTCTCTTTTCAGCTTGGGAACACCGCTTAATTCTTTCAGCCTCAATACGTTCATCTGTTCTAAAGCCATCTCTGTCAGTATCTTTTCCTCATTCGTACACAGAGCTCCAGCATGTCCGTTCCTGCCGGTGACGATGGCGGTGCATCTCGCCATCTGATTGCGTGCGTCGAAAAGATATGCAGATATGGAAGATGTGTGCTGATGGACGGGAAGCCCACCTGCGAGTGTCAGCTGGGCTACGTTGGAGAGTCCTGTAGCGAAACGGTAAATGACGCTCTGTCTGTACCTCTCACCCTCGGCGTCATTGCGTTCATCGTTGGCGTTATCATCATGTTCTTTGGCGTGGCTTTTATCCGGCAAAGGCTAAAGGCGAAGAAGAGACAAAAGGCAGCCGAGGAAGCCCTGTTGAGAAATGGAGCGCACCCTTAGCATGCTTTTAATGCAGCGTGCCATAAAATAGTACCGTCAACACTTTCCACCGTGACACTTAACTCACACTTCGCGTGATGTTAGGCTTCTTTATATATGTAGGACTGAACGCATTCGACGTTAACCGAAAGCTGTTGTTTATGAAATCCGTGAAGTCTGCAGCACGTCTGAATGATTGTAGAACATGGAGAGGAGATACGTGTAAATCACGTTAGACGAGCATGGACTGGTTCCTCAAACATGCCAGGTATTTCAGTGCTGCTTcttctgctgttatttttagctCGGTCCTGACTGGCGAGTTTCAATAACTGAAAGCCGAATAGTTTCACGGACTGATAAGACACAGACTGGTATCTTTTTCAAGCATTTATGGAAAACATGCGTGCCATTTTTTTTATGGGTTGGGttgagtttatttttgcttttgtagtTTCACGACAGCTTTGAATTCAACCTTTTTAGCTTTTTAGCCTTATTCAGCTGTTAACATGACTGTCTGTACAGTATTTTtcaataaagatattttttcatttgcttcTA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
ko04514 Cell adhesion molecules
ko04530 Tight junction
ko04670 Leukocyte transendothelial migration

RNA

RNA id representative length rna type GC content exon number start site end site
TU109952 False 1055 TUCP 0.46 4 2194115 2197311
XR_006251908.1 True 1203 lncRNA 0.47 4 2194085 2197429

Neighbor

gene id symbol gene type direction distance location
parm1 NA coding downstream 8042 2181795 ~ 2186043 (-)
sh3bp2 sh3bp2,LOC107667261,LOC107705055,LOC107558670,LOC107743173,LOC106568140 coding downstream 69353 2107110 ~ 2124732 (-)
vldlr vldlr,LOC107705052,LOC107548665,LOC107558669,LOC107667264 coding downstream 88796 2086121 ~ 2105289 (-)
kcnv2a kcnv2a,kcnv2,LOC107726563,LOC107667263,LOC107558705,LOC107743156,LOC108428855 coding downstream 109895 2081915 ~ 2084190 (-)
trappc13 trappc13,LOC107667267,LOC107742971,LOC107705057,LOC107726564 coding downstream 121170 2063385 ~ 2072915 (-)
si:dkey-88l16.3 LOC107667258,LOC107738845,LOC107743196,LOC107548646 coding upstream 1554 2198983 ~ 2228990 (-)
katnal2 katnal2,LOC102797751,LOC104955398,LOC107573073 coding upstream 154234 2351663 ~ 2360133 (-)
sigmar1 sigmar1,LOC107653128,LOC107573076 coding upstream 163339 2360768 ~ 2363564 (-)
tmem267 si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107756535,LOC107750222,LOC107554236,LOC107554852 coding upstream 584722 2782151 ~ 2787777 (-)
rassf6 LOC107750196,LOC107554850,LOC107554244,LOC107756540,LOC107653501 coding upstream 592124 2789553 ~ 2796224 (-)
G74306 LOC107738848,LOC107743003,LOC107558707,LOC107663452,LOC107548653 non-coding downstream 784 2191090 ~ 2193301 (-)
G74320 LOC107743020,LOC107663454,LOC107738849,LOC107548654,LOC107558708,LOC107667276 non-coding downstream 3927 2187668 ~ 2190158 (-)
G74319 NA non-coding downstream 14652 2179206 ~ 2179433 (-)
G74317 NA non-coding downstream 19722 2171007 ~ 2174363 (-)
LOC122352691 NA non-coding downstream 23536 2169319 ~ 2170549 (-)
G74324 NA non-coding upstream 50719 2248148 ~ 2250881 (-)
G74346 NA non-coding upstream 151906 2349335 ~ 2349691 (-)
G74345 NA non-coding upstream 153032 2350461 ~ 2350666 (-)
G74364 NA non-coding upstream 255729 2453158 ~ 2454862 (-)
G74367 NA non-coding upstream 262383 2459812 ~ 2460152 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 347183 1774223 ~ 1846902 (-)
nrarpa nrarpa,nrarp other downstream 706077 1483399 ~ 1488008 (-)
G74031 NA other downstream 720207 1466751 ~ 1473878 (-)
G74058 NA other downstream 745199 1445323 ~ 1448886 (-)
si:dkeyp-41f9.4 NA other downstream 1306073 885156 ~ 888012 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other upstream 519668 2717097 ~ 2767195 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other upstream 1139910 3337339 ~ 3377784 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 1404183 3601612 ~ 3607788 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 1708185 3905614 ~ 3912742 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 2821878 5019307 ~ 5028513 (-)

Expression


Co-expression Network